BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20240.1 Length=1608 Score E Sequences producing significant alignments: (Bits) Value Ahg946777 jgi|Araly1|946777|scaffold_703006.1 523 1e-147 Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881 484 6e-136 Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1 385 7e-106 > Ahg946777 jgi|Araly1|946777|scaffold_703006.1 Length=562 Score = 523 bits (283), Expect = 1e-147 Identities = 379/426 (89%), Gaps = 4/426 (1%) Strand=Plus/Plus Query 1066 GAGGGGCTACGGTTGCATCCCTCTGGTCCACTATTGTTCAGACTACCAAGTGAAGATGTC 1125 ||||| |||||||| ||||| ||||||||| ||||| ||||| | | | |||||||||| Sbjct 112 GAGGGACTACGGTTACATCCTTCTGGTCCATTATTGACCAGAC-ATCGACTGAAGATGTC 170 Query 1126 CAATTAAAGGGATATGACATTTCTGCAGGGACACATGTCATAATCAATGCTTGGGCACTC 1185 ||| ||||| |||||||||| ||||||||||||| || ||||||||||||||||||||| Sbjct 171 CAACTAAAGATATATGACATTGCTGCAGGGACACAGGTAATAATCAATGCTTGGGCACTC 230 Query 1186 CAACGAAACCCTGCGATATGGGGGCTTGATGCCA-ATGAATATAGACCGGAGAGACATTT 1244 |||||||||||| |||||||||| | ||||| || | ||||||||||| ||||| ||||| Sbjct 231 CAACGAAACCCTTCGATATGGGGACATGATG-CAGAAGAATATAGACCAGAGAGGCATTT 289 Query 1245 TGGTACGAATTTGGATTTCAA-CGTACTGATTCCAAATTCGTTCCATTTGGAGCAGGGAG 1303 |||| ||| |||||||| || ||||||||||||| |||||||||||||||||||| || Sbjct 290 TGGTTTGAACTTGGATTTTAATGGTACTGATTCCAAGTTCGTTCCATTTGGAGCAGGAAG 349 Query 1304 AAGACTTTGCCCTGGAATCGGATTTTCTTTGGTTTTGTCCAAATTGGCACTAGCCAACCT 1363 ||| |||||||| || |||||||||||| |||| |||||||||||| ||||||||||||| Sbjct 350 AAGCCTTTGCCCCGGGATCGGATTTTCTATGGTCTTGTCCAAATTGACACTAGCCAACCT 409 Query 1364 TGTGAAACGATTCAACTGGAGACTCAAGGTCGGACCAGTAGGAGATGATAAGCCTGATCT 1423 ||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct 410 TGTGAAACGGTTCAACTGGAGACTCGAGGTCGGACCAGGGGGAGATGATAAACCTGATCT 469 Query 1424 AGCTGAAGCATCTGGTATTGATGTTTGTCGTAAGTTTCCTCTCATTGTCTTTCCATCAAT 1483 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | Sbjct 470 AGCTGAAGCATCTGGTATTGATGTTTGCCGCAAGTTTCCTCTCATTGTCTTTCCATCACT 529 Query 1484 TGCGCA 1489 || ||| Sbjct 530 TGTGCA 535 > Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881 Length=1512 Score = 484 bits (262), Expect = 6e-136 Identities = 1134/1540 (74%), Gaps = 119/1540 (8%) Strand=Plus/Plus Query 1 