BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20370.1
Length=799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890129 jgi|Araly1|890129|Al_scaffold_0007_2115 826 0.0
Ahg925616 jgi|Araly1|925616|scaffold_201177.1 499 1e-140
> Ahg890129 jgi|Araly1|890129|Al_scaffold_0007_2115
Length=528
Score = 826 bits (447), Expect = 0.0
Identities = 501/528 (95%), Gaps = 0/528 (0%)
Strand=Plus/Plus
Query 32 ATGTCTTTAAGTCGTAGAGATCCTCTTGTGGTCGGCAGTGTTGTTGGAGATGTTCTTGAT 91
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGTCTTTAAGTCGTAGAGATCCTCTTGTGGTGGGAAGTGTTGTTGGAGATGTTCTTGAT 60
Query 92 CCTTTCACGAGGTTGGTCTCTCTTAAGGTCACTTATGGCCATAGAGAGGTTACTAATGGC 151
||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 61 CCTTTCACGAGATTGGTCTCTCTTCGGGTCACTTATGGCCAAAGAGAGGTTACTAATGGC 120
Query 152 TTGGATCTAAGGCCTTCTCAAGTTCTGAACAAACCAATAGTGGAGATTGGAGGAGACGAC 211
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 121 TTGGATCTAAGGCCCTCTCAAGTTCTGAACAAACCAACAGTGGATATTGGAGGAGACGAC 180
Query 212 TTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAGTCCAAGCAACCCT 240
Query 272 CACCAACGAGAATATCTCCACTGGTTGGTGACTGATATACCTGCCACCACTGGAAATGCC 331
|||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |||
Sbjct 241 CACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATACCTGCCACAACTGGAACGGCC 300
Query 332 TTTGGCAATGAGGTGGTGTGCTACGAGAGTCCACGTCCCCCCTCGGGAATTCATCGTATT 391
||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 301 TTTGGCAATGAAGTGGTGTGCTACGAGAGTCCACGTCCACCCTCAGGAATTCACCGTATT 360
Query 392 GTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCACCGGGGTGGCGCCAA 451
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 361 GTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCGCCCGGGTGGCGCCAA 420
Query 452 CAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCTTCCTGTGGCTGCCTCT 511
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 421 CAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCTCCCTGTGGCTGCATCT 480
Query 512 TACTTCAACTGCCAGAGGGAGAATGGCTGTGGGGGAAGAAGAACGTAG 559
| |||||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct 481 TTCTTCAATTGCCAGAGGGAGAATGGCTGTGGAGGAAGAATAACGTAG 528
> Ahg925616 jgi|Araly1|925616|scaffold_201177.1
Length=568
Score = 499 bits (270), Expect = 1e-140
Identities = 458/548 (84%), Gaps = 15/548 (3%)
Strand=Plus/Plus
Query 23 AAGAT-AAATATGTCTTTAAGTCGT-AGAGATCCTCTTGTGGTCGGCAGTGTTGTTGGAG 80
||||| ||| |||||| ||| | | ||||| |||||| | || |||| ||||||||||
Sbjct 11 AAGATCAAAGATGTCTATAAAT-ATAAGAGACCCTCTTATAGTAAGCAGAGTTGTTGGAG 69
Query 81 ATGTTCTTGATCC-TTTCACGAGGTTGGTCTCTCTTAA-GGTCACTTATGGCCATAGAGA 138
| |||||||||| ||| | || | | |||||| ||| ||| ||||||||||| |||||
Sbjct 70 ACATTCTTGATCCGTTT-AATAGATCGATCTCTC-TAAGGGTTACTTATGGCCAAAGAGA 127
Query 139 GGTTACTAATGGCTTGGATCTAAGGCCTTCTCAAGTTCTGAACAAACCAATAGTGGAGAT 198
||| |||||||| ||||||||||||||||||||||| | |||||| |||| ||| |||||
Sbjct 128 GGTGACTAATGGTTTGGATCTAAGGCCTTCTCAAGTCCAGAACAAGCCAAGAGTTGAGAT 187
Query 199 TGGAGGAGACGACTTCAGAAATTTCTACACCTTGGTTATGGTGGATCCAGATGTGCCGAG 258
||| ||||| ||| |||| || |||||||| ||||||||||||||||||||||| || ||
Sbjct 188 TGGTGGAGAAGACCTCAGGAACTTCTACACTTTGGTTATGGTGGATCCAGATGTTCCTAG 247
Query 259 TCCAAGCAACCCTCACCAACGAGAATATCTCCACTGGTTGGTGACTGATATACCTGCCAC 318
||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 248 TCCTAGCAACCCTCACCTCCGAGAATATCTCCATTGGTTGGTGACTGATATCCCTGCTAC 307
Query 319 CACTGGAA-ATGCCTTTGGCAATGAGGTGGTGTGCTACGAGAGTCCACGTCCCCCCT-CG 376
||||||| | |||||||||||||| | ||||| ||||| | |||| || ||| || ||
Sbjct 308 AACTGGAACA-ACCTTTGGCAATGAGATTGTGTGTTACGAAAATCCAAGT-CCCACTGCG 365
Query 377 GGAATTCATCGTATTGTGTTGGTATTGTTCCGGCAACTCGGAAGACAAACGGTTTATGCA 436
|||||||||||||| ||| || ||||||| || || || || || ||||| || ||||||
Sbjct 366 GGAATTCATCGTATCGTGGTGATATTGTTTCGACAGCTTGGGAGGCAAACAGTGTATGCA 425
Query 437 CCGGGGTGGCGCCA-ACAGTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTTGGTCT 495
|| ||||||||||| | | ||||||||||||||||||||||||||||||||||| || ||
Sbjct 426 CCAGGGTGGCGCCAGA-ACTTCAACACTCGTGAGTTTGCTGAGATCTACAATCTCGGCCT 484
Query 496 TCCTGTGGCTGCC-TCTTACTTCAACTGCCAGAGGGAGAATGGCTGTGGGGGAAGAAGAA 554
||| ||||| || | || || |||||| |||||||||| |||||| || ||||||||||
Sbjct 485 TCCCGTGGCCGCGGTTTT-CTACAACTGTCAGAGGGAGAGTGGCTGCGGAGGAAGAAGAA 543
Query 555 CGTAGATG 562
||||||
Sbjct 544 TTTAGATG 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29507137758
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5