BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20240.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946777 jgi|Araly1|946777|scaffold_703006.1 523 1e-147
Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881 484 6e-136
Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1 385 7e-106
> Ahg946777 jgi|Araly1|946777|scaffold_703006.1
Length=562
Score = 523 bits (283), Expect = 1e-147
Identities = 379/426 (89%), Gaps = 4/426 (1%)
Strand=Plus/Plus
Query 1066 GAGGGGCTACGGTTGCATCCCTCTGGTCCACTATTGTTCAGACTACCAAGTGAAGATGTC 1125
||||| |||||||| ||||| ||||||||| ||||| ||||| | | | ||||||||||
Sbjct 112 GAGGGACTACGGTTACATCCTTCTGGTCCATTATTGACCAGAC-ATCGACTGAAGATGTC 170
Query 1126 CAATTAAAGGGATATGACATTTCTGCAGGGACACATGTCATAATCAATGCTTGGGCACTC 1185
||| ||||| |||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 171 CAACTAAAGATATATGACATTGCTGCAGGGACACAGGTAATAATCAATGCTTGGGCACTC 230
Query 1186 CAACGAAACCCTGCGATATGGGGGCTTGATGCCA-ATGAATATAGACCGGAGAGACATTT 1244
|||||||||||| |||||||||| | ||||| || | ||||||||||| ||||| |||||
Sbjct 231 CAACGAAACCCTTCGATATGGGGACATGATG-CAGAAGAATATAGACCAGAGAGGCATTT 289
Query 1245 TGGTACGAATTTGGATTTCAA-CGTACTGATTCCAAATTCGTTCCATTTGGAGCAGGGAG 1303
|||| ||| |||||||| || ||||||||||||| |||||||||||||||||||| ||
Sbjct 290 TGGTTTGAACTTGGATTTTAATGGTACTGATTCCAAGTTCGTTCCATTTGGAGCAGGAAG 349
Query 1304 AAGACTTTGCCCTGGAATCGGATTTTCTTTGGTTTTGTCCAAATTGGCACTAGCCAACCT 1363
||| |||||||| || |||||||||||| |||| |||||||||||| |||||||||||||
Sbjct 350 AAGCCTTTGCCCCGGGATCGGATTTTCTATGGTCTTGTCCAAATTGACACTAGCCAACCT 409
Query 1364 TGTGAAACGATTCAACTGGAGACTCAAGGTCGGACCAGTAGGAGATGATAAGCCTGATCT 1423
||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 410 TGTGAAACGGTTCAACTGGAGACTCGAGGTCGGACCAGGGGGAGATGATAAACCTGATCT 469
Query 1424 AGCTGAAGCATCTGGTATTGATGTTTGTCGTAAGTTTCCTCTCATTGTCTTTCCATCAAT 1483
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
Sbjct 470 AGCTGAAGCATCTGGTATTGATGTTTGCCGCAAGTTTCCTCTCATTGTCTTTCCATCACT 529
Query 1484 TGCGCA 1489
|| |||
Sbjct 530 TGTGCA 535
> Ahg320824 jgi|Araly1|320824|fgenesh1_pm.C_scaffold_4000881
Length=1512
Score = 484 bits (262), Expect = 6e-136
Identities = 1134/1540 (74%), Gaps = 119/1540 (8%)
Strand=Plus/Plus