ATGGAGATGATATT-A--ATCTCTTTGTGCTTAACCACCTTATTAGCATTTCTCTTCCTA 57 ||||| |||||||| | |||||||||||||||| ||| | ||| | ||||||| || Sbjct 19 ATGGAAATGATATTGATGGTCTCTTTGTGCTTAACGACCCTCTTAACCCTTCTCTTGCTT 78 Query 58 AAACCACTCCTCAAACGAATCACCACCACCAAACCT-AAGTTACCACCGTCTCCATGGCG 116 |||| | |||||||||| | ||| ||| |||| | || |||||||| ||||||||||| Sbjct 79 AAACAATTCCTCAAACG-A--ACCGCCAACAAA-GTGAACTTACCACCATCTCCATGGCG 134 Query 117 GCTTCCGGTGATTGGAAACCTCCACCAGCTCGGTC-CCAACCCTCACCGCTATCTCCATT 175 |||||||||||||||||||||||||||||| | | ||| ||||||||| | ||||||| Sbjct 135 ACTTCCGGTGATTGGAAACCTCCACCAGCTCAGCCTCCA-CCCTCACCGTTCCCTCCATT 193 Query 176 CCCTCAGCCTCCGGTATGGGCCACTCATGCTCCTTCATTTCGGCCGTGTACCTGTGCTTG 235 |||||||||||||||| || ||||||||||| |||||||| |||||||| || | || | Sbjct 194 CCCTCAGCCTCCGGTACGGACCACTCATGCTGCTTCATTTTGGCCGTGTCCCCATACTCG 253 Query 236 TGGTTTCTTGTCCTGACGT-G-A-CTAATGACATCAT-GAAAACACACGACCTTAAGTTC 291 | || || | || | || | | || |||| | || |||||||||||| |||||||| Sbjct 254 TAGTATCCT--CCGG-CGAAGCAGCTCATGAGGT-ATTGAAAACACACGATCTTAAGTTT 309 Query 292 GCAAACCGCCCGAAATCAAAAGCTATTAATATATTTATGGAA-GGTGGCCGTGATATAAT 350 || |||||||||| ||||||||| || | ||||| || ||||| |||||| | | Sbjct 310 GCCAACCGCCCGAGATCAAAAGCCGTTCGTGGGCTTATG-AATGGTGGGCGTGATGTGGT 368 Query 351 CTTTGGCCCCTACGGAGAAGATTGGA-AGAGTATGAAGAGTCTGGGTGTGGTACA-TCTG 408 ||||| ||||| ||||| |||||| | || ||||||||| | | | | || |||| Sbjct 369 GTTTGGTCCCTATGGAGATTATTGGAGACAG-ATGAAGAGTGTATGCATTCT-CAATCTG 426 Query 409 CTCAATAACAAAATGGTTAG-GTCCTTTGAGAACCTAAGAGAAGAAGAGATCAAA-GTAA 466 |||| |||||||||||| | |||||||||||| |||||||||||||| | ||| | || Sbjct 427 CTCACCAACAAAATGGTT-GCGTCCTTTGAGAAGATAAGAGAAGAAGAGGT-AAATGCAA 484 Query 467 TGACAGAGAAGCTGGAAGAA-GCATCTTCATCTTCTTCATCAGTAAATCTAAGCAAACTC 525 ||| ||||||||||| ||| ||| || ||||||||||||| ||| || ||| ||||| Sbjct 485 TGATTGAGAAGCTGGA-GAAAGCAAGTTGTTCTTCTTCATCAGAAAACCTGAGCGAACTC 543 Query 526 CTTATGACTCTTACCAA-CGATATCAT-ATGCAGAATCACCTTGGGAAGAAAATATAACG 583 || | ||||| ||||| |||| | | | | ||| | |||||||||||||| ||| || Sbjct 544 TTTGTTACTCT-ACCAAGCGATGTTACGA-GTAGAGTTGCCTTGGGAAGAAAACATAGCG 601 Query 584 AAGAGGAAGGTGGAATCGATATCAAGAA-CTTAGTGATG-ACATCCTCTGAGTTTTTTGG 641 | || ||| | || ||| | ||||| | ||||| | | ||| | ||| |||| || Sbjct 602 