BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20320.1
Length=2347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946140 jgi|Araly1|946140|scaffold_702369.1 2928 0.0
Ahg936038 jgi|Araly1|936038|scaffold_500229.1 676 0.0
Ahg943524 jgi|Araly1|943524|scaffold_604068.1 294 2e-78
> Ahg946140 jgi|Araly1|946140|scaffold_702369.1
Length=1834
Score = 2928 bits (1585), Expect = 0.0
Identities = 1745/1824 (96%), Gaps = 3/1824 (0%)
Strand=Plus/Plus
Query 80 GGAA-GAAGATGAAGTATGTGGTTGTTTCAGGAGGAGTAGTGAGTGGACTCGGCAAAGGA 138
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 12 GGAAGGAAGATGAAGTATGTGGTTGTCTCAGGAGGAGTAGTGAGTGGACTCGGAAAAGGA 71
Query 139 GTCACGGCAAGTAGCATCGGACTCATCCTCAAATCCTGTGGCTTCCGAGTCACCGCCATT 198
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GTCACGGCAAGTAGTATCGGACTCATCCTCAAATCCTGTGGCTTCCGAGTCACCGCCATT 131
Query 199 AAAATCGATCCTTACTTAAACATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAA 258
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 132 AAAATAGATCCTTACTTAAATATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAA 191
Query 259 GTTTACGTCTTGGATGATGGTGGCGAGGTTGATCTGGATCTTGGGAACTATGAGAGGTTC 318
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 192 GTTTACGTCTTGGACGATGGTGGCGAGGTTGATCTTGATCTTGGGAACTATGAGAGGTTC 251
Query 319 ATGGATATTAAGCTGACTAGTGAAAACAACATAACTACTGGAAAAGTTTATAAGCATGTG 378
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 252 ATGGATATTAAGCTGACCAGTGAAAACAACATAACTACCGGAAAAGTTTATAAGCATGTG 311
Query 379 CTTGAGAAAGAGAGGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCATATT 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CTTGAGAAAGAGAGGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCATATT 371
Query 439 ACTGATGCTATTCAAAAATGGATTGAGCGTGCAGCTAGGATTCCAGTGGATGGACAGTCA 498
||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 372 ACTGATGCTATTCAAGAATGGATTGAGCGTGCTGCTAGGATTCCTGTAGATGGACAGTCA 431
Query 499 GGTCCAGCTGATGTTTGTGTCATAGAACTTGGAGGAACTATAGGAGATATAGAGTCCATG 558
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 432 GGTCCAGCTGATGTTTGTGTCATTGAACTTGGAGGAACTATAGGAGATATAGAGTCCATG 491
Query 559 CCTTTTATTGAAGCTCTTGGGCAGTTCTCATATCGCGTGGGCACTGACAATTTTTGCTTG 618
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 492 CCTTTTATTGAAGCTCTTGGGCAGTTCTCATACCGCGTAGGCACTGACAATTTTTGCTTG 551
Query 619 ATCCATGTCAGTCTTGTGCCTGTATTGAATGTTGTTGGTGAACAGAAGACTAAACCAACT 678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 ATCCATGTCAGTCTTGTGCCTGTATTGAATGTTGTTGGTGAACAGAAGACTAAACCAACG 611
Query 679 CAACATAGCGTTAGAGACTTAAGAGGCCTTGGCTTGAGCCCTAATATCTTGGCTTGCCGG 738
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 CAACATAGCGTTCGAGACTTAAGAGGCCTTGGCTTGAGCCCTAATATCTTGGCTTGCCGA 671
