BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20310.2
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492840 jgi|Araly1|492840|fgenesh2_kg.7__2273__AT4G20310.1 1546 0.0
> Ahg492840 jgi|Araly1|492840|fgenesh2_kg.7__2273__AT4G20310.1
Length=1520
Score = 1546 bits (837), Expect = 0.0
Identities = 1034/1125 (92%), Gaps = 29/1125 (3%)
Strand=Plus/Plus
Query 65 AGATTCCGAAGAGATCACCTCACCGGCGGCGAGAACATTGAAAACGAAGCCTCGTGTTGC 124
|||||||||||||||| |||| |||||||||| |||||||||| ||||||||| || |||
Sbjct 28 AGATTCCGAAGAGATCGCCTCGCCGGCGGCGATAACATTGAAAGCGAAGCCTCATGCTGC 87
Query 125 TATTGTGACCTCAAAATCTCGAATTTCAACGAACCCATCTTCCGTTTAGGACGACGATTC 184
|| || || ||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 88 TACTGCGATTTCAAAATCTCGAATTTCAACGAACCCATCTTCCGTCTCGGACGACGATTC 147
Query 185 TCCGGAGTTTTGAAAGTCTGGTTCTCAATCGGACTAGGATTCGGCGTCGCTTCTCTGATC 244
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 148 TCCGGAGTGATGAAAGTCTGGTTCTCAATCGGACTCGGATTCGGCGTCGCTTCTCTAATC 207
Query 245 CTCGTCACCGTCTTCCTTCTCCTTCAGTTTCACT-CTAACCCTTTATTCTCCAATCGTCT 303
||||||||||||||||| |||||||||||||| | | ||||| |||||||||||||||||
Sbjct 208 CTCGTCACCGTCTTCCTGCTCCTTCAGTTTCA-TCCAAACCCATTATTCTCCAATCGTCT 266
Query 304 CACTTCCGCCGTATTTGGATTCTCTCCTTCCACGCGTGTATCATTATCAGGCATTGCCTA 363
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 267 CTCTTCCGCCGTATTTGGATTCTCTCCTTCCACGCGTGTATCATTATCCGGCATTGCCTA 326
Query 364 TGTACTT-GTCTCCACTGTCATTACAGTTTCAGTTCATGAACTTGGTCACGCTCTTGCTG 422
||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 327 TGT-GTTAGTTTCCACTGTCATTACTGTTTCAGTTCATGAACTTGGTCATGCTCTTGCTG 385
Query 423 CTGCTAGTGAAGGAATACAGATGGAATACATTGCCGTTTTCATTGCAGCTATCTTTCCGG 482
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 386 CTGCTAGTGAAGGAATACAGATGGAATACATTGCCGTTTTCATTGCAGCTATATTTCCGG 445
Query 483 GTGGTCTTGTAGCTTTTGATAATGATGTCTTGCAATCACTTCCAAGCTTTAATGCTCTTC 542
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GAGGTCTCGTAGCTTTTGATAATGATGTCTTGCAATCACTTCCAAGCTTTAATGCTCTTC 505
Query 543 GTATTTACTGTGCCGGTATTTGGCATAATGCAGTGTTCTGTGCACTCTGTGTGTTCGCTT 602
||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 506 GTATTTACTCTGCCGGTATTTGGCATAATGCTGTGTTATGTGCACTCTGCGTGTTCGCGT 565
Query 603 TGTTTCTCTTGCCTGTTATGTTGTCACCTTTCTACAAACACGGTGAAAGCCTCACGGTTG 662
||||| | |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 566 TGTTTTTATTGCCTGTTATGTTTTCTCCGTTCTACAAACACGGTGAAAGCCTCACGGTTG 625
Query 663 TGGATGTGCCTTCTGTGTCGCCATTGTTTGGTTACTTGTCTCCTGGAGATGTTATTGTGT 722
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TGGATGTGCCTTCTATGTCGCCATTGTTTGGTTACTTGTCTCCTGGAGATGTTATTGTGT 685
Query 723 CGTTGGATGGCATACAAGTCCACAAACCTAGTGAATGGCTTGAATTGGCAGCAATTTTGG 782
|||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||