AGGACGAAACCGCAAGGGATCTTAAGAAGCG-AGTGAGGCAGATCATG-GAGCTTTTAGG 659 Query 642 CAAATTCTTTTTTGGAGATTTTATTCCTAGTTT-GGCATGGATAGACTGGATCAGTGGCA 700 | | ||| | || || | | |||| |||| ||||||||||||| |||||| || Sbjct 660 CGAGTTCCCAATCGGGGACTATGTTCCG-GTTTTGGCATGGATAGACAGGATCAACGGTT 718 Query 701 T-AGATGATAAAATGAAGGACA-TAAATAACAAG--TT-AGATTGTTTTT-TAGACAGCA 754 | | ||| || ||| ||||| | ||| | |||| || || | | || | |||| | Sbjct 719 TCA-ATGCTAGAATTAAGGA-AGTAAGT--CAAGGGTTTAGC--GATCTTATGGACAA-A 771 Query 755 -TGGTGCAAGAACATGTTGATGCCG--A-TCACAAAGAGCCATCAGATTTTATTGATATG 810 |||||||||||||| | || || | | ||| |||||| ||||| | ||||| Sbjct 772 GTGGTGCAAGAACATCTAGAGGCAGGTAATCATAAAGAG------GATTTCGTCGATATA 825 Query 811 TTGCTACTGATTC-AAAAGGATAAAACCAAACGGTTT--AAGTTTGACAGAAGTGACTT- 866 || || | | || |||| || || | | || || ||| | | |||| ||| | Sbjct 826 CTGTTA-TCAATCGAAAACGAGAAGAGTATT-GGATTCGAAGCTCAA-AGAAACGACATC 882 Query 867 AATACTCAT-ACTCAA-GGATATGTTTTTCTCTGGAACAG-CAACAACTGCCTCACAATT 923 || | |||| | | | |||||||||| | || || | |||||| | | | | | | Sbjct 883 AA-ATTCATGA-T-ATTGGATATGTTTATAGGAGGGAC-GTCAACAAGTTCAACTCTACT 938 Query 924 AGAATGGACAATGACAGAGCTTATGAGACATCCAGAGTGT-ATGAAAAAACTTCAAGATG 982 |||||||| |||||| ||||| || ||| ||||| | ||| ||||| ||||| ||||| | Sbjct 939 AGAATGGATAATGACGGAGCTGATCAGAAATCCAAA-TGTTATGAAGAAACTCCAAGACG 997 Query 983 AGATTAATTCATT--TTCGAC-ACATAATTTGA-ATGTAACGGAGAAAGAAGTTGAGAAA 1038 ||||| ||| || | | |||| || | | ||| || ||||||||| | || Sbjct 998 AGATTCGGTCAACCATTAGGCCACATGGTTC-ATACATAAAAGAAAAAGAAGTTAATAAT 1056 Query 1039 ATGAACTATTT-ACATTGC-GTGATTAAGGAGGGGCTACGGTTGCATCC-C-TCTGGTCC 1094 ||||| || || | | || |||||||| |||| | | ||||||||||| | ||| ||| Sbjct 1057 ATGAAATACTTGAAA--GCCGTGATTAAAGAGGTGTTTCGGTTGCATCCTCCTCT--TCC 1112 Query 1095 ACTATTG-TTC--AGACTACCAAGTGAAGATGTCCAATTAAAGGGATATGACATTTCTGC 1151 |||| | ||| |||||| ||||||||||||| || ||||||||||| |||| | || Sbjct 1113 ACTAATACTTCCTAGACTATTAAGTGAAGATGTCAAAGTAAAGGGATATAACATAGCGGC 1172 Query 1152 AGGGACACATGTCATAATCAATGCTTGGGCACTCCAACGAAACCCTGCGATATGGGGGCT 1211 ||||||| | || |||||||||||||||||| ||||| || |||| ||||||||||| | Sbjct 1173 AGGGACAGAGGTTATAATCAATGCTTGGGCAATCCAAAGAGACCCCGCGATATGGGGACC 1232 Query 1212 TGATGCC-AATGAATAT-AGACCGGAGAGACATTTTGGTACGAA-TTTGGATT-TCAACG 