BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20380.8
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492829 jgi|Araly1|492829|fgenesh2_kg.7__2262__AT4G20380.4 887 0.0
Ahg891336 jgi|Araly1|891336|Al_scaffold_0007_3322 296 2e-79
> Ahg492829 jgi|Araly1|492829|fgenesh2_kg.7__2262__AT4G20380.4
Length=989
Score = 887 bits (480), Expect = 0.0
Identities = 569/611 (93%), Gaps = 9/611 (1%)
Strand=Plus/Plus
Query 571 AGCGCACTCCAATCAGGTTGCCCATGCTCCTTCCAGTCAGGTTGCGCAGATCAATTGTGG 630
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 383 AGCGCACTCCAATCAGGTTGCCCATGCACCTTCCAATCAGGTTGCGCAGATCAATTGTGG 442
Query 631 GCATTGTCGGACGACCCTCATGTATCCTTACGGTGCATCATCCGTCAAATGCGCTGTTTG 690
||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 443 ACATTGTCGGACAACCCTCATGTATCCTTACGGTGCATCATCTGTTAAATGCGCTGTTTG 502
Query 691 TCAATTCGTAACTAACGTTAATATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCC 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TCAATTCGTAACTAACGTTAATATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCC 562
Query 751 AAATGGAACAGCTTGTCCCCCCTCTACAT--CAACTTCAACACCACCCTCTCAGACCCAA 808
||||||| ||||||||||| | | || | ||||||||||||||||||||||||||
Sbjct 563 AAATGGATCAGCTTGTCCCGGGAC-A-ATGCCCTCTTCAACACCACCCTCTCAGACCCAA 620
Query 809 ACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAGTTGGTGAGCAATGTT 868
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 621 ACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGTGGAAAGTTGGTGACCAATGTT 680
Query 869 GTTGTTGGAGTGACAACTGACAAAAAGTAATCAAGAATGAGTGAGATCTTAAAGATCAAA 928
|||||||| ||||| || || ||||||||| |||||||||||||||| ||||| ||||||
Sbjct 681 GTTGTTGGTGTGACCACCGATAAAAAGTAACCAAGAATGAGTGAGATTTTAAATATCAAA 740
Query 929 TCCAAATTCTTCCTCTATTCCTGCGTTTGGTTTGTGCATATTACATACGCGGAAAAACTG 988
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCCAAATTCTTCATCTATTCCTGCGTTTGGTTTGTGCATATTACATACGCGGAAAAACTG 800
Query 989 TATGTT-ATATATCTCTTGACTCCTTTTTAACCCAAGAGAAAAAGCTTATCAGAATCTCT 1047
|||||| |||||||||||||||||||||||||| |||| |||| ||| ||||||||||||
Sbjct 801 TATGTTTATATATCTCTTGACTCCTTTTTAACCTAAGA-AAAAGGCTGATCAGAATCTCT 859
Query 1048 TGTTACTGCATTATTGGGGTTTATTCAAAGTTGAAGACACAA-GGTTTTTGCTCGAATAA 1106
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 860 TGTTACTGCAATATTGGGGTTTATTCAAAGTTGAAGACACAAAGGTTTTTGCTCTAAGAA 919
Query 1107 T-TTGGCATTCTTTTGCTCCATGGAACTTGACCTTCTCTTCTGTTTGTTGACTTCTAAAA 1165
| ||| |||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 920 TCTTG-CATTCTTTTGCTCCATGGAACTTGACCTTCTCTTCTGTTTGTAGAGTTGTAAAA 978
Query 1166 CTCCATCGGCC 1176
|||||| ||||
Sbjct 979 CTCCATTGGCC 989
Score = 538 bits (291), Expect = 4e-152
Identities = 338/359 (94%), Gaps = 9/359 (3%)
Strand=Plus/Plus
Query 138 TGCATATCATCGCTCTAGCTTTCGCGGGTTTTGGATTCGATTCCTTACCCTTCTCCAATC 197
|||||||||||||||||| |||||| ||||||||||||||||||| ||| ||| |||||
Sbjct 33 TGCATATCATCGCTCTAGATTTCGCTGGTTTTGGATTCGATTCCTCCCCCATCTTCAATC 92
Query 198 GAAGTTTTTGGCTTTGAATTGGATTTGGGTTTC-GTTCCAAAATCAGCTC-TTTTTGTTA 255
||||| |||||||||||||||||||| ||| ||| |||||||||||| ||||||||
Sbjct 93 ---GTTTTCGGCTTTGAATTGGATTTGGG-TTCGGTT-CAAAATCAGCTCTTTTTTGTT- 146
Query 256 ATCAGCAGATATGCAGGACCAGCTGGTGTGTCATGGTTGTAGGAATTTATTGATGTATCC 315
| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 147 -TTATCAGATATGCAGGACCAGCTCGTGTGTCATGGTTGTAGGAATTTATTGATGTATCC 205
Query 316 TAGAGGAGCATCTAATGTGCGTTGTGCGTTATGTAACACTATCAACATGGTTCCTCCTCC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TAGAGGAGCATCTAATGTGCGTTGTGCGTTATGTAACACTATCAACATGGTTCCTCCTCC 265
Query 376 TCCTCCACCTCACGACATGGCACACATTATATGTGGTGGTTGTAGAACAATGCTTATGTA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TCCTCCACCTCACGACATGGCACACATTATATGTGGTGGTTGTAGAACAATGCTTATGTA 325
Query 436 TACGCGTGGGGCTAGTAGCGTAAGATGCTCTTGCTGTCAAACTACGAACCTTGTGCCAG 494
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 326 TACGCGTGGGGCAAGTAGCGTAAGATGCTCTTGCTGTCAGACTACGAACCTTGTGCCAG 384
> Ahg891336 jgi|Araly1|891336|Al_scaffold_0007_3322
Length=225
Score = 296 bits (160), Expect = 2e-79
Identities = 205/225 (91%), Gaps = 9/225 (4%)
Strand=Plus/Plus
Query 683 GCTGTTTGTCAATTCGTAACTAACGTTAATATGAGCAATGGAAGGGTACCTCTCCCAACT 742
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 GCTGTTTGTCAGTTCGTAACTAACGTTAATATGAGCAATGGAAGGGTGCCTCTCCCAACT 60
Query 743 AACCGGCCAAATGGAACAGCTTGT-CC----C----CCCTCTACATCAACTTCAACACCA 793
||||||||||||||| |||||||| || | |||||||| |||||||||||||||
Sbjct 61 AACCGGCCAAATGGATCAGCTTGTCCCGGGACAATGCCCTCTACTTCAACTTCAACACCA 120
Query 794 CCCTCTCAGACCCAAACCGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGCGGAAAG 853
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CCCTCTCAGACCCAAACTGTTGTTGTAGAAAACCCCATGTCCGTTGATGAAAGTGGAAAG 180
Query 854 TTGGTGAGCAATGTTGTTGTTGGAGTGACAACTGACAAAAAGTAA 898
||||||| ||||||||||||||| ||||| || || |||||||||
Sbjct 181 TTGGTGACCAATGTTGTTGTTGGTGTGACCACCGATAAAAAGTAA 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46624327491
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5