BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20390.1
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492822 jgi|Araly1|492822|fgenesh2_kg.7__2255__AT4G20390.1 1038 0.0
Ahg915751 jgi|Araly1|915751|Al_scaffold_0008_502 390 7e-108
> Ahg492822 jgi|Araly1|492822|fgenesh2_kg.7__2255__AT4G20390.1
Length=766
Score = 1038 bits (562), Expect = 0.0
Identities = 723/796 (91%), Gaps = 30/796 (4%)
Strand=Plus/Plus
Query 1 ATCACTTTCTCTTGATCACTCACTGCATCAACAATGGCCAGAGAGAAGATTGTGGTGGCT 60
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 ATCACTTTCTCTTGATCACTCATTTCATCAACAATGGCCAGAGAGAAGATTGTGGTGGCT 60
Query 61 GGTGGTACCACAAAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCATGGCT 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTGGTAGCACAAAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCATGGCT 120
Query 121 ACTTTAGCTGCAGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTTAGCTGCAGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCC 180
Query 181 ACCATTGGTACTGTTCCTATTAAAGCCACTTTAACCGCTAAGTTTCAGCACACACCGGCT 240
|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 181 ACCATTGGTACTCTTCCTATCAAAGCCACTTTAACCGCTAAGTTTCAGGACACACCGGCC 240
Query 241 TTTGTGTTCTTTGTTATAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTGTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTGTGTTCTTTGTTATAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTGTT 300
Query 301 GTTCAGATTTTCAGCCGGAAACTGGAGTACAAAGGTCTTCGTCTCCTCTCTATCGCCATT 360
|||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 301 CTTCAGATTTTTAGCCGGAAACTGGAGTACAAAGGTGTCCGTCTCCTCTCTATCGCCATT 360
Query 361 CTTGACATGCTAAACGCAACACTAGTATCTGCGGCTGCAAACGCGGCGGTGTTCGTGGCA 420
|| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 361 CTAGACATGCTAAACGCAACTCTAGTATCTGCTGCTGCAAACGCGGCGGTATTCGTGGCG 420
Query 421 GAGCTAGGGAAGAACGGAAACAAGCACGCCAAGTGGAACAAAGTCTGCGACAGGTTCACC 480
||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 GAGTTGGGGAAGAATGGAAACAAGCACGCCAAGTGGAACAAAGTCTGCGACAGGTTTGCC 480
Query 481 ACTTACTGTGATCACGGCGCAGGAGCAATCATCGCAGCATTCGCCGGAGTCATTCTAATG 540
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 481 ACTTACTGTGATCACGGCGCTGGAGCACTCATCGCCGCATTCGCCGGAGTCATTCTAATG 540
Query 541 CTCCTCGTGTCCGCCGTCTCTATTTCCCGCCTCTTAATCAATTCTAAAAACTTCTCCACC 600
|||||||| ||| ||||||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 541 CTCCTCGTCTCCTCCGTCTCCATTTCCCGCCTCTTAATCAATTCTAAACACTTATCCACC 600
Query 601 ACCGCCACCACAACCTCCGTCGTCTAAAACATCGTGGCCAAAAATTCAGCAACATGTGTG 660
||||||||||||||| |||||||||||||||||| ||||||||| | | || |||
Sbjct 601 ACCGCCACCACAACCGCCGTCGTCTAAAACATCGCGGCCAAAAA----G-A---TG-GTG 651
Query 661 TGACCATTTTATAGATGTTGTGGCTTACTTTGTGTGTTTGTCTCTCAAGTCACTAGCAAA 720