1267 |||||| || |||| | | ||| |||||||| || | | | || |||||||| ||| | Sbjct 1233 GGATGCCGAA-GAAT-TCAAACCAGAGAGACACTTAGATTC-AACTTTGGATTATCATGG 1289 Query 1268 TACTGATTCCAAATTCGTTCCATTTGGAGCAGGGAGAAG-ACTTTGCCCTGGAATCGGAT 1326 | |||| || ||| | ||||| ||| |||| ||||| | |||| ||||| || || Sbjct 1290 AAAGGATTTGAACTTCATCCCATTCGGATCAGGTAGAAGGA-TTTGTCCTGGGATAA-AT 1347 Query 1327 TTT-CTTTGGTTTTG-TCCAAATTGGCACTAGCCAACCTTGTGAAAC-GATTCAACTGGA 1383 | |||||| |||| | | || || | ||||||||||| | | |||| |||||| Sbjct 1348 CTGGCTTTGGGTTTGGTAGAGGTTA-CAGTGGCCAACCTTGT-AGGCCGATTTGACTGGA 1405 Query 1384 GACTCAAGG-TCGGACCAGTAGGAGATGAT-AAGCCTGATCTAGCTGAAGCATCTGGTAT 1441 | || ||| | |||||| | | | ||| || |||||||| |||||||| ||||| | Sbjct 1406 GGGTCGAGGCT-GGACCAA-ATGCG--GATCAA-CCTGATCTGGCTGAAGCCGCTGGTCT 1460 Query 1442 TGATGTTTGTCGTAAGTTTCCTCTCATTGTC-TTTCCATC 1480 |||||||| || ||||| |||||||||| | |||||||| Sbjct 1461 CGATGTTTGCCGCAAGTTCCCTCTCATTG-CATTTCCATC 1499 > Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1 Length=1545 Score = 385 bits (208), Expect = 7e-106 Identities = 1127/1551 (73%), Gaps = 141/1551 (9%) Strand=Plus/Plus Query 1 ATGGAGATGATA-T--TAATCTCTTTGTGCTTAACCACCTTATTAGCATTTCTCTT-CCT 56 ||||| |||||| | | |||||||||||||| || ||| | ||| | |||| || | | Sbjct 24 ATGGAAATGATACTGATGATCTCTTTGTGCTTGACGACCCTCTTAACCCTTCTATTGCTT 83 Query 57 A-AAACCACTCCTCAAACGAATCACCACCACCAAACCT-AAGTTACCACCGTCTCCATGG 114 | ||| | |||||||||| | || |||| ||| | || |||||| ||||||||| Sbjct 84 AGAAA--ATTCCTCAAACG-A--ACTGCCACTAAA-GTGAACCGACCACCATCTCCATGG 137 Query 115 CGGCTTCCGGTGATTGGAAACCTCCACCAGCTCGGTC-CCAACCCTCACCGCTATCTCCA 173 || |||||||||||||||||||||||||||||| | | ||| ||||||||| | |||| Sbjct 138 CGACTTCCGGTGATTGGAAACCTCCACCAGCTCAGCCTCCA-CCCTCACCGTTCCCTCCG 196 Query 174 TTCCCTCAGCCTCCGGTATGGGCCACTCATGCTCCTTCATTTCGGCCGTGTACCTGTGCT 233 |||||||||||| |||| || || ||||||||||||||||| |||||||| || | || Sbjct 197 GTCCCTCAGCCTCAGGTACGGACCTCTCATGCTCCTTCATTTTGGCCGTGTCCCCATACT 256 Query 234 TGTGGTTTCTTGTCC--TGACGT-GACT-AATGACATCAT-GAAAACACACGACCTTAAG 288 || || || | || ||| | | || || || | || ||||||||| || | |||| Sbjct 257 CGTAGTCTCCT--CCGGTGAAGCAG-CTCAA-GAGGT-ATTGAAAACACATGATCATAAG 311 Query 289 TTCGCAAACCGCCCGAAATCAAAAGCTATTAATATATTTATGGAA-GGTGGCCGTGATAT 