BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20270.1
Length=3299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492844 jgi|Araly1|492844|fgenesh2_kg.7__2277__AT4G20270.1 5110 0.0
Ahg476729 jgi|Araly1|476729|fgenesh2_kg.2__1859__AT1G75820.1 187 4e-46
Ahg938262 jgi|Araly1|938262|scaffold_502453.1 58.4 3e-07
> Ahg492844 jgi|Araly1|492844|fgenesh2_kg.7__2277__AT4G20270.1
Length=3263
Score = 5110 bits (2767), Expect = 0.0
Identities = 3088/3244 (95%), Gaps = 18/3244 (1%)
Strand=Plus/Plus
Query 1 CCCAAAACATTAAAGCATGATGATGTCTAATGATGATGATCTTCTTCGTTCCATTTCTCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CCCAAAACATTAAAGCATGATGATGTCTAATGATGATGATCTTCTTCGATCCATTTCTCT 60
Query 61 AAATTTTTGGGATTTCTGCGAAGACCCTTCTTCTCTTTCTCTTCTCTGAACTTCAAGATT 120
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 AAAATTTTGGGATTTCTGCGAAGACCCTTCTTCTCTTTCACTTCTCTGAACTTCAAGATT 120
Query 121 CGTGTCGGACAAAtttttgtttttatttttCTGATGTTACAATGGCAGACAAGatcttca 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGTGTCGGACAAATTTTTATTTTTATTTTTCTGATGTTACAATGGCAGACAAGATCTTCA 180
Query 181 ctttcttcctaatcttgtcttcgatctctcctctcttatgctcttctttgatctcacctc 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTTCTTCTTAATCTTGTCTTCGATCTCTCCTCTCTTATGCTCTTCTTTGATCTCACCTC 240
Query 241 ttaatctctcACTTATTAGACAAGCAAATGTCCTTATCTCTCTAAAGCAAAGTTTTGATT 300
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 241 TTAATCTCTCACTAATTAGACAAGCAAAAGTCCTTATCTCTCTAAAGCAAAGCTTTGATT 300
Query 301 CCTATGATCCTTCTCTTGATTCATGGAACATTCCAAATTTCAACTCTCTATGTTCTTGGA 360
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 301 CCTATGATCCTTCTCTTGATTCATGGAACATTCCAAATTTCAATTCTCTCTGTTCTTGGA 360
Query 361 CTGGTGTTTCTTGTGACAACTTGAATCAGTCTATTACTCGTCTAGACCTATCTAATCTCA 420
|||||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||
Sbjct 361 CTGGTGTTTCTTGTGACAGCTTGAATCAGTCCATTACTCGTCTAGACATCTCTAATCTCA 420
Query 421 ACATCTCCGGCACTATCTCTCCGGAAATATCTCGTCTTTCGCCGTCACTTGTTTTTCTTG 480
|||||||||| ||| |||| |||||||| || |||||||||||||| || ||||||||||
Sbjct 421 ACATCTCCGGGACTCTCTCGCCGGAAATCTCCCGTCTTTCGCCGTCTCTCGTTTTTCTTG 480
Query 481 ACATTTCTTCTAACAGTTTCTCCGGTGAGCTTCCTAAAGAGATCTATGAGCTCTC-AGGC 539
|| ||||||| ||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 481 ACGTTTCTTCAAACAGTTTCTCCGGTCAGCTTCCTAAAGAGATCTATGAGCTCTCTA-GC 539
Query 540 CTCGAAGTGTTAAACATCTCTAGCAATGTTTTTGAAGGAGAGCTGGAGACACGTGGGTTC 599
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 540 CTCGAAGTGTTAAACATCTCTAGCAATGTTTTTGAAGGAGAGCTTGAGTCACGTGGACTC 599
Query 600 AGTCAAATGACTCAGCTTGTGACTCTTGACGCTTACGACAACAGCTTCAACGGATCACTT 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTCAAATGACGCAGCTTGTGACTCTTGACGCTTACGACAACAGCTTCAACGGATCACTT 659
Query 660 CCTCTGAGTCTAACCACACTCACTCGTCTCGAGCACTTAGATCTTGGAGGAAACTACTTC 719
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTCCCAGTCTGACCACACTCACTCGTCTCGAGCACTTAGATCTTGGAGGAAACTACTTC 719
Query 720 GACGGTGAGATCCCTAGAAGCTATGGAAGTTTCTTGAGTCTCAAGTTTCTTTCTTTATCT 779
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 720 GACGGTGAGATCCCTAGAAGCTATGGAAGTTTCTTGTGTCTCAAGTTTCTTTCTTTATCT 779
Query 780 GGTAATGATCTCCGTGGGAGAATCCCTAACGAGCTAGCGAACATCACGACTTTGGTACAG 839
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 780 GGTAATGATCTCCGTGGGAGAATCCCTAACGAGCTAGGGAACATCACAACTTTGGTACAG 839
Query 840 CTTTACTTAGGTTACTACAACGATTACCGCGGTGGGATACCTGCAGATTTCGGGAGATTG 899
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 CTTTACTTAGGTTACTTCAACGATTACCGCGGCGGGATACCTGCAGATTTCGGGAGATTG 899
Query 900 ATCAATCTTGTTCATTTGGATTTAGCTAATTGCAGCTTGAAAGGATCAATTCCTGCAGAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ATCAATCTTGTTCATTTGGATTTAGCTAATTGCAGCTTGAAAGGATCAATTCCTGCAGAA 959
Query 960 TTGGGGAATCTCAAGAACTTGGAGGTTCTGTTTCTTCAGACCAATGAGCTTACAGGCTCT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTGGGGAATCTCAAGAACTTGGAGGTTCTGTTTCTTCAGACCAATGAGCTTACAGGCTCT 1019
Query 1020 GTTCCTCGAGAGTTAGGGAACATGACAAGCCTCAAGACTCTTGATCTCTCCAACAACTTT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1020 GTTCCTCGAGAGTTAGGGAACATGACAAGCCTCAAGACTCTTGATCTCTCTAACAACTTT 1079
Query 1080 CTTGAAGGAGAGATTCCTCTAGAGCTATCTGGACTTCAAAAGCTTCAGTTGTTTAACCTC 1139
|| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 1080 CTAGAAGGAGAGATTCCTCTGGAGCTATCTGGTCTTCAAAAGCTTCAGTTGTTTAATCTC 1139
Query 1140 TT-CTTCAACAGACTACACGGCGAGATCCCTGAGTTCGTATCTGAGCTTCCTGATCTGCA 1198
|| || ||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||
Sbjct 1140 TTTCT-CAACAGATTACACGGCGGGATCCCTGAGTTCGTATCTCAACTTCCTGATCTGCA 1198
Query 1199 AATACTCAAGCTTTGGCACAACAATTTCACCGGAAAGATTCCTTCGAAACTCGGATCAAA 1258
||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1199 AATTCTCAAGCTTTGGCACAACAATTTCACCGGAACGATTCCTCCGAAACTCGGAACAAA 1258
Query 1259 CGGGAACTTGATCGAGATCGATTTGTCTACCAATAAACTCACAGGTTTGATCCCTGAGTC 1318
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1259 CGGGAAGTTGATCGAGATCGATTTGTCTACCAATAAGCTCACAGGTTTGATCCCTGAGTC 1318
Query 1319 ACTCTGTTTCGGAAGAAGACTAAAGATTCTCATTCTCTTCAACAACTTCTTGTTCGGTCC 1378
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 1319 GCTTTGTTTCGGAAGAAGACTGAAGATTCTCATTCTATTCAACAACTTCTTGTTTGGTCC 1378
Query 1379 TCTCCCTGAAGATCTTGGCCAATGTGAACCGCTATGGAGATTCCGTCTCGGACAGAACTT 1438
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct 1379 TCTCCCTGAAGATCTTGGCGAATGTGAGCCGCTATGGAGATTCCGTCTTGGACAGAACTT 1438
Query 1439 TCTGACAAGTA-AGTTGCCAAAGGGTTTGATTTATTTGCCGAATCTTTCGCTTCTTGAGC 1497
||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1439 TCTGACAAGTAGA-TTGCCAAAGGGTTTGATTTATTTGCCGAATCTTGAGCTTCTTGAGC 1497
Query 1498 TTCAAAACAACTTTTTGACTGGAGAAATCCCCGAAGAAGAGGCGGGAAATGCGCAGTTTT 1557
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1498 TTCAAAACAACTTCTTGACTGGAGAAATTCCCGAAGAAGAGGCGGGAAATGCGCGGTTTT 1557
Query 1558 CGAGCCTTACTCAGATCAATCTGTCCAACAACAGGTTATCCGGACCGATTCCTGGTTCAA 1617
|||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct 1558 CGAGCCTTACTCAGATCAATTTGTCCAACAACCGGTTATCCGGACCTATTCCTGGTTCAA 1617
Query 1618 TCAGAAACCTCAGAAGCCTTCAGATTCTTCTTC-TCGGTGCAAACCGGTTATCGGGACAG 1676
||||||||||||||||||||||||||||| ||| | || | ||||||||||||||||||
Sbjct 1618 TCAGAAACCTCAGAAGCCTTCAGATTCTT-TTCCTTGGCGGGAACCGGTTATCGGGACAG 1676
Query 1677 ATCCCTGGCGAAATCGGAAGTTTGAAGAGTCTTCTCAAGATTGACATGAGCAGAAACAAC 1736
||||| || |||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1677 ATCCCCGGTGAAATCGGAACTTTGAAGAGTCTTTTCAAGATTGACATGAGCAGAAACAAC 1736
Query 1737 TTCTCAGGCAAGTTTCCTCCTGAGTTTGGTGATTG-CATGTCACTCACATATTTAGATTT 1795
||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 1737 TTCTCAGGCAAGTTTCCTCCTGAGTTTGGTGATTGTC-TGTCACTCACATACTTAGATTT 1795
Query 1796 GAGTCACAACCAGATTTCCGGTCAGATTCCGGTTCAGATATCGCAGATTCGGATTCTAAA 1855
|||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1796 GAGTCATAACCAGATCTCCGGTCAGATTCCGGTTCAGATTTCACAGATTCGGATTCTAAA 1855
Query 1856 CTATCTGAATGTTTCTTGGAATTCCTTTAACCAAAGCCTTCCCAACGAACTCGGATACAT 1915
||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 1856 CTATCTGAACGTTTCTTGGAATTTATTAAACCAAAGCTTTCCCAACGAACTCGGATACAT 1915
Query 1916 GAAGAGTTTAACATCAGCAGATTTCTCACACAACAACTTCTCCGGTTCAGTACCAACTTC 1975
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1916 GAAGAGCTTAACATCAGCAGATTTCTCACACAACAACTTCTCCGGTTCAGTGCCAACTTC 1975
Query 1976 AGGGCAATTCTCTTACTTCAACAACACGTCATTCCTTGGAAACCCTTTTCTCTGTGGATT 2035
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1976 AGGGCAATTCTCTTACTTCAACAACACGTCATTCCTTGGAAACCCTTTCCTCTGTGGCTT 2035
Query 2036 TTCTTCAAACCCTTGCAACGGTTCCCAAAACCAATCTCAATCTCAGCTACTTAACCAGAA 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TTCTTCAAACCCTTGCAACGGTTCCCAAAACCAATCTCAATCTCAGCTACTTAACCAGAA 2095
Query 2096 CAACGCAAGATCCCGA-GGTGAAATCTCCGCAAAATTCAAGTTGTTCTTCGGGTTAGGCC 2154
|||| ||| ||||| | || ||||||| |||||||||||| ||||||||||||||||||
Sbjct 2096 CAACACAAAATCCC-ATGGCGAAATCTTTGCAAAATTCAAGCTGTTCTTCGGGTTAGGCC 2154
Query 2155 TACTAGGGTTTTTCTTGGTGTTCGTCGTTTTAGCTGTGGTCAAGAATAGGAGAATGAGAA 2214
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2155 TACTAGGGTTTTTCTTGGTGTTCGTTGTTTTAGCTGTGGTCAAGAATAGGAGAATGAGAA 2214
Query 2215 AGAACAACCCGAATTTATGGAAGCTTATAGGGTTTCAGAAGCTCGGTTTCAGAAGCGAAC 2274
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2215 GGCACAACCCGAATTTATGGAAGCTTATAGGGTTTCAGAAGCTCGGATTCAGAAGCGAAC 2274
Query 2275 ACATATTAGAATGTGTTAAAGAGAACCATGTGATTGGGAAAGGCGGA-CGAGGGATTGTC 2333
||||||||||||||||||||| ||||||||||||||| ||||| || | ||||||||||
Sbjct 2275 ACATATTAGAATGTGTTAAAGGGAACCATGTGATTGGTAAAGGTGGTGC-AGGGATTGTC 2333
Query 2334 TACAAAGGGGTAATGCCAAACGGAGAAGAAGTTGCAGTCAAGAAGCTCTTAACCATAACC 2393
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 TACAAAGGCGTAATGCCAAACGGAGAAGAAGTTGCAGTCAAGAAGCTCTTAACCATAACC 2393
Query 2394 AAAGGATCATCTCATGACAACGGTTTAGCCGCAGAGATTCAGACATTAGGTAGAATCAGA 2453
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2394 AAAGGATCATCTCACGACAACGGTTTAGCCGCAGAGATACAGACATTAGGTAGAATCAGA 2453
Query 2454 CACAGAAACATAGTGAGATTGCTCGCTTTTTGTTCAAACAAAGACGTGAATCTCCTTGTT 2513
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2454 CACAGAAACATAGTGAGATTGCTCGCTTTTTGTTCCAACAAAGACGTGAATCTCCTTGTT 2513
Query 2514 TACGAGTATATGCCTAATGGTAGCCTCGGAGAAGTCTTGCACGGGAAAGCTGGAGTGTTT 2573
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2514 TACGAGTATATGCCTAATGGTAGCCTCGGAGAAGTCTTGCACGGAAAAGCTGGAGTGTTC 2573
Query 2574 TTGAAATGGGAAACACGGTTGCAAATAGCGTTGGAAGCGGCTAAGGGGTTGTGTTATCTT 2633
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2574 TTGAAATGGGAAACGCGGTTGCAAATAGCTTTGGAAGCGGCTAAGGGGTTGTGTTATCTT 2633
Query 2634 CACCATGATTGCTCGCCACTTATAATCCACCGTGATGTGAAGTCAAACAACATCTTGTTG 2693
||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2634 CACCACGATTGCTCACCACTTATAATTCACCGTGATGTTAAGTCAAACAACATCTTGTTG 2693
Query 2694 GGTCCTGAGTTTGAAGCTCATGTTGCTGATTTTGGGCTTGCTAAGTTTATGATGCAAGAC 2753
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2694 GGTCCTGAGTTTGAAGCTCATGTTGCTGATTTTGGGCTAGCTAAGTTTATGATGCAAGAC 2753
Query 2754 AATGGAGCTTCCGAGTGCATGTCCTCGATCGCTGGCTCGTACGGCTACATCGCTCCAGAA 2813
||||||||||| ||||| |||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 2754 AATGGAGCTTCAGAGTGTATGTCCTCAATCGCAGGCTCATATGGCTACATCGCTCCAGAA 2813
Query 2814 TATGCATATACACTGAGAATAGACGAGAAGAGCGATGTGTACAGCTTCGGAGTAGTGTTA 2873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 TATGCATATACACTGAGAATAGACGAGAAGAGCGATGTGTACAGCTTCGGAGTAGTGTTA 2873
Query 2874 TTGGAGCTGATTACGGGTCGAAAACCAGTAGATAATTTTGGGGAAGAAGGGATAGACATT 2933
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2874 TTGGAGCTGATTACGGGTCGAAAACCAGTAGATAACTTTGGGGAAGAAGGGATAGACATT 2933
Query 2934 GTGCAATGGTCAAAGATCCAAACAAACTGTAACAGACAAGGTGTGGTGAAGATCATTGAC 2993
|| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 2934 GTACAATGGTCAAAGATTCAGACTAACTGTAACAGACAAGGTGTGGTGAAGATCATTGAC 2993
Query 2994 CAGAGATTGAGCAATATTCCATTAGCAGAGGCCATGGAACTGTTCTTTGTGGCAATGCTA 3053
||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||
Sbjct 2994 CAGAGATTGAGCAATATTCCATTAGGAGAAGCCATGGAACTGTTTTTTGTCGCAATGCTA 3053
Query 3054 TGTGTGCAAGAACATAGTGTTGAGAGACCGACCATGAGAGAGGTTGTCCAGATGATCTCT 3113
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3054 TGTGTTCAAGAACATAGTGTTGAGAGACCGACCATGAGAGAGGTTGTCCAGATGATTTCT 3113
Query 3114 CAGGCTAAACAGCCTAATACTTTCTAAATGCAGTGATgttatatatataagagactaaat 3173
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 3114 CAGGCTAAACAGCCTAATACTTTCTAAATGCAGTGATGTTATATATATAAAA-ATTAAAT 3172
Query 3174 atatatttttctgttttatgtgtttcatagagttttgtttttagaatttg-tAATGATG- 3231
|||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||
Sbjct 3173 ATATATTTTTCTGTTTTATGTGTTTCATAGAGTTTTTTTTTTAGAATTTGGTGAT-ATGA 3231
Query 3232 GTTT 3235
||||
Sbjct 3232 GTTT 3235
> Ahg476729 jgi|Araly1|476729|fgenesh2_kg.2__1859__AT1G75820.1
Length=3398
Score = 187 bits (101), Expect = 4e-46
Identities = 389/522 (75%), Gaps = 44/522 (8%)
Strand=Plus/Plus
Query 2427 GAGATTCAGACATTAGGTAGAATCAGACACAGAAACATAGTGAGA-TTGCTCGCTTTTTG 2485
|||||||| || || || |||||| | ||| | ||||||||||| || || | || |
Sbjct 2502 GAGATTCAAACTTTGGGAAGAATCCGCCACCGTCACATAGTGAGACTT-CTTG-GTTACG 2559
Query 2486 T-TCAAACAAAGACGTGAATCTCCTTGTTTACGAGTATATGCCTAATGGTAGCCTCGGAG 2544
| | ||||| || |||||| ||| | || ||||| |||||||| || ||||| ||||
Sbjct 2560 TAGCGAACAAGGATACGAATCTTCTTCTCTATGAGTACATGCCTAACGGAAGCCTTGGAG 2619
Query 2545 AAG-TCTTGCACGG---GAAAGCTGGAGTGTTTTTGAAATGGGAAACACGGTTG-CA-A- 2597
|| | ||||| || |||| | | || | || |||||| | || | | || |
Sbjct 2620 -AGCTTTTGCATGGATCTAAAGGT-G-GTCATCTT-CAATGGG--AGAC-G-AGACATAG 2671
Query 2598 A-TAG-CGTTGGAAGCGGCTAAGGGGTTGTGTTATCTTCACCATGATTGCTCGCCACTT- 2654
| ||| || ||||||| || ||||| |||||||||||||| ||||| || || ||| ||
Sbjct 2672 AGTAGCCG-TGGAAGCTGCAAAGGGCTTGTGTTATCTTCATCATGACTGTTCACCA-TTG 2729
Query 2655 ATAATCCACCGTGATGTGAAGTCAAACAACA-TCTTGTTGGGTC-CTGAGTTTGAAGCTC 2712
|| | || | ||||| ||||| || |||| |||| || || | |||| |||||||| |
Sbjct 2730 ATCTTGCATAGAGATGTTAAGTCCAATAACATTCTT-TT-GGACTCTGATTTTGAAGCCC 2787
Query 2713 ATGTTGCTGATTTTGGGCTTGCTAAGTT-T-ATGATGCAAGACAATGGAGCTTCCGAGTG 2770
|||||||||||||||||||||||||||| | | | || | | || ||||| |||||
Sbjct 2788 ATGTTGCTGATTTTGGGCTTGCTAAGTTCTTA-G-TGGATGG---TGCTGCTTCTGAGTG 2842
Query 2771 CATGTCCTCGATCGCTGGCTCGTACGGCTACATCGCTCCAGAATATGCATATACACT-GA 2829
||||| || || |||||||| || || |||||||| ||||| ||||||||||| || ||
Sbjct 2843 TATGTCTTCTATTGCTGGCTCTTATGGATACATCGCCCCAGAGTATGCATATAC-CTTGA 2901
Query 2830 GAA-TAGACGAGAAGAGCGATGTGTACAGCTTCGGAGTAGTGTTATTGGAGCTGATTAC- 2887
|| | ||||||||||| |||||||| || |||||||| || || |||||| | || |
Sbjct 2902 -AAGTGGACGAGAAGAGTGATGTGTATAGTTTCGGAGTGGTTTTGTTGGAGTTAATCGCT 2960
Query 2888 GGGTCGAAAACCAGTAGAT-AATTTTGGGGAAGAAG-GGATA 2927
||| |||| || || | | ||||| || |||| || |||||
Sbjct 2961 GGGAAGAAA-CCTGTTGGTGAATTT-GGAGAAGGAGTGGATA 3000
> Ahg938262 jgi|Araly1|938262|scaffold_502453.1
Length=2381
Score = 58.4 bits (31), Expect = 3e-07
Identities = 42/47 (89%), Gaps = 2/47 (4%)
Strand=Plus/Plus
Query 2825 ACTGAG-AATAGAC-GAGAAGAGCGATGTGTACAGCTTCGGAGTAGT 2869
||| || ||| ||| | ||||||||||||||||||||||||||||||
Sbjct 1885 ACTCAGCAATTGACGGTGAAGAGCGATGTGTACAGCTTCGGAGTAGT 1931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124524378856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5