BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20260.4
Length=1082
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329544 jgi|Araly1|329544|fgenesh1_pm.C_scaffold_7001771 1037 0.0
> Ahg329544 jgi|Araly1|329544|fgenesh1_pm.C_scaffold_7001771
Length=675
Score = 1037 bits (561), Expect = 0.0
Identities = 644/683 (94%), Gaps = 10/683 (1%)
Strand=Plus/Plus
Query 127 ATGGGTTACTGGAATTCCAAGGTTGTTCCAAAATTCAAGAAGTTATTCGAGAAAAATAGT 186
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGGTTACTGGAATTCGAAGGTTGTTCCAAAGTTCAAGAAGTTATTTGAGAAAAATAGT 60
Query 187 GCTAAGAAGGCTGCTGCTGCTGAAGCTACCAAGACCTTTGATGAATCTAAGGAAACAATC 246
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GCTAAGAAGGCGGCTGCTGCTGAAGCTACCAAGACCTTTGATGAGTCTAAGGAAACAATC 120
Query 247 AACAAGGAAATTGAGGAGAAAAAGACAGAACTCCAACCAAAGGTCGTGGAAACCTATGAA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACAAGGAAATTGAGGAGAAAAAGACAGAACTCCAACCAAAGGTCGTGGAAACCTATGAA 180
Query 307 GCCACGTCTGCAGAAGTCAAGCAGGCTTTGGTGAGAGACCCTAAGGTGGCTGGTTTGAAG 366
||||||||||| ||||||||| | |||||||||||| |||||| | | |||||||||||
Sbjct 181 GCCACGTCTGCCGAAGTCAAG--G-CTTTGGTGAGAGCCCCTAATGAGTCTGGTTTGAAG 237
Query 367 AAAAACTCAGCGGCTGTGCAGAAGTACCTCGAGGAGCTAGTCAAAATTGAATTCCCCGGA 426
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 238 AAAAACTCAGCGGCTGTGCAGAAGTACCTCGAGGAGCTTGTCAAAATTGAATTCCCCGGA 297
Query 427 TCAAAAGCGGTGAGTGAGGCTTCGTCTAGCTTCGGAGCTGGCTATGTCGCAGGACCGGTC 486
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCAAAAGCGGTGAGTGAAGCGACGTCTAGCTTCGGAGCTGGCTATGTCGCAGGACCGGTC 357
Query 487 ACGTTCATATTCGAGAAGGTATCTGTTTTCCTCCCGGAGGAGGTGAAGACTAAAGAAATA 546
|| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 358 ACATTCATATTCGAGAAGGTATGTGTTTTCCTCCCTGAGGAGGTGAAGACAAAAGAAATA 417
Query 547 CCGGTGGAGGAAGTGAAAGCTGAAGAACCTGCCAAAACTGAAGAACCAGCCAAAACCGAA 606
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 418 CCGGTGGAGGAAGTGAAAACGGAAGAACCTGCCAAAACTGAAGAACCAGCCAAAACGGAA 477
Query 607 GGAAC-AAGTGGTGAGAAAGAGGAGATTGTTGAAGAGA-CAAAGAAAGGCGAGACCCCTG 664
| ||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 478 G-AACCAAGTGGTGAGAAAGAGGAGATTGTTGAAGAGGTCAA-GAAAGACGAGACCCCTG 535
Query 665 AAACCGCGGTCGTGGAGGAGAAGAAACCAGAGGTAGAGGAGAAGAAGGAAGAGGCTACTC 724
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 536 CTACCGCAGTCGTGGAGGAGAAGAAACCAGAGGTAGAGGAGAAGAAGGAAGAAGCTACTC 595
Query 725 CGGCTCCGGCAGTGGTTGAAACTCCAGTTAAGGAACCGGAGACAACGACGACAGCGCCAG 784
|||||||||| ||||||||||||||||||||||||||||| | | ||||||||||||| |
Sbjct 596 CGGCTCCGGCGGTGGTTGAAACTCCAGTTAAGGAACCGGA-A-A-CGACGACAGCGCCTG 652
Query 785 TGGCTGAACCACCAAAGCCTTGA 807
|||||||||||||||||||||||
Sbjct 653 TGGCTGAACCACCAAAGCCTTGA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40295923269
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5