Query 739 AGCACAAAGCCACTTGAAGATAATGTGAAGGCCAAACTCTCTCAGTTTTGCCATGTCCCG 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGCACAAAGCCACTTGAAGATAATGTGAAGGCCAAACTCTCTCAGTTTTGCCATGTCCCG 731
Query 799 ATGGAAAACGTTGTCACTCTCTACGATTGTCCCAACATTTGGCACATACCATTGCTTCTC 858
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 732 ATGGAAAACGTTGTCACTCTCTACGATTGTCCCAACATTTGGCACATTCCATTGCTTCTC 791
Query 859 AAAGAACAAAAGGCACACGAGGCTATTTTCCGTGTCTTGAACCTTGAAGGAGTTGCAAAG 918
||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||
Sbjct 792 AAAGAACAAAAGGCACACGAGGCGATTTTGCGTGTCTTGAACCTTAAAGGAGTTGCAAAG 851
Query 919 GAGCCTGCATTAGAGGAATGGTCTTTGATGGCTAAAATGACCGACAAATTGCATGTTCCG 978
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 852 GAGCCTGCATTAGAGGAATGGTCTTTGATGGCTAAAATGACAGACAAGTTGCATGTTCCG 911
Query 979 GTAAGAATTGCTGTGGTTGGGAAATACACTGAGCTCTTGGATTCGTATCTTTCCATTCAC 1038
|||||||||||||||||||| ||||| |||||||| |||||||| ||||| || ||||||
Sbjct 912 GTAAGAATTGCTGTGGTTGGAAAATATACTGAGCTTTTGGATTCTTATCTGTCGATTCAC 971
Query 1039 AAGGCTCTCTTGCACGCTTCTGTGGCTAGGCGCAAGAAACTTATCATAGATTGGATTTCA 1098
|||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 972 AAGGCTCTCTTGCACGCTTCTGTGGCAAGGGGCAAGAAACTTGTCATAGATTGGATTTCA 1031
Query 1099 GCTAGTGATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGGATGCATATAAGGCCGCCTGG 1158
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1032 GCTAGTGATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGAATGCATATAAGGCCGCCTGG 1091
Query 1159 AAGTTACTCAAGGGTGCTGATGGCGTTCTTGTGCCGGGAGGTTTTGGCAGTAGAGGTGTA 1218
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1092 AAGTTACTCAAGGGTGCTGATGGTATTCTTGTGCCGGGAGGTTTTGGCAATAGAGGTGTA 1151
Query 1219 GAAGGAAAGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAATTCCATACCTTGGTATC 1278
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1152 GAAGGAAAGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAGTTCCATACCTCGGTATC 1211
Query 1279 TGTCTAGGTATGCAACTCGCTGTGATCGAGTATGCAAGAACCATACTCGGTTTGGCAGAT 1338
|||||||| ||||||||||||||||| |||| ||| ||||| |||| |||||| |||||
Sbjct 1212 TGTCTAGGGATGCAACTCGCTGTGATTGAGTTTGCCAGAACTGTACTAGGTTTGCCAGAT 1271
Query 1339 GCAAATAGCACTGAACTTGATCCCAACACCAAAAACCCCTGTGTTATTTTCATGCCTGAG 1398
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1272 GCAAACAGCACTGAACTTGATCCCAACACCAAAAACCCATGTGTTATTTTCATGCCTGAG 1331
Query 1399 GGGTCGAAAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACTTATTTTCAT 1458
|| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1332 GGCTCGAAAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACCTACTTTCAG 1391
Query 1459 TCTAAGGACTCCAAATCAGCAAGACTATATGGGAACAAAAGTTTTGTAGATGAAAGACAC 1518
||||| |||||||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1392 TCTAAAGACTCCAAATCAGCAAAACTATATGGGAACAGAGGTTTTGTAGATGAAAGACAC 1451
Query 1519 CGACACAGATATGAGGTGAATCCAGCCATGGTTCCACGTTTTGAGAGCTCTGGACTCACA 1578
