BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20350.2
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329536 jgi|Araly1|329536|fgenesh1_pm.C_scaffold_7001763 1125 0.0
> Ahg329536 jgi|Araly1|329536|fgenesh1_pm.C_scaffold_7001763
Length=726
Score = 1125 bits (609), Expect = 0.0
Identities = 687/726 (95%), Gaps = 0/726 (0%)
Strand=Plus/Plus
Query 355 ATGGAGTTAGAGAGATTCAGGGTAGGTCTTACTCCAACTGTATTCTACATTCCCGGTTTC 414
|||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1 ATGGAGTTAGAGAGCTTCAGGGTAGGTTTTACTCCAACAGTATTCTATATTCCCGGTTTC 60
Query 415 ATAACTGACGAAGAGCAAACTCAGCTCCTAAATCATATATATGGAGCATCTGGTTCCAAG 474
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ATAACTGAAGAAGAGCAAACTCAGCTACTAAATCATATATATGGAGCATCTGGTTCCAAG 120
Query 475 TGGAAGACATTAAAGAACAGAAGATTACAGAACTGGGGTGGTATGGTCCATGAAAAGGGT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAAGACATTAAAGAACAGAAGATTACAGAACTGGGGTGGTATGGTCCATGAAAAGGGT 180
Query 535 CTTGTTCCACAAGAGTTGCCTCCCTGGCTGACAAAGATAACAGCGGAAATTCATGAAAGC 594
||||||||||||||||| ||| |||||||||||||||| |||||| ||||| |||||||
Sbjct 181 CTTGTTCCACAAGAGTTACCTTCCTGGCTGACAAAGATTACAGCGAAAATTTGTGAAAGC 240
Query 595 TCGGGTCTGTTCCCTTCTGCTATAAATCATGTCCTCATCAATGAATACCATCCTGACCAA 654
||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 241 TCGGGTCTGTTTCCTTCTGTTATAAATCATGTCCTCATCAATGAATACCATCCTAACCAA 300
Query 655 GGGATTATGCCGCATCAAGATGGACCCGCTTACTTTCCTGTTGTAGCTATCTTGTCTCTT 714
||||| ||| |||| ||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 301 GGGATAATGGCGCACCAAGATGGACCTGCTTATTTTCCTGTTGTAGCTATATTGTCTCTT 360
Query 715 GGCTCACCTGTTGTTATGGACTTCACTCCGCATTTGAGATTAAGATCAGGCGATGGTTAC 774
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 GGCTCACCTGTCGTTATGGACTTCAGTCCGCATTTGAGATTAAGATCAGGCGATGGTTAC 420
Query 775 ATTTCCAAAGACCAAAGTCCCTGTGCAGAGAGTTGTGCCCCTGAGAGAGACTCATTCTCT 834
|| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 421 ATATCCAAAGACCAAAGTCCCTGTGCAGAGAGTTATGAGCCTGAGAGAGACTCATTCTCT 480
Query 835 GTCTTGTTGATGCCTCAAAGCTTACTCATCTTCAAAGATGACGCATATTCAGATTTCCTC 894
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCTTGATGATGCCTCGAAGCTTACTCATCTTCAAAGATGACGCATATTCAGATTTCCTC 540
Query 895 CACGGCATTAGCGATAGTCCAACACAATGTTACAACCAGGTCGTTAATGAAGCTGAAGCT 954
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 CACGGCATTAGCGATAGTCCAACACAATGCTACAACCAGGTCGTTAATGAAGCTGAAGCT 600
Query 955 TTGGCTTACTCTAACGAAGAAGATTCAAGAAAAGATGGTGACAAGATTTTTCACAGAGAC 1014
|||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 601 TTGGCTTACTCTAATGAAGAAGATTCAAGAAAAGATGGTGACAGGATTCTTCACAGAGAC 660
Query 1015 CAAACTCGAGTTTCACTTACTTGCCGTCTAGTTCCCAAAGTCCGTAAAAATCTCTTCAGA 1074
||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||| |
Sbjct 661 CAAACTCGAGTCTCACTTACTTGCCGTTTAGTTCCCAAAGTCCATAAGAATCTCTTCAAA 720
Query 1075 TTCTAG 1080
|| |||
Sbjct 721 TTTTAG 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5