BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20300.2
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946143 jgi|Araly1|946143|scaffold_702372.1 1764 0.0
> Ahg946143 jgi|Araly1|946143|scaffold_702372.1
Length=1097
Score = 1764 bits (955), Expect = 0.0
Identities = 1048/1090 (96%), Gaps = 17/1090 (2%)
Strand=Plus/Plus
Query 358 GGTTTTCACTTGGGTATAATGATGAGGTATCAGAGAGTAAGCCCAGATTGTCTTCCTCTC 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GGTTTTCACTTGGGTATAATGATGAGGTATCAGAGAGTAAGCCCAGATTGTCTTCCTCTT 63
Query 418 ACAAATGGAGGTAAGAAGCCTTACTTACGACCATCACCATCAAGAGCAACAAACGAAGAC 477
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 64 ACAAATGGAGGTAAGAAGCCATACTTGCGACCATCACCTTCAAGAGCAACAAACGAAGAC 123
Query 478 ACCACCACCACCACCGTCATTACCACAACCTCAATCGCCGGAAGAGGATTTAACGGCGGA 537
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 124 ACCACCACCACCACCGTTATTACCACAACTTCCATCGCCGGAAGAGGATTTAACGGCGGA 183
Query 538 TCATGCACAACCACCACCAACAACACCTCATCTCTAGACGGAGTCCCCAAAGGATTCCGA 597
|||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 184 TCATGCACAACCACCA-C--CAACACCTCATCTTTAGACGGAGTCCCCAAAGGATTCCGA 240
Query 598 TTCAGATCCACTCAACAGCAGCAACAACAACAAGATCCTAGTCCTAGCCGTCGCGGCGGT 657
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCAGATCCACTC--CA-CAACAACAACAACAAGATCCTAGTCCTAGCCGTCGCGGCGGA 297
Query 658 GATGTACTGTTACAGTGGGGACAACGAAAACGATCGAGAGCCTCTAGAGCTGAGATCCGA 717
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 GATGTACTGTTACAGTGGGGACAACGAAAGCGATCGAGAGCCTCTAGAGCTGAGATCCGA 357
Query 718 TCCACCACCACCATCACAACCACCGCCGATGATTCTTCGTCTTCTTCAGGTCAAGGTAAG 777
|||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 TCCACCACCA-C--CACAACCACCGCCGATGATTCTTCGTCTTCTTCAGGACAAGGTAAG 414
Query 778 ATACAATCAAACAAAC-CGCAAAGAAGATCGATGAATCCTTCTATGCCACCTCCACCACC 836
|| ||||| ||||| | | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 415 ATTCAATCTAACAAGCTC-CAAAGAAGATCGATGAATCCTTCTATGCCACCACCACCACC 473
Query 837 AGCTCCGCCGATTTTCTCGGGCCGGAGTACAAACCCTAGAAACGGTTTCGTTATCGGCAA 896
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGCTCCGCCGATTTTCTCTGGCCGGAGTACAAACCCTAGAAACGGTTTCGTTATCGGCAA 533
Query 897 GGAATCTTTCTTCCCTTCCAGGAATCTAGAAGATCGATCAGCAAACGGATCACCATCAAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGAATCTTTCTTCCCTTCCAGGAATCTAGAAGATCGATCAGCAAACGGATCACCATCAAG 593
Query 957 GAACAACATAAACGGCCGTATGATATCCAGATCGGGTGGCTCAAAGCGATCTCCACCGTC 1016
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GAACAACATCAACGGCCGTATGATATCCAGATCGGGTGGCTCAAAGCGATCTCCACCGTC 653
Query 1017 ACCAGACCAAATCGAGAAGAGATCAAGCGTTAGAGATCAGAGACAAAACGGGTTTG---A 1073
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 654 TCCAGACCAAATCGAGAAGAGATCAAGCGTTAGAGATCACAGACAAAACGGGTTTGATCA 713
Query 1074 TCATCA--A-CAACAACAACATCAAAGAGTGAACAGATCAGAATCAACGGCTCAGGGTCA 1130
|||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCATCATCATCAACAACAACACCAAAGAGTGAACAGATCAGAATCAACGGCTCAGGGTCA 773
Query 1131 TCAAGAAGTGGAGATAAATGGAGAAAGAGAGAAAGCAACGCAAGAGTGGCCGAGGATCTA 1190
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 774 TCAAGAAGTGGAGATAAATGGAGAAAGAGAGAAAGCAACGCAAGAGTGGCCAAGGATCTA 833
Query 1191 CATTGCTTTGTCTAGGAAAGAGAAGGAAGAAGATTTCTTGGTTATGAAAGGAACTAAGCT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CATTGCTTTGTCTAGGAAAGAGAAGGAAGAAGATTTCTTGGTTATGAAAGGAACTAAGCT 893
Query 1251 TCCTCATAGACCCAGGAAACGAGCTAAGAACATTGATAAAGCCCTTCAGTTTTGTTTTCC 1310
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 894 TCCTCATAGACCCAGGAAACGAGCTAAGAACATTGATAAAGCCCTCCAGTTTTGTTTTCC 953
Query 1311 AGGGATGTGGTTATCTGATTTGACCAAGAACCGTTATGAAGTTAGGGAGAAGAAAAATGT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 AGGGATGTGGTTATCTGATTTGACCAAGAACCGTTATGAAGTTAGGGAGAAGAAAAATGT 1013
Query 1371 GAAGAAGCAGCAGAAACGGAGAGGATTGAAAGGCATGGAGAATATGGACACCGACTCCGA 1430
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1014 GAAGAAGCAGCAGAAACGGAGAGGATTGAAAGGCATGGAGAATTTGGACACCGACTCTGA 1073
Query 1431 GTAAAttttt 1440
||||||||||
Sbjct 1074 GTAAATTTTT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5