||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1452 CGACACAGATATGAGGTAAATCCAGACATGGTTCCACGTTTCGAGAGCTCTGGACTCACA 1511
Query 1579 TTCACAGGAAAAGACGAGACAGGG-CAGCGAATGGAGATCATTGAACTGCCTAACCATCC 1637
|||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||| |||||
Sbjct 1512 TTCACAGGAAAAGATGAGAC-GGGTCAGCGAATGGAGATCTTTGAACTGCCTAATCATCC 1570
Query 1638 GTTTTACGTCGGAGCTCAGTTCCATCCCGAGTACAAATCAAGACCCGGAAAACCATCTCC 1697
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 GTTTTACATTGGAGCTCAGTTCCATCCCGAGTACAAATCAAGACCCGGAAAACCATCTCC 1630
Query 1698 TCTGTTTCTAGGACTAATTGGAGCAGCTAGTGGAGAACTAGACACTGTTCTGCTACAAAG 1757
|||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||
Sbjct 1631 TCTGTTTCTAGGACTAATTGGAGCAGTTAGTGGAGAACTAGACACTGTACTGCAACAAAG 1690
Query 1758 CTACCAAGAAACCGTCGTTCCACGTTCTCTACCCAACGGAAAACTAGAGAGAGTTTACTG 1817
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1691 CTGCCAAGAAACCGTCGTTCCACGTTCTCTACCCAACGGAAAACTTGAGAGAGTTTACTG 1750
Query 1818 GAAAGGTGCAGCGAAGAAGCCAGTCAGTGTTGTGTACAGTTTATGTGATCGTGTCTACTC 1877
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 GAAAGGTGCAGCGAAAAAGCCAGTCAGTGTTGTGTACAGTTTATGTGATCGTGTCTACTC 1810
Query 1878 GTGAACACCGTATCTGCATCAACA 1901
|||||| | | ||||||||||||
Sbjct 1811 ATGAACAACATCTCTGCATCAACA 1834
> Ahg936038 jgi|Araly1|936038|scaffold_500229.1
Length=574
Score = 676 bits (366), Expect = 0.0
Identities = 418/444 (94%), Gaps = 0/444 (0%)
Strand=Plus/Plus
Query 1046 TCTTGCACGCTTCTGTGGCTAGGCGCAAGAAACTTATCATAGATTGGATTTCAGCTAGTG 1105
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 52 TCTTGCACGCTTCTGTGGCTAGGTGCAAGAAACTTGTCATAGATTGGATTTCAGCTAGTG 111
Query 1106 ATCTTGAGCAAGGTGCAAAAAAGGAGAATCCGGATGCATATAAGGCCGCCTGGAAGTTAC 1165
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 112 ATCTTGAGCAAGGTGTAAAAAAAGAGAATCCGGATGCATATAAGGCCGCCTGGAAGTTAC 171
Query 1166 TCAAGGGTGCTGATGGCGTTCTTGTGCCGGGAGGTTTTGGCAGTAGAGGTGTAGAAGGAA 1225
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 172 TCAAGGGTGCTGATGGTATTCTTGTGCCGGGAGGTTTTGGCAATAGAGGTGTAGAAGGAA 231
Query 1226 AGATGCTGGCAGCGAAATACGCCAGAGAAAACAGAATTCCATACCTTGGTATCTGTCTAG 1285
||||| ||||||| |||||||| |||||||||||| |||||||||| |||||||||||||
Sbjct 232 AGATGTTGGCAGCAAAATACGCTAGAGAAAACAGAGTTCCATACCTCGGTATCTGTCTAG 291
Query 1286 GTATGCAACTCGCTGTGATCGAGTATGCAAGAACCATACTCGGTTTGGCAGATGCAAATA 1345
| ||||| || ||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 292 GGATGCAGCTTGCTGTGATCGAGTTTGCAAGAACCGTACTCGGTTTGCCAGATGCAAATA 351
Query 1346 GCACTGAACTTGATCCCAACACCAAAAACCCCTGTGTTATTTTCATGCCTGAGGGGTCGA 1405
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 352 GCACTGAACTTGATCCCAACACCAAGAACCCTTGTGTTATTTTCATGCCTGAGGGGTCTA 411
Query 1406 AAACGCATATGGGAGGCACTATGAGGTTAGGCTCAAGAAGAACTTATTTTCATTCTAAGG 1465