347 || || |||||||||| ||||||||| || | ||||| || ||||| |||||| | Sbjct 312 TTTGCGAACCGCCCGAGATCAAAAGCCGTTCGTGGGCTTATG-AATGGTGGGCGTGATGT 370 Query 348 AATCTTTGGC-CCCTACGGAGAAGATTGGA-AGAGTATGAAGAGTCTGGGTGTGGTACA- 404 | |||| | ||||| |||||| |||||| | || ||||||||| | | | | || Sbjct 371 GGTGTTTG-CTCCCTATGGAGAATATTGGAGACAG-ATGAAGAGTGTATGCATTCT-CAA 427 Query 405 TCTGCTCAATAACAAAATGGTT-AGGTCCTTTGAGAACCTAAGAGAAGAAGAGATCAAA- 462 |||||||| |||||||||||| | ||||||||||| |||||||||||||| | || Sbjct 428 TCTGCTCACCAACAAAATGGTTGAA-TCCTTTGAGAAGGTAAGAGAAGAAGAGGT-AACT 485 Query 463 GTAATGACAGAGAAGCTGGAAGAA-GCATCTTCATCTTCTTCATCAGTAAATCTAAGC-A 520 | ||||| ||||||||||| ||| ||| || ||||||||||||| |||||| || | Sbjct 486 GCAATGATGGAGAAGCTGGA-GAAAGCAAGTTGTTCTTCTTCATCAGAAAATCTGAGTGA 544 Query 521 AACTCCTTATGACTCTTACCAA-CGATATCAT-ATGCAGAATCACCTTGGGAAGAAAATA 578 || || |||| ||||| ||||| |||| | | | | || | |||||||||||||| | Sbjct 545 AA-TCTTTATTACTCT-ACCAAGCGATGTTACGA-GTAGGGTTGCCTTGGGAAGAAAACA 601 Query 579 TAACGAAGAGGAAGGTGGAATCGATATCAAGAA-CTTAGTGATG-ACATCCTCTGAGTTT 636 || ||| || ||| | || ||| | ||||| | ||||| | | ||| | ||| || Sbjct 602 TAGCGAGGACGAAACCGCAAGGGATCTTAAGAAGCG-AGTGAGGCAGATCATG-GAGCTT 659 Query 637 TTTGGCAAATTCTTTTTTGGAGATTTTATTCCTAGTTTGGCATGGATAGACTGG-ATCAG 695 || ||| | ||| | || || | | | || | ||||| ||||||||| ||| ||| | Sbjct 660 TTAGGCGAGTTCCCGATCGGGGAATATGTCCCCATTTTGGGATGGATAGA-TGGGATCCG 718 Query 696 TGGCAT-AGATGATAAAATGAAGGACA-TAAATAACAAGTT-AGATTGTTTTT-TAGACA 751 ||| | | || |||| || ||||| | | | | | ||| || | | || | |||| Sbjct 719 TGGTTTCA-ATAATAAGATTAAGGA-AGTGAGTCGCGGGTTTAGC--GATCTTATGGACA 774 Query 752 GCA-TGGTGCAAGAACATGTT-GATGCCGATCACAA-AGAGCCATCAGATTTTATTGATA 808 | |||||||||||||| || || || || || || | | | | ||||| | |||| Sbjct 775 A-AGTGGTGCAAGAACAT-TTAGAGGCGGA-CA-AACATAA--AGCGGATTTCGTGGATA 828 Query 809 TGTTGCTACTGATTC-AAAAGGATAA-AACCAAACGGTTT--AAGTTTGACAGA-AGTGA 863 | ||| || | | || |||| || || || || || || ||||| | ||| | || Sbjct 829 TATTGTTA-TCAATCGAAAAAGACAAGAAT-AAT-GGATTCCAAGTTCAA-AGAGAC-GA 883 Query 864 CTT-AATACTCAT-ACTCAAGGATATGTTTTTCTCTGGAACAG-CAACAACTGCCTCACA 920 | | || | | || | || |||||||||| | ||||| | |||||||| | | | Sbjct 884 CATCAA-ATTTATGA-TCTTGGATATGTTTATAGGAGGAAC-GTCAACAACTTCGACTCT 940 