BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20325.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329539 jgi|Araly1|329539|fgenesh1_pm.C_scaffold_7001766 1380 0.0
> Ahg329539 jgi|Araly1|329539|fgenesh1_pm.C_scaffold_7001766
Length=834
Score = 1380 bits (747), Expect = 0.0
Identities = 806/835 (97%), Gaps = 2/835 (0%)
Strand=Plus/Plus
Query 185 ATGAGTTCTACTGTTTGGTGGGAAGGAGCTGAGAAGACACGAGTTCTCATAGCCCCAGAT 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCTACTGTTTGGTGGGAAGGAACTGAGAAGACACGAGTTCTCATAGCCCCAGAT 60
Query 245 TCAGGTTGTGGCGGAAACAAACCCGGAGAACTGTTAACACTCCGCCATCCAAAATCAGAA 304
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAGGTTGTGGTGGAAACAAACCTGGAGAACTGTTAACACTCCGCCATCCAAAATCAGAA 120
Query 305 AATGGAACATGCTTCCTTTTTAATAATGAGATGCTTCAAGAACTTCAGTGGTTTAAGCAA 364
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 AATGGAACATGCTTCCTTTTTAATAATGAGATGATTCAAGAACTTCAGTGGTTTAAGCAA 180
Query 365 TCTTATGGTTCTTGGTTCTTGGGAGATTACATATCTGAAGATGGAAGCTTATATATGGCC 424
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TCATATGGTTCTTGGTTCTTGGGAGATTACATTTCTGAAGATGGAAGCTTATATATGGCC 240
Query 425 ACTCCAGTTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGAAA 484
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCCCGTTGATCCTGTTTTCATCTTGTTGCCTATTTTCGACGAAGCAAGAATGAAGAAA 300
Query 485 GGTGAAAATTCT-GGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGGAAGGATATCC 543
|||||| ||| | ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 301 GGTGAAGATT-TAGGAAAGTTCAGGCAACTGGATGAGATTTTATTTGTAGAAGGATATCC 359
Query 544 TGGATATCAACATTTGTTGTCACTTGCAGAGAAGTGTATGGAAATCGTTTGTCAAACTCA 603
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 TGGATATCAACATTTGTTGTCACTTGCAGAGAAATGTATGGAAATCGTTTGTCAAACTCA 419
Query 604 AGAGGTTGGATCGATGAAGTTCTATCGGCTTGATAACTCGAAAGTCTTAGCTTGGTTAAG 663
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGGTTGGATCTATGAAGTTCTATCGGCTTGATAACTCGAAAGTCTTAGCTTGGTTAAG 479
Query 664 TTGTAAGATCTACTGTTTAAAGAATTCTCTACCGGAATTGGACAAAAACTATGCAGCTCA 723
||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTAAGGTATACTGTTTAAAGAAGTCTCTACCGGAATTGGACAAAAACTATGCAGCTCA 539
Query 724 AGATGAGAAACAAACATTGGTAGATTCCGTCTCAATTGTAGGAGAGTACCTGAAGACCGA 783
||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||||
Sbjct 540 AGATGAGAAACAAACATTGATAGATGCCGTTTCAATTGTGGGAGAGTACCTGAAGACCGA 599
Query 784 GCCTTGGTTGAAGCTTCTATATGATCATCTTGGACTCAAATTTGTTGACCCGACGATGAA 843
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 600 GCCTTGGTTGAAGCTTCTATATGATCATCTTGGACTCAAATTTGTCGACCCGACAATGAA 659
Query 844 AGAAACCAATATGGAGAATCTTCCAACTGCAAATGAGAATAACATGGCATCATCAAATTC 903
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 AGAAACCAATATGGAGAATCTTCCAACTGCAAATGAGAATAACATGGCATCCTCAAATTC 719
Query 904 AATACAGGAGAAAGCGAATAAGAAGCCAGGAAAACAGACAAAGCAAGCAAAGGTAGAGAC 963
| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 720 ATTCCAGGAGAAAGCGAATAAGAAACCAGGAAAACAGACAAAGCAAGCAAAGGTTGAGAC 779
Query 964 TGGATCAAAGAACATAAGGGATATGTTTTCAAGGGCTTGTAAGAAAAAATGCTGA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGATCAAAGAACATAAGGGATATGTTTTCAAGGGCTTGTAAGAAAAAATGCTGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5