BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20320.1 Length=2347 Score E Sequences producing significant alignments: (Bits) Value Ahg946140 jgi|Araly1|946140|scaffold_702369.1 2928 0.0 Ahg936038 jgi|Araly1|936038|scaffold_500229.1 676 0.0 Ahg943524 jgi|Araly1|943524|scaffold_604068.1 294 2e-78 > Ahg946140 jgi|Araly1|946140|scaffold_702369.1 Length=1834 Score = 2928 bits (1585), Expect = 0.0 Identities = 1745/1824 (96%), Gaps = 3/1824 (0%) Strand=Plus/Plus Query 80 GGAA-GAAGATGAAGTATGTGGTTGTTTCAGGAGGAGTAGTGAGTGGACTCGGCAAAGGA 138 |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 12 GGAAGGAAGATGAAGTATGTGGTTGTCTCAGGAGGAGTAGTGAGTGGACTCGGAAAAGGA 71 Query 139 GTCACGGCAAGTAGCATCGGACTCATCCTCAAATCCTGTGGCTTCCGAGTCACCGCCATT 198 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 GTCACGGCAAGTAGTATCGGACTCATCCTCAAATCCTGTGGCTTCCGAGTCACCGCCATT 131 Query 199 AAAATCGATCCTTACTTAAACATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAA 258 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 132 AAAATAGATCCTTACTTAAATATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAA 191 Query 259 GTTTACGTCTTGGATGATGGTGGCGAGGTTGATCTGGATCTTGGGAACTATGAGAGGTTC 318 |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 192 GTTTACGTCTTGGACGATGGTGGCGAGGTTGATCTTGATCTTGGGAACTATGAGAGGTTC 251 Query 319 ATGGATATTAAGCTGACTAGTGAAAACAACATAACTACTGGAAAAGTTTATAAGCATGTG 378 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 252 ATGGATATTAAGCTGACCAGTGAAAACAACATAACTACCGGAAAAGTTTATAAGCATGTG 311 Query 379 CTTGAGAAAGAGAGGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCATATT 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 312 CTTGAGAAAGAGAGGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCATATT 371 Query 439 ACTGATGCTATTCAAAAATGGATTGAGCGTGCAGCTAGGATTCCAGTGGATGGACAGTCA 498 ||||||||||||||| |||||||||||||||| ||||||||||| || |||||||||||| Sbjct 372 ACTGATGCTATTCAAGAATGGATTGAGCGTGCTGCTAGGATTCCTGTAGATGGACAGTCA 431 Query 499 GGTCCAGCTGATGTTTGTGTCATAGAACTTGGAGGAACTATAGGAGATATAGAGTCCATG 558 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 432 GGTCCAGCTGATGTTTGTGTCATTGAACTTGGAGGAACTATAGGAGATATAGAGTCCATG 491 Query 559 CCTTTTATTGAAGCTCTTGGGCAGTTCTCATATCGCGTGGGCACTGACAATTTTTGCTTG 618 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 492 CCTTTTATTGAAGCTCTTGGGCAGTTCTCATACCGCGTAGGCACTGACAATTTTTGCTTG 551 Query 619 ATCCATGTCAGTCTTGTGCCTGTATTGAATGTTGTTGGTGAACAGAAGACTAAACCAACT 678 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 552 ATCCATGTCAGTCTTGTGCCTGTATTGAATGTTGTTGGTGAACAGAAGACTAAACCAACG 611 Query 679 CAACATAGCGTTAGAGACTTAAGAGGCCTTGGCTTGAGCCCTAATATCTTGGCTTGCCGG 738 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 CAACATAGCGTTCGAGACTTAAGAGGCCTTGGCTTGAGCCCTAATATCTTGGCTTGCCGA 671 Query 739 AGCACAAAGCCACTTGAAGATAATGTGAAGGCCAAACTCTCTCAGTTTTGCCATGTCCCG 