Sbjct 686 CGTTGGATGGCATACAAGTCCATAAACCTAGTGAATGGCTTGAACTGGCAGCGATTTTGG 745
Query 783 ATAAGGAAAATAGT-AAAACATCGAATGGTTCCTTGTACCTTGGAGGTTCAAGGAGATTT 841
|||||||||| ||| |||| ||| |||| ||||||||| |||||||||||||||||||||
Sbjct 746 ATAAGGAAAACAGTGAAAA-ATCAAATGCTTCCTTGTATCTTGGAGGTTCAAGGAGATTT 804
Query 842 CATCACGGGAAGGGTTACTGTGTCCCTATCTCTCTGATTGAAGAAGGGTACAAAGGGAAA 901
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 805 CATCACGGGAAGGGTTACTGTGTCCCTATCTCTCTGATTGAAGAAGGGTTGAAA-GGAAA 863
Query 902 -ATGGTTGAGAACCAATTTGTTTGTCCCGGTGATCTCACTGCATTTCGAACAATGCCATG 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TATGGTTGAGAACCAATTTGTTTGTCCCGGTGATCTCACTGCATTTCGAACAATGCCATG 923
Query 961 CTCAAATGCAGCCATAAGAGAGGTATCTGTTTGTTTGGATGCAAAGGATATCGTCAAGCT 1020
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 924 CTCAAATGCAGCCCTGAGAGAGGTTTCTGTTTGTTTGGATGCAAAGGATATCGTCAAGCT 983
Query 1021 TCAA-AAATGTGGTGATGGATGGGTGACAACATCAGACACCGATAACCAAAGTGACTGCG 1079
| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 984 T-AGCAAATGTGGTGATGGATGGGTGACAACATCAGACACCGATAGCAAAAGTGACTGCG 1042
Query 1080 TATGTCCACAGGGTGACTTGTGCTTACAAGCAATGCAATCTCCAGGCGTATTGTGGACAG 1139
||||||||||| | | | |||||||||||||||||| |||||||
Sbjct 1043 TATGTCCACAG-----C--------A-A-----TGCAATCTCCAGGCGTATCATGGACAG 1083
Query 1140 AGATCACTTATAAAAGAACCTCGTCACAGGATTGCTCTAGACTTG 1184
||||||| ||||||| || ||| |||||| |||| ||||||||||
Sbjct 1084 AGATCACCTATAAAAAAAACTCATCACAGAATTGTTCTAGACTTG 1128
Score = 494 bits (267), Expect = 1e-138
Identities = 299/315 (95%), Gaps = 0/315 (0%)
Strand=Plus/Plus
Query 1184 GTTCATTTAACCGCATATCAACCTCGTTGGCTATTTAACTTCTTTGGAAAGTCCTTCCCG 1243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GTTCATTTAACCGCATACCAACCTCGTTGGCTATTTAACTTCTTTGGAAAGTCCTTCCCG 1262
Query 1244 AATATCCTAGAAAGAAGCTTGACTTGCACATTCCATGTCTCTCTTGCACTAGTTCTTCTG 1303
|||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1263 GATATTCTAGAAAGAAGCTTGACCTGCACATTCCATGTCTCTCTTGCGCTAGTTCTTCTG 1322
Query 1304 AACAGCTTACCCGTGTATTACCTTGATGGTGAATCCATTTTAGAGTCAAGTCTCCAGTCT 1363
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1323 AACAGCTTACCGGTGTATTACCTTGATGGTGAATCAATTTTAGAGTCCAGTCTCCAGTCT 1382
Query 1364 TTTACTTGGTTAAGCCCAAGAAAGAAGAAGAAAGCTCTTCAAGTTTGCCTTGTTGGTGGG 1423
||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 1383 TTTACTTGGTTAAGCCCAAGAAAGAAGAAAAAAGCTCTTCAAGTATGTCTTGTTGGAGGC 1442
Query 1424 AGTCTCCTCTCTTTCCTCGCCTTCTTCAGAATCTTCCTCCTCGGTTTACCTCTGAGCCGC 1483
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1443 AGCCTCCTCTCTTTCCTCGCCTTCTTCAGAATCTTCCTCGTCGGTTTACCTCTGAGCCAC 1502
Query 1484 CGATGGTAAATGCCC 1498
|||||||||||||||
Sbjct 1503 CGATGGTAAATGCCC 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5