BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20410.1 Length=1202 Score E Sequences producing significant alignments: (