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 412 AAACGCATATGGGAGGCACTATGAGATTAGGCTCAAGAAGAACTTATTTTCAAGCTAAGG 471
Query 1466 ACTCCAAATCAGCAAGACTATATG 1489
||||||||||||||| ||| ||||
Sbjct 472 ACTCCAAATCAGCAAAACTGTATG 495
> Ahg943524 jgi|Araly1|943524|scaffold_604068.1
Length=1714
Score = 294 bits (159), Expect = 2e-78
Identities = 494/649 (76%), Gaps = 49/649 (8%)
Strand=Plus/Plus
Query 86 AGATGAAGTATGTGGTT-GTTTCAGGAGGAGTAGTGAGTGGACTCGGCAAAGGAGTCACG 144
|||||||||| || || || | |||||||| || ||||| || |||||||| || ||
Sbjct 19 AGATGAAGTACGT-ATTGGTGACTGGAGGAGTGGTTAGTGGGCTTGGCAAAGGCGTTACC 77
Query 145 GCAAGTAGCATCGGAC-TCATCCTCAAATCCTGTGG-CTTCCGAGTCACCGCCATTAAAA 202
|| ||||| ||||| | || | || ||| | ||||| ||| ||||| ||| |||||||||
Sbjct 78 GCCAGTAGTATCGG-CGTCGTGCTTAAAGCTTGTGGCCTT-CGAGTTACCTCCATTAAAA 135
Query 203 TCGATCCTTACTTAAACATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAAGTTT 262
| |||||||| || |||| ||||||||| || ||||| ||| |||| ||||| || ||||
Sbjct 136 TTGATCCTTATTTGAACACTGATGCTGGTACTATGTCCCCTTTTGAGCATGGAGAGGTTT 195
Query 263 ACGT-CTTGGATGATGGTGGCGAGGTTGATCTGGATCTT-GGGAACTATGAGAG-GTTCA 319
|| | | ||||||||||| ||||||||||| ||| || |||||||| || || |||
Sbjct 196 TTGTAC-TCGATGATGGTGGAGAGGTTGATCTTGAT-TTGGGGAACTACGAAAGATTTC- 252
Query 320 TGGATATTA-AGCTGACTAGTGAAAACAACATAACTACT-GGAAAAGTTTATAAG-CATG 376
| ||| | | | || || | || ||||||||||| ||| |||| | | ||| || | ||
Sbjct 253 TCGATGTGACA-CTAACCAAAGACAACAACATAACCACTGGGAAGA-TATATCAGTC-TG 309
Query 377 TGCTTGAGAAAGAGA-GGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCAT 435
| |||||||| || | ||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct 310 TCCTTGAGAAGGA-ACGGAAAGGCGACTATCTTGGGAAGACTGTTCAGGTTGTTCCACAC 368
Query 436 ATTACTGATGCTATTCAAAAAT-GGATTGAG-C-GTG-CAGCTAGGATTCCAGTGGATGG 491
||||||||||| || ||| || |||||||| | || | || | ||||| ||||||||
Sbjct 369 ATTACTGATGCAAT-CAAGGATTGGATTGAGTCAGTTTCT-CT-G-ATTCCTGTGGATGG 424
Query 492 ACA-GTCAGGTCCA-GCTGATGTTTGTGTCATAGAACTTGGA-GGAACTATAGGAGATAT 548
| | | ||| ||| |||||||||||||| || || |||| || ||| | || || ||
Sbjct 425 A-ATGGAAGG-CCAAGCTGATGTTTGTGTTATTGAG-TTGGGCGGGACTGTTGGTGACAT 481
Query 549 AGAGTCCATGCCTTTTATTGAAGCTCTTGGG-CAGTTCTCATATCGC-GTGGGCACTG-A 605
|| || ||||||||||| || || |||| | || || |||| || | || || || | |
Sbjct 482 CGAATCAATGCCTTTTATCGAGGC-CTTGAGACAATTGTCAT-TCTCAGTTGG-ACCGGA 538
Query 606 CAATTTTTGCTTGATCCATGTCAGTCTTG-TGCCTGTAT-TGAATGTTGTTGGTGAACAG 663
||||| ||| |||| || || || |||| | || || | || ||||||||| || |||
Sbjct 539 AAATTTCTGCCTGATTCACGTGAG-CTTGATTCCCGT-TCTGGGTGTTGTTGGGGAGCAG 596
Query 664 AAGACTAAA-CCAACTCAACATAGCGTTAGAGA-CTTAAGAGGCCTTGG 710
|| || ||| ||||| ||||| || || |||| || ||||| | ||||
Sbjct 597 AAAAC-AAAGCCAACCCAACACAGTGTCCGAGAACT-AAGAG-CTTTGG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88407458645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5