|| | || | | ||||| | || ||| |||||||||||||| || |
Sbjct 652 TGGC--TT--AC---T-TTGTG--T------GT-TGT----CTCTCAAGTCACTATCAGA 690
Query 721 TTGTGTAATGCACTCCTTTGTTCTATCACTTTCACATTTGTATTCAAGTTTTCATTTCTC 780
|||| ||||||||||| ||||||||||||||||||||||||| | |||||| |||||||
Sbjct 691 TTGTCTAATGCACTCCCCTGTTCTATCACTTTCACATTTGTATACGAGTTTTAATTTCTC 750
Query 781 TCTTATCTTTTTATAT 796
|||| |||||||||||
Sbjct 751 TCTTTTCTTTTTATAT 766
> Ahg915751 jgi|Araly1|915751|Al_scaffold_0008_502
Length=588
Score = 390 bits (211), Expect = 7e-108
Identities = 450/563 (80%), Gaps = 25/563 (4%)
Strand=Plus/Plus
Query 73 AAGAGCTGGAAACTACTCTTGGGGCTGAGAATATTTGCATTCAT-GGCTACTTTAGCTGC 131
|||||||| ||| ||||||| ||||||||| || |||| ||| | || || ||| ||||
Sbjct 34 AAGAGCTGCAAAATACTCTTAGGGCTGAGATTACTTGCCTTC-TCAGCCACGTTATCTGC 92
Query 132 AGCCATTGTAATGTCACTAAACAAAGAGACAAAGACCTTGGTTGTGGCCACCA-TTGGTA 190
||||||||||||| | | |||||||||||| |||| || ||||||| | | |||| |
Sbjct 93 AGCCATTGTAATGGGATTGAACAAAGAGACAGAGACTTTTGTTGTGG-GAAAAGTTGGAA 151
Query 191 CTGTTCCTATTAAAGCCACTTTAACCGCTAAGTTTC-AGCACACACCGGCTTTTGTGTTC 249
| ||| |||||||| ||||| || |||||| ||| | |||||||| |||||||||||
Sbjct 152 ATACTCCAATTAAAGCTACTTTCACTGCTAAG-TTCGACCACACACCAGCTTTTGTGTT- 209
Query 250 TTT-GTTA-TAGCTAATGTAATGGTGAGCTTCCACAACTTGTTGATGATTG-TGGTTCAG 306
||| | || | ||||||| |||||||||||||||||||||||||||||||| | |||||
Sbjct 210 TTTCG-TAGTGGCTAATGCAATGGTGAGCTTCCACAACTTGTTGATGATTGCTC-TTCAG 267
Query 307 AT-TTTC-AGCCGGAAACTGGAGTACAAAGGTCTTCGTCTCCTCTCTATCGCCATTCTTG 364
|| ||| || ||||| |||||| || ||| ||||||| |||||| ||||||||||||
Sbjct 268 ATATTTGGAG--GGAAAATGGAGTTCACTGGTTTTCGTCTTCTCTCTGTCGCCATTCTTG 325
Query 365 ACATGCTAAACGCAACACTAGTATCTGCGGCTGCAAACGCGGCGGTGTTCGTGGCAGAGC 424
|||||||||| | || ||| | || ||||| ||||||||||||| |||| |||| |||
Sbjct 326 ACATGCTAAATGTGACTCTAATTTCGGCGGCAGCAAACGCGGCGGCGTTCATGGCTGAGG 385
Query 425 TAGGGAAGAACGGAAACAAGCACGCCA-AGTGGAACAAAGTCTGCGACAGGTTCACCACT 483
|||| |||||||| ||||| ||||| | | ||| ||||| |||| ||||| ||| |||||
Sbjct 386 TAGGAAAGAACGGGAACAAACACGCGAGA-TGGGACAAAATCTGTGACAGATTCGCCACT 444
Query 484 TACTGTGATCACGGCGCAGGAGCAATCATCGCAGCATTCGCCGGAGTCATTCTAATGCTC 543
||||||||||||||||| |||||| | ||||| || |||||||| || || || ||||||
Sbjct 445 TACTGTGATCACGGCGCCGGAGCATTAATCGCCGCCTTCGCCGGCGTAATCCTTATGCTC 504
Query 544 CTCGTGTCCGCCGTC-TCTATTTCCCGCCTCTTA-ATCAATTCTAAAAACTTCTCCACCA 601
|| | ||||||| | || || || || ||| | | ||| |||| || ||||||||
Sbjct 505 ATCATCTCCGCCG-CGTCAATCTCTCGTCTCGTCCAGCAAAA-TAAATGCTGCTCCACCA 562
Query 602 CCGCCACCACAACCTCCGTCGTC 624
|||| | | | |||||||||||
Sbjct 563 CCGC-ATCTC--CCTCCGTCGTC 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30460210683
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5