798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 AGCACAAAGCCACTTGAAGATAATGTGAAGGCCAAACTCTCTCAGTTTTGCCATGTCCCG 731 Query 799 ATGGAAAACGTTGTCACTCTCTACGATTGTCCCAACATTTGGCACATACCATTGCTTCTC 858 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 732 ATGGAAAACGTTGTCACTCTCTACGATTGTCCCAACATTTGGCACATTCCATTGCTTCTC 791 Query 859 AAAGAACAAAAGGCACACGAGGCTATTTTCCGTGTCTTGAACCTTGAAGGAGTTGCAAAG 918 ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||| Sbjct 792 AAAGAACAAAAGGCACACGAGGCGATTTTGCGTGTCTTGAACCTTAAAGGAGTTGCAAAG 851 Query 919 GAGCCTGCATTAGAGGAATGGTCTTTGATGGCTAAAATGACCGACAAATTGCATGTTCCG 978 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 852 GAGCCTGCATTAGAGGAATGGTCTTTGATGGCTAAAATGACAGACAAGTTGCATGTTCCG 911 Query 979 GTAAGAATTGCTGTGGTTGGGAAATACACTGAGCTCTTGGATTCGTATCTTTCCATTCAC 1038 |||||||||||||||||||| ||||| |||||||| |||||||| ||||| || |||||| Sbjct 912 GTAAGAATTGCTGTGGTTGGAAAATATACTGAGCTTTTGGATTCTTATCTGTCGATTCAC 971 Query 1039 AAGGCTCTCTTGCACGCTTCTGTGGCTAGGCGCAAGAAACTTATCATAGATTGGATTTCA 1098 |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| Sbjct 972 AAGGCTCTCTTGCACGCTTCTGTGGCAAGGGGCAAGAAACTTGTCATAGATTGGATTTCA 1031 Query 1099 GCTAGTGATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGGATGCATATAAGGCCGCCTGG 1158 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1032 GCTAGTGATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGAATGCATATAAGGCCGCCTGG 1091 Query 1159 AAGTTACTCAAGGGTGCTGATGGCGTTCTTGTGCCGGGAGGTTTTGGCAGTAGAGGTGTA 1218 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 1092 AAGTTACTCAAGGGTGCTGATGGTATTCTTGTGCCGGGAGGTTTTGGCAATAGAGGTGTA 1151 Query 1219 GAAGGAAAGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAATTCCATACCTTGGTATC 1278 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 1152 GAAGGAAAGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAGTTCCATACCTCGGTATC 1211 Query 1279 TGTCTAGGTATGCAACTCGCTGTGATCGAGTATGCAAGAACCATACTCGGTTTGGCAGAT 1338 |||||||| ||||||||||||||||| |||| ||| ||||| |||| |||||| ||||| Sbjct 1212 TGTCTAGGGATGCAACTCGCTGTGATTGAGTTTGCCAGAACTGTACTAGGTTTGCCAGAT 1271 Query 1339 GCAAATAGCACTGAACTTGATCCCAACACCAAAAACCCCTGTGTTATTTTCATGCCTGAG 1398 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1272 GCAAACAGCACTGAACTTGATCCCAACACCAAAAACCCATGTGTTATTTTCATGCCTGAG 1331 Query 1399 GGGTCGAAAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACTTATTTTCAT 1458 || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1332 GGCTCGAAAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACCTACTTTCAG 1391 Query 1459 TCTAAGGACTCCAAATCAGCAAGACTATATGGGAACAAAAGTTTTGTAGATGAAAGACAC 1518 ||||| |||||||||||||||| |||||||||||||| | |||||||||||||||||||| Sbjct 1392 TCTAAAGACTCCAAATCAGCAAAACTATATGGGAACAGAGGTTTTGTAGATGAAAGACAC 1451 Query 1519 CGACACAGATATGAGGTGAATCCAGCCATGGTTCCACGTTTTGAGAGCTCTGGACTCACA 1578 ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| Sbjct 1452 CGACACAGATATGAGGTAAATCCAGACATGGTTCCACGTTTCGAGAGCTCTGGACTCACA 1511 Query 1579 TTCACAGGAAAAGACGAGACAGGG-CAGCGAATGGAGATCATTGAACTGCCTAACCATCC 1637 |||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||| ||||| Sbjct 1512 TTCACAGGAAAAGATGAGAC-GGGTCAGCGAATGGAGATCTTTGAACTGCCTAATCATCC 1570 Query 1638 GTTTTACGTCGGAGCTCAGTTCCATCCCGAGTACAAATCAAGACCCGGAAAACCATCTCC 1697 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1571 GTTTTACATTGGAGCTCAGTTCCATCCCGAGTACAAATCAAGACCCGGAAAACCATCTCC 1630 Query 1698 TCTGTTTCTAGGACTAATTGGAGCAGCTAGTGGAGAACTAGACACTGTTCTGCTACAAAG 1757 |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||| Sbjct 1631 TCTGTTTCTAGGACTAATTGGAGCAGTTAGTGGAGAACTAGACACTGTACTGCAACAAAG 1690 Query 1758 CTACCAAGAAACCGTCGTTCCACGTTCTCTACCCAACGGAAAACTAGAGAGAGTTTACTG 1817 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1691 CTGCCAAGAAACCGTCGTTCCACGTTCTCTACCCAACGGAAAACTTGAGAGAGTTTACTG 1750 Query 1818 GAAAGGTGCAGCGAAGAAGCCAGTCAGTGTTGTGTACAGTTTATGTGATCGTGTCTACTC 1877 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1751 GAAAGGTGCAGCGAAAAAGCCAGTCAGTGTTGTGTACAGTTTATGTGATCGTGTCTACTC 1810 Query 1878 GTGAACACCGTATCTGCATCAACA 1901 |||||| | | |||||||||||| Sbjct 1811 ATGAACAACATCTCTGCATCAACA 1834 > Ahg936038 jgi|Araly1|936038|scaffold_500229.1 Length=574 Score = 676 bits (366), Expect = 0.0 Identities = 418/444 (94%), Gaps = 0/444 (0%) Strand=Plus/Plus Query 1046 TCTTGCACGCTTCTGTGGCTAGGCGCAAGAAACTTATCATAGATTGGATTTCAGCTAGTG 1105 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 52 TCTTGCACGCTTCTGTGGCTAGGTGCAAGAAACTTGTCATAGATTGGATTTCAGCTAGTG 111 Query 1106 ATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGGATGCATATAAGGCCGCCTGGAAGTTAC 1165 ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 112 ATCTTGAGCAAGGTGTAAAAAAAGAGAATCCGGATGCATATAAGGCCGCCTGGAAGTTAC 171 Query 1166 TCAAGGGTGCTGATGGCGTTCTTGTGCCGGGAGGTTTTGGCAGTAGAGGTGTAGAAGGAA 1225 |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 172 TCAAGGGTGCTGATGGTATTCTTGTGCCGGGAGGTTTTGGCAATAGAGGTGTAGAAGGAA 231 Query 1226 AGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAATTCCATACCTTGGTATCTGTCTAG 1285 ||||| ||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| Sbjct 232 AGATGTTGGCAGCAAAATACGCTAGAGAAAACAGAGTTCCATACCTCGGTATCTGTCTAG 291 Query 1286 GTATGCAACTCGCTGTGATCGAGTATGCAAGAACCATACTCGGTTTGGCAGATGCAAATA 1345 | ||||| || ||||||||||||| |||||||||| ||||||||||| |||||||||||| Sbjct 292 GGATGCAGCTTGCTGTGATCGAGTTTGCAAGAACCGTACTCGGTTTGCCAGATGCAAATA 351 Query 1346 GCACTGAACTTGATCCCAACACCAAAAACCCCTGTGTTATTTTCATGCCTGAGGGGTCGA 1405 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | Sbjct 352 GCACTGAACTTGATCCCAACACCAAGAACCCTTGTGTTATTTTCATGCCTGAGGGGTCTA 411 Query 1406 AAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACTTATTTTCATTCTAAGG 1465 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 412 AAACGCATATGGGAGGCACTATGAGATTAGGCTCAAGAAGAACTTATTTTCAAGCTAAGG 471 Query 1466 ACTCCAAATCAGCAAGACTATATG 1489 ||||||||||||||| ||| |||| Sbjct 472 ACTCCAAATCAGCAAAACTGTATG 495 > Ahg943524 jgi|Araly1|943524|scaffold_604068.1 Length=1714 Score = 294 bits (159), Expect = 2e-78 Identities = 494/649 (76%), Gaps = 49/649 (8%) Strand=Plus/Plus Query 86 AGATGAAGTATGTGGTT-GTTTCAGGAGGAGTAGTGAGTGGACTCGGCAAAGGAGTCACG 144 |||||||||| || || || | |||||||| || ||||| || |||||||| || || Sbjct 19 AGATGAAGTACGT-ATTGGTGACTGGAGGAGTGGTTAGTGGGCTTGGCAAAGGCGTTACC 77 Query 145 GCAAGTAGCATCGGAC-TCATCCTCAAATCCTGTGG-CTTCCGAGTCACCGCCATTAAAA 202 || ||||| ||||| | || | || ||| | ||||| ||| ||||| ||| ||||||||| Sbjct 78 GCCAGTAGTATCGG-CGTCGTGCTTAAAGCTTGTGGCCTT-CGAGTTACCTCCATTAAAA 135 Query 203 TCGATCCTTACTTAAACATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAAGTTT 262 | |||||||| || |||| ||||||||| || ||||| ||| |||| ||||| || |||| Sbjct 136 TTGATCCTTATTTGAACACTGATGCTGGTACTATGTCCCCTTTTGAGCATGGAGAGGTTT 195 Query 263 ACGT-CTTGGATGATGGTGGCGAGGTTGATCTGGATCTT-GGGAACTATGAGAG-GTTCA 319 || | | ||||||||||| ||||||||||| ||| || |||||||| || || ||| Sbjct 196 TTGTAC-TCGATGATGGTGGAGAGGTTGATCTTGAT-TTGGGGAACTACGAAAGATTTC- 252 Query 320 TGGATATTA-AGCTGACTAGTGAAAACAACATAACTACT-GGAAAAGTTTATAAG-CATG 376 | ||| | | | || || | || ||||||||||| ||| |||| | | ||| || | || Sbjct 253 TCGATGTGACA-CTAACCAAAGACAACAACATAACCACTGGGAAGA-TATATCAGTC-TG 309 Query 377 TGCTTGAGAAAGAGA-GGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCAT 435 | |||||||| || | ||| ||| || ||||||||||||||||||||||||||||| || Sbjct 310 TCCTTGAGAAGGA-ACGGAAAGGCGACTATCTTGGGAAGACTGTTCAGGTTGTTCCACAC 368 Query 436 ATTACTGATGCTATTCAAAAAT-GGATTGAG-C-GTG-CAGCTAGGATTCCAGTGGATGG 491 ||||||||||| || ||| || |||||||| | || | || | ||||| |||||||| Sbjct 369 ATTACTGATGCAAT-CAAGGATTGGATTGAGTCAGTTTCT-CT-G-ATTCCTGTGGATGG 424 Query 492 ACA-GTCAGGTCCA-GCTGATGTTTGTGTCATAGAACTTGGA-GGAACTATAGGAGATAT 548 | | | ||| ||| |||||||||||||| || || |||| || ||| | || || || Sbjct 425 A-ATGGAAGG-CCAAGCTGATGTTTGTGTTATTGAG-TTGGGCGGGACTGTTGGTGACAT 481 Query 549 AGAGTCCATGCCTTTTATTGAAGCTCTTGGG-CAGTTCTCATATCGC-GTGGGCACTG-A 605 || || ||||||||||| || || |||| | || || |||| || | || || || | | Sbjct 482 CGAATCAATGCCTTTTATCGAGGC-CTTGAGACAATTGTCAT-TCTCAGTTGG-ACCGGA 538 Query 606 CAATTTTTGCTTGATCCATGTCAGTCTTG-TGCCTGTAT-TGAATGTTGTTGGTGAACAG 663 ||||| ||| |||| || || || |||| | || || | || ||||||||| || ||| Sbjct 539 AAATTTCTGCCTGATTCACGTGAG-CTTGATTCCCGT-TCTGGGTGTTGTTGGGGAGCAG 596 Query 664 AAGACTAAA-CCAACTCAACATAGCGTTAGAGA-CTTAAGAGGCCTTGG 710 || || ||| ||||| ||||| || || |||| || ||||| | |||| Sbjct 597 AAAAC-AAAGCCAACCCAACACAGTGTCCGAGAACT-AAGAG-CTTTGG 642 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88407458645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5