BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20280.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890140 jgi|Araly1|890140|Al_scaffold_0007_2126 933 0.0
> Ahg890140 jgi|Araly1|890140|Al_scaffold_0007_2126
Length=636
Score = 933 bits (505), Expect = 0.0
Identities = 599/642 (93%), Gaps = 15/642 (2%)
Strand=Plus/Plus
Query 168 ATGAAGCATTCAAAGGATCCGTTTGAAGCAGCGATTGAGGAAGAGCAAGAGGAATCGCCA 227
|||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct 1 ATGAAGCATTCAAAGGATCCGTTTGAGGCAGCAATTGAGGAGGAACAAGAGGAATCGCCA 60
Query 228 CCGGAATCACCCGTT------GGC---GGAGGAGGAGGAGGTGATGGTAGTGAAGACGGA 278
||||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 61 CCGGAATCACCCGTTGGCGGCGGCGGAGGAGGAGGAGGAGGTGATGGTAGTGAAGAGGGA 120
Query 279 CGAATTGAAATCGACCAGACTCAAGATGAAGATGAGAGACCTGTGGATGTTCGCCGTCCG 338
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 CGAATTGAAATTGACCAGACTCAAGAAGAAGATGAGAGGCCTGTGGATGTTCGCCGTCCG 180
Query 339 ATGAAGAAAGCTAAAACCTCTGTTGTTGTTACTGAAGCTAAGAACAAAGATAAAGATGAA 398
|||||||| ||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 181 ATGAAGAAGGCTAAAACCTCCGTTGTTGTTACTGAAGCTAAGAACAAAGAT---GAT--- 234
Query 399 GATGATGAAGAAGAGGAAGAGAATATGGATGTTGAGCTTACTAAATATCCAACTAGTTCT 458
||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 235 GATGACGAAGAAGAGGAAGAGAACATGGAAGTTGAGCTCACTAAATATCCAACTAGTTCT 294
Query 459 GATCCTGCTAAAATGGCCAAAATGCAAACCATATTATCGCAATTCACTGAGGATCAGATG 518
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 295 GATCCTGCTAAAATGGCCAAAATGCAAACCATTTTATCACAATTCACTGAGGATCAGATG 354
Query 519 AGTAGATATGAATCTTTTAGGAGATCTGCACTTCAAAGACCACAGATGAAGAAGTTATTG 578
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 355 AGTAGATATGAATCTTTTAGGAGATCTGCACTTCAAAGACCACAAATGAAGAAGTTACTG 414
Query 579 ATAGGTGTCACTGGTAGTCAGAAGATTGGTATGCCAATGATTATTGTTGCGTGTGGTATT 638
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 415 ATAGGTGTCACTGGGAGTCAGAAGATTGGTATGCCAATGATTATTGTTGTGTGTGGTATT 474
Query 639 GCAAAGATGTTCGTTGGTGAACTCGTTGAAACAGCTCGAGTTGTTATGGCGGAAAGGAAA 698
|| |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 475 GCTAAGATGTTTGTTGGTGAACTTGTGGAAACAGCTCGAGTTGTTATGGCGGAAAGGAAA 534
Query 699 GAATCAGGACCTATCAGACCTTGTCATATCAGGGAGTCTTATCGGAGACTAAAGCTCGAA 758
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 535 GAATCAGGACCTATCAGACCTTGTCATATCAGGGAGTCCTATCGGAGACTGAAGCTCGAA 594
Query 759 GGAAAAGTGCCTAAAAGATCAGTTCCACGCCTTTTCCGCTAG 800
||||||||||||||||||||||||||||| || |||||||||
Sbjct 595 GGAAAAGTGCCTAAAAGATCAGTTCCACGGCTCTTCCGCTAG 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5