Query 921 ATTAGAATGGACAATGACAGAGCTTATGAGACA-TCCAGAGTGTATGAAAAAACTTCAAG 979 | |||||||||||||||| || || || ||| | |||| || ||||||| || || |||| Sbjct 941 ACTAGAATGGACAATGACGGAACTGATCAGA-AGTCCAAAGAGTATGAAGAATCTCCAAG 999 Query 980 ATGAGATTAATTCATT--TTCGAC-ACATAATTTGA-ATGTAACGGAGAAAGAAGTTGAG 1035 | |||||| ||| || | | |||| || | | ||| || ||||||||||| Sbjct 1000 ACGAGATTCGGTCAACCATTAGGCCACATGGTTC-ATACATAAAAGAAAAAGAAGTTGA- 1057 Query 1036 AAA-ATGAACTATTT-ACATTGC-GTGATTAAGGAGGGGCTACGGTTGCATCCCTCTGGT 1092 ||| ||||| || || | | || |||||||| |||| ||| ||||||||||| ||| | Sbjct 1058 AAATATGAAATACTTGAAA--GCCGTGATTAAAGAGGTGCTTCGGTTGCATCCTTCTCTT 1115 Query 1093 CCACT-ATTGTTC--AGACTACC-AAGTGAAGATGTCCAATTAAAGGGATATGACATTTC 1148 ||| | || ||| ||||| | ||||||||||||| || ||||||||||| |||| | Sbjct 1116 CCAATGATACTTCCCAGACT-CTTAAGTGAAGATGTCAAAGTAAAGGGATATAACATAGC 1174 Query 1149 TGCAGGGACACATGTCATAATCAATGCTTGGGC-ACTCCAACGAAAC-CCTGCGATATGG 1206 ||||||||| | || || |||||||||||||| | |||||||| || || ||||||||| Sbjct 1175 CGCAGGGACAGAGGTGATCATCAATGCTTGGGCGA-TCCAACGAGACACC-GCGATATGG 1232 Query 1207 GGGCTTGATGCC-AATGAATAT-AGACCGGAGAGACATTTTGGTAC-GAATTTGGATT-T 1262 || | ||||| || |||| | | |||||| ||||| || | | | | |||||||| | Sbjct 1233 GGACCGGATGCTGAA-GAAT-TCAAACCGGAAAGACACTTAGATTCAGC-TTTGGATTAT 1289 Query 1263 CAACGT-ACTGATTCCAAATT-CGTTCCATTTGGAGCAGGGAGAAG-ACTTTG-CCCTGG 1318 || || | || | || | | ||||||| || |||||||||| | |||| ||| || Sbjct 1290 CA-CGGGAAAAAT-CTGAACTACATTCCATTCGGTTCAGGGAGAAGGA-TTTGTCCCGGG 1346 Query 1319 AATCGGATTTT-CTTTGGTTTTGTCCAAAT-TGGCACTAGCCAACCTTGTGAAAC-GATT 1375 | | || || |||||| |||| | | | || || | ||||||||||| | | |||| Sbjct 1347 A-TAA-ATCTTGCTTTGGGTTTGGC-AGAGGTGACAGTGGCCAACCTTGT-AGGCCGATT 1402 Query 1376 CAACTGGA-GACTCA-AGG-TCGGACCAG-TAGGAGATGATAAGCCTGATCTAGCTGAAG 1431 |||||| | | | ||| | |||||| | || ||| | | |||||||||||||||| Sbjct 1403 TGACTGGAAGG-T-AGAGGCT-GGACCAAATGGG-GATCA-A--CCTGATCTAGCTGAAG 1455 Query 1432 C-ATCTGGTATTGATGTTTGTCGTAAGTTTCCTCTCATTGTC-TTTCCATC 1480 | || |||||| |||||||| || |||| ||||||||||| | |||||||| Sbjct 1456 CCAT-TGGTATCGATGTTTGCCGCAAGTCTCCTCTCATTG-CATTTCCATC 1504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60258767590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5