Query 1 ATGGAGATGATATT-A--ATCTCTTTGTGCTTAACCACCTTATTAGCATTTCTCTTCCTA 57
||||| |||||||| | |||||||||||||||| ||| | ||| | ||||||| ||
Sbjct 19 ATGGAAATGATATTGATGGTCTCTTTGTGCTTAACGACCCTCTTAACCCTTCTCTTGCTT 78
Query 58 AAACCACTCCTCAAACGAATCACCACCACCAAACCT-AAGTTACCACCGTCTCCATGGCG 116
|||| | |||||||||| | ||| ||| |||| | || |||||||| |||||||||||
Sbjct 79 AAACAATTCCTCAAACG-A--ACCGCCAACAAA-GTGAACTTACCACCATCTCCATGGCG 134
Query 117 GCTTCCGGTGATTGGAAACCTCCACCAGCTCGGTC-CCAACCCTCACCGCTATCTCCATT 175
|||||||||||||||||||||||||||||| | | ||| ||||||||| | |||||||
Sbjct 135 ACTTCCGGTGATTGGAAACCTCCACCAGCTCAGCCTCCA-CCCTCACCGTTCCCTCCATT 193
Query 176 CCCTCAGCCTCCGGTATGGGCCACTCATGCTCCTTCATTTCGGCCGTGTACCTGTGCTTG 235
|||||||||||||||| || ||||||||||| |||||||| |||||||| || | || |
Sbjct 194 CCCTCAGCCTCCGGTACGGACCACTCATGCTGCTTCATTTTGGCCGTGTCCCCATACTCG 253
Query 236 TGGTTTCTTGTCCTGACGT-G-A-CTAATGACATCAT-GAAAACACACGACCTTAAGTTC 291
| || || | || | || | | || |||| | || |||||||||||| ||||||||
Sbjct 254 TAGTATCCT--CCGG-CGAAGCAGCTCATGAGGT-ATTGAAAACACACGATCTTAAGTTT 309
Query 292 GCAAACCGCCCGAAATCAAAAGCTATTAATATATTTATGGAA-GGTGGCCGTGATATAAT 350
|| |||||||||| ||||||||| || | ||||| || ||||| |||||| | |
Sbjct 310 GCCAACCGCCCGAGATCAAAAGCCGTTCGTGGGCTTATG-AATGGTGGGCGTGATGTGGT 368
Query 351 CTTTGGCCCCTACGGAGAAGATTGGA-AGAGTATGAAGAGTCTGGGTGTGGTACA-TCTG 408
||||| ||||| ||||| |||||| | || ||||||||| | | | | || ||||
Sbjct 369 GTTTGGTCCCTATGGAGATTATTGGAGACAG-ATGAAGAGTGTATGCATTCT-CAATCTG 426
Query 409 CTCAATAACAAAATGGTTAG-GTCCTTTGAGAACCTAAGAGAAGAAGAGATCAAA-GTAA 466
|||| |||||||||||| | |||||||||||| |||||||||||||| | ||| | ||
Sbjct 427 CTCACCAACAAAATGGTT-GCGTCCTTTGAGAAGATAAGAGAAGAAGAGGT-AAATGCAA 484
Query 467 TGACAGAGAAGCTGGAAGAA-GCATCTTCATCTTCTTCATCAGTAAATCTAAGCAAACTC 525
||| ||||||||||| ||| ||| || ||||||||||||| ||| || ||| |||||
Sbjct 485 TGATTGAGAAGCTGGA-GAAAGCAAGTTGTTCTTCTTCATCAGAAAACCTGAGCGAACTC 543
Query 526 CTTATGACTCTTACCAA-CGATATCAT-ATGCAGAATCACCTTGGGAAGAAAATATAACG 583
|| | ||||| ||||| |||| | | | | ||| | |||||||||||||| ||| ||
Sbjct 544 TTTGTTACTCT-ACCAAGCGATGTTACGA-GTAGAGTTGCCTTGGGAAGAAAACATAGCG 601
Query 584 AAGAGGAAGGTGGAATCGATATCAAGAA-CTTAGTGATG-ACATCCTCTGAGTTTTTTGG 641
| || ||| | || ||| | ||||| | ||||| | | ||| | ||| |||| ||
Sbjct 602 AGGACGAAACCGCAAGGGATCTTAAGAAGCG-AGTGAGGCAGATCATG-GAGCTTTTAGG 659
Query 642 CAAATTCTTTTTTGGAGATTTTATTCCTAGTTT-GGCATGGATAGACTGGATCAGTGGCA 700
| | ||| | || || | | |||| |||| ||||||||||||| |||||| ||
Sbjct 660 CGAGTTCCCAATCGGGGACTATGTTCCG-GTTTTGGCATGGATAGACAGGATCAACGGTT 718
Query 701 T-AGATGATAAAATGAAGGACA-TAAATAACAAG--TT-AGATTGTTTTT-TAGACAGCA 754
| | ||| || ||| ||||| | ||| | |||| || || | | || | |||| |
Sbjct 719 TCA-ATGCTAGAATTAAGGA-AGTAAGT--CAAGGGTTTAGC--GATCTTATGGACAA-A 771
Query 755 -TGGTGCAAGAACATGTTGATGCCG--A-TCACAAAGAGCCATCAGATTTTATTGATATG 810
|||||||||||||| | || || | | ||| |||||| ||||| | |||||
Sbjct 772 GTGGTGCAAGAACATCTAGAGGCAGGTAATCATAAAGAG------GATTTCGTCGATATA 825
Query 811 TTGCTACTGATTC-AAAAGGATAAAACCAAACGGTTT--AAGTTTGACAGAAGTGACTT- 866
|| || | | || |||| || || | | || || ||| | | |||| ||| |
Sbjct 826 CTGTTA-TCAATCGAAAACGAGAAGAGTATT-GGATTCGAAGCTCAA-AGAAACGACATC 882
Query 867 AATACTCAT-ACTCAA-GGATATGTTTTTCTCTGGAACAG-CAACAACTGCCTCACAATT 923
|| | |||| | | | |||||||||| | || || | |||||| | | | | | |
Sbjct 883 AA-ATTCATGA-T-ATTGGATATGTTTATAGGAGGGAC-GTCAACAAGTTCAACTCTACT 938
Query 924 AGAATGGACAATGACAGAGCTTATGAGACATCCAGAGTGT-ATGAAAAAACTTCAAGATG 982
|||||||| |||||| ||||| || ||| ||||| | ||| ||||| ||||| ||||| |
Sbjct 939 AGAATGGATAATGACGGAGCTGATCAGAAATCCAAA-TGTTATGAAGAAACTCCAAGACG 997
Query 983 AGATTAATTCATT--TTCGAC-ACATAATTTGA-ATGTAACGGAGAAAGAAGTTGAGAAA 1038
||||| ||| || | | |||| || | | ||| || ||||||||| | ||
Sbjct 998 AGATTCGGTCAACCATTAGGCCACATGGTTC-ATACATAAAAGAAAAAGAAGTTAATAAT 1056
Query 1039 ATGAACTATTT-ACATTGC-GTGATTAAGGAGGGGCTACGGTTGCATCC-C-TCTGGTCC 1094
||||| || || | | || |||||||| |||| | | ||||||||||| | ||| |||
Sbjct 1057 ATGAAATACTTGAAA--GCCGTGATTAAAGAGGTGTTTCGGTTGCATCCTCCTCT--TCC 1112
Query 1095 ACTATTG-TTC--AGACTACCAAGTGAAGATGTCCAATTAAAGGGATATGACATTTCTGC 1151
|||| | ||| |||||| ||||||||||||| || ||||||||||| |||| | ||
Sbjct 1113 ACTAATACTTCCTAGACTATTAAGTGAAGATGTCAAAGTAAAGGGATATAACATAGCGGC 1172
Query 1152 AGGGACACATGTCATAATCAATGCTTGGGCACTCCAACGAAACCCTGCGATATGGGGGCT 1211
||||||| | || |||||||||||||||||| ||||| || |||| ||||||||||| |
Sbjct 1173 AGGGACAGAGGTTATAATCAATGCTTGGGCAATCCAAAGAGACCCCGCGATATGGGGACC 1232
Query 1212 TGATGCC-AATGAATAT-AGACCGGAGAGACATTTTGGTACGAA-TTTGGATT-TCAACG 1267
|||||| || |||| | | ||| |||||||| || | | | || |||||||| ||| |
Sbjct 1233 GGATGCCGAA-GAAT-TCAAACCAGAGAGACACTTAGATTC-AACTTTGGATTATCATGG 1289
Query 1268 TACTGATTCCAAATTCGTTCCATTTGGAGCAGGGAGAAG-ACTTTGCCCTGGAATCGGAT 1326
| |||| || ||| | ||||| ||| |||| ||||| | |||| ||||| || ||
Sbjct 1290 AAAGGATTTGAACTTCATCCCATTCGGATCAGGTAGAAGGA-TTTGTCCTGGGATAA-AT 1347
Query 1327 TTT-CTTTGGTTTTG-TCCAAATTGGCACTAGCCAACCTTGTGAAAC-GATTCAACTGGA 1383
| |||||| |||| | | || || | ||||||||||| | | |||| ||||||
Sbjct 1348 CTGGCTTTGGGTTTGGTAGAGGTTA-CAGTGGCCAACCTTGT-AGGCCGATTTGACTGGA 1405
Query 1384 GACTCAAGG-TCGGACCAGTAGGAGATGAT-AAGCCTGATCTAGCTGAAGCATCTGGTAT 1441
| || ||| | |||||| | | | ||| || |||||||| |||||||| ||||| |
Sbjct 1406 GGGTCGAGGCT-GGACCAA-ATGCG--GATCAA-CCTGATCTGGCTGAAGCCGCTGGTCT 1460
Query 1442 TGATGTTTGTCGTAAGTTTCCTCTCATTGTC-TTTCCATC 1480
|||||||| || ||||| |||||||||| | ||||||||
Sbjct 1461 CGATGTTTGCCGCAAGTTCCCTCTCATTG-CATTTCCATC 1499
> Ahg481994 jgi|Araly1|481994|fgenesh2_kg.4__1054__AT2G30770.1
Length=1545
Score = 385 bits (208), Expect = 7e-106
Identities = 1127/1551 (73%), Gaps = 141/1551 (9%)
Strand=Plus/Plus
Query 1 ATGGAGATGATA-T--TAATCTCTTTGTGCTTAACCACCTTATTAGCATTTCTCTT-CCT 56
||||| |||||| | | |||||||||||||| || ||| | ||| | |||| || | |
Sbjct 24 ATGGAAATGATACTGATGATCTCTTTGTGCTTGACGACCCTCTTAACCCTTCTATTGCTT 83
Query 57 A-AAACCACTCCTCAAACGAATCACCACCACCAAACCT-AAGTTACCACCGTCTCCATGG 114
| ||| | |||||||||| | || |||| ||| | || |||||| |||||||||
Sbjct 84 AGAAA--ATTCCTCAAACG-A--ACTGCCACTAAA-GTGAACCGACCACCATCTCCATGG 137
Query 115 CGGCTTCCGGTGATTGGAAACCTCCACCAGCTCGGTC-CCAACCCTCACCGCTATCTCCA 173
|| |||||||||||||||||||||||||||||| | | ||| ||||||||| | ||||
Sbjct 138 CGACTTCCGGTGATTGGAAACCTCCACCAGCTCAGCCTCCA-CCCTCACCGTTCCCTCCG 196
Query 174 TTCCCTCAGCCTCCGGTATGGGCCACTCATGCTCCTTCATTTCGGCCGTGTACCTGTGCT 233
|||||||||||| |||| || || ||||||||||||||||| |||||||| || | ||
Sbjct 197 GTCCCTCAGCCTCAGGTACGGACCTCTCATGCTCCTTCATTTTGGCCGTGTCCCCATACT 256
Query 234 TGTGGTTTCTTGTCC--TGACGT-GACT-AATGACATCAT-GAAAACACACGACCTTAAG 288
|| || || | || ||| | | || || || | || ||||||||| || | ||||
Sbjct 257 CGTAGTCTCCT--CCGGTGAAGCAG-CTCAA-GAGGT-ATTGAAAACACATGATCATAAG 311
Query 289 TTCGCAAACCGCCCGAAATCAAAAGCTATTAATATATTTATGGAA-GGTGGCCGTGATAT 347
|| || |||||||||| ||||||||| || | ||||| || ||||| |||||| |
Sbjct 312 TTTGCGAACCGCCCGAGATCAAAAGCCGTTCGTGGGCTTATG-AATGGTGGGCGTGATGT 370
Query 348 AATCTTTGGC-CCCTACGGAGAAGATTGGA-AGAGTATGAAGAGTCTGGGTGTGGTACA- 404
| |||| | ||||| |||||| |||||| | || ||||||||| | | | | ||
Sbjct 371 GGTGTTTG-CTCCCTATGGAGAATATTGGAGACAG-ATGAAGAGTGTATGCATTCT-CAA 427
Query 405 TCTGCTCAATAACAAAATGGTT-AGGTCCTTTGAGAACCTAAGAGAAGAAGAGATCAAA- 462
|||||||| |||||||||||| | ||||||||||| |||||||||||||| | ||
Sbjct 428 TCTGCTCACCAACAAAATGGTTGAA-TCCTTTGAGAAGGTAAGAGAAGAAGAGGT-AACT 485
Query 463 GTAATGACAGAGAAGCTGGAAGAA-GCATCTTCATCTTCTTCATCAGTAAATCTAAGC-A 520
| ||||| ||||||||||| ||| ||| || ||||||||||||| |||||| || |
Sbjct 486 GCAATGATGGAGAAGCTGGA-GAAAGCAAGTTGTTCTTCTTCATCAGAAAATCTGAGTGA 544
Query 521 AACTCCTTATGACTCTTACCAA-CGATATCAT-ATGCAGAATCACCTTGGGAAGAAAATA 578
|| || |||| ||||| ||||| |||| | | | | || | |||||||||||||| |
Sbjct 545 AA-TCTTTATTACTCT-ACCAAGCGATGTTACGA-GTAGGGTTGCCTTGGGAAGAAAACA 601
Query 579 TAACGAAGAGGAAGGTGGAATCGATATCAAGAA-CTTAGTGATG-ACATCCTCTGAGTTT 636
|| ||| || ||| | || ||| | ||||| | ||||| | | ||| | ||| ||
Sbjct 602 TAGCGAGGACGAAACCGCAAGGGATCTTAAGAAGCG-AGTGAGGCAGATCATG-GAGCTT 659
Query 637 TTTGGCAAATTCTTTTTTGGAGATTTTATTCCTAGTTTGGCATGGATAGACTGG-ATCAG 695
|| ||| | ||| | || || | | | || | ||||| ||||||||| ||| ||| |
Sbjct 660 TTAGGCGAGTTCCCGATCGGGGAATATGTCCCCATTTTGGGATGGATAGA-TGGGATCCG 718
Query 696 TGGCAT-AGATGATAAAATGAAGGACA-TAAATAACAAGTT-AGATTGTTTTT-TAGACA 751
||| | | || |||| || ||||| | | | | | ||| || | | || | ||||
Sbjct 719 TGGTTTCA-ATAATAAGATTAAGGA-AGTGAGTCGCGGGTTTAGC--GATCTTATGGACA 774
Query 752 GCA-TGGTGCAAGAACATGTT-GATGCCGATCACAA-AGAGCCATCAGATTTTATTGATA 808
| |||||||||||||| || || || || || || | | | | ||||| | ||||
Sbjct 775 A-AGTGGTGCAAGAACAT-TTAGAGGCGGA-CA-AACATAA--AGCGGATTTCGTGGATA 828
Query 809 TGTTGCTACTGATTC-AAAAGGATAA-AACCAAACGGTTT--AAGTTTGACAGA-AGTGA 863
| ||| || | | || |||| || || || || || || ||||| | ||| | ||
Sbjct 829 TATTGTTA-TCAATCGAAAAAGACAAGAAT-AAT-GGATTCCAAGTTCAA-AGAGAC-GA 883
Query 864 CTT-AATACTCAT-ACTCAAGGATATGTTTTTCTCTGGAACAG-CAACAACTGCCTCACA 920
| | || | | || | || |||||||||| | ||||| | |||||||| | | |
Sbjct 884 CATCAA-ATTTATGA-TCTTGGATATGTTTATAGGAGGAAC-GTCAACAACTTCGACTCT 940
Query 921 ATTAGAATGGACAATGACAGAGCTTATGAGACA-TCCAGAGTGTATGAAAAAACTTCAAG 979
| |||||||||||||||| || || || ||| | |||| || ||||||| || || ||||
Sbjct 941 ACTAGAATGGACAATGACGGAACTGATCAGA-AGTCCAAAGAGTATGAAGAATCTCCAAG 999
Query 980 ATGAGATTAATTCATT--TTCGAC-ACATAATTTGA-ATGTAACGGAGAAAGAAGTTGAG 1035
| |||||| ||| || | | |||| || | | ||| || |||||||||||
Sbjct 1000 ACGAGATTCGGTCAACCATTAGGCCACATGGTTC-ATACATAAAAGAAAAAGAAGTTGA- 1057
Query 1036 AAA-ATGAACTATTT-ACATTGC-GTGATTAAGGAGGGGCTACGGTTGCATCCCTCTGGT 1092
||| ||||| || || | | || |||||||| |||| ||| ||||||||||| ||| |
Sbjct 1058 AAATATGAAATACTTGAAA--GCCGTGATTAAAGAGGTGCTTCGGTTGCATCCTTCTCTT 1115
Query 1093 CCACT-ATTGTTC--AGACTACC-AAGTGAAGATGTCCAATTAAAGGGATATGACATTTC 1148
||| | || ||| ||||| | ||||||||||||| || ||||||||||| |||| |
Sbjct 1116 CCAATGATACTTCCCAGACT-CTTAAGTGAAGATGTCAAAGTAAAGGGATATAACATAGC 1174
Query 1149 TGCAGGGACACATGTCATAATCAATGCTTGGGC-ACTCCAACGAAAC-CCTGCGATATGG 1206
||||||||| | || || |||||||||||||| | |||||||| || || |||||||||
Sbjct 1175 CGCAGGGACAGAGGTGATCATCAATGCTTGGGCGA-TCCAACGAGACACC-GCGATATGG 1232
Query 1207 GGGCTTGATGCC-AATGAATAT-AGACCGGAGAGACATTTTGGTAC-GAATTTGGATT-T 1262
|| | ||||| || |||| | | |||||| ||||| || | | | | |||||||| |
Sbjct 1233 GGACCGGATGCTGAA-GAAT-TCAAACCGGAAAGACACTTAGATTCAGC-TTTGGATTAT 1289
Query 1263 CAACGT-ACTGATTCCAAATT-CGTTCCATTTGGAGCAGGGAGAAG-ACTTTG-CCCTGG 1318
|| || | || | || | | ||||||| || |||||||||| | |||| ||| ||
Sbjct 1290 CA-CGGGAAAAAT-CTGAACTACATTCCATTCGGTTCAGGGAGAAGGA-TTTGTCCCGGG 1346
Query 1319 AATCGGATTTT-CTTTGGTTTTGTCCAAAT-TGGCACTAGCCAACCTTGTGAAAC-GATT 1375
| | || || |||||| |||| | | | || || | ||||||||||| | | ||||
Sbjct 1347 A-TAA-ATCTTGCTTTGGGTTTGGC-AGAGGTGACAGTGGCCAACCTTGT-AGGCCGATT 1402
Query 1376 CAACTGGA-GACTCA-AGG-TCGGACCAG-TAGGAGATGATAAGCCTGATCTAGCTGAAG 1431
|||||| | | | ||| | |||||| | || ||| | | ||||||||||||||||
Sbjct 1403 TGACTGGAAGG-T-AGAGGCT-GGACCAAATGGG-GATCA-A--CCTGATCTAGCTGAAG 1455
Query 1432 C-ATCTGGTATTGATGTTTGTCGTAAGTTTCCTCTCATTGTC-TTTCCATC 1480
| || |||||| |||||||| || |||| ||||||||||| | ||||||||
Sbjct 1456 CCAT-TGGTATCGATGTTTGCCGCAAGTCTCCTCTCATTG-CATTTCCATC 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5