BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20362.1
Length=416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492831 jgi|Araly1|492831|fgenesh2_kg.7__2264__AT4G20362.1 377 3e-104
> Ahg492831 jgi|Araly1|492831|fgenesh2_kg.7__2264__AT4G20362.1
Length=323
Score = 377 bits (204), Expect = 3e-104
Identities = 261/286 (91%), Gaps = 14/286 (5%)
Strand=Plus/Plus
Query 78 GTCTTGTTCTTGCTTCTAAACAAGAATCACTCCCAAGAGCTGGGAGAAGAATGAGGAGTT 137
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 50 GTCTTGTTCTTGCTTCTAAACAAGATTCACTTCCAAGAGCTGGGAGGAGAATGAGGAGTT 109
Query 138 ATCAAACAAATGGTGAGATCGATGCAGGCCCATCTTTCAGTGGCAGAGGTGGTGGTCGCA 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 ATCAAACAAATGGTGAGATCGATGCAGGCCCATCTTTCAGTGGCAGAGGTGGTGGTCGCA 169
Query 198 TTCCATAAGCTCTCTCTTTCCTCTTCTTCATTATCTCTTCACATTTCAACTTTCCTCTTT 257
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 170 TTCCATAAGCTCTCTCTTTCCTCTTCTTGATTATCTCTTCACATTTCAACTTTCCT---- 225
Query 258 AAGTTCTTTATGTTATATTCTGCAAT--CTCCTTGAATTGTTGATGTAATCTGCCCACAG 315
||| ||||| || | ||||||| | ||| |||||||||||||||||| ||||| |
Sbjct 226 --GTT-TTTAT---AT-T-CTGCAATTGCCCCTAGAATTGTTGATGTAATCTTCCCACTG 277
Query 316 TGGTTTCAAATTAAGTGATTGGTCGTTGAGTACCAAATCCACATCA 361
|||||||||| ||||||||||||||||||||||||||| || ||||
Sbjct 278 TGGTTTCAAACTAAGTGATTGGTCGTTGAGTACCAAATTCAAATCA 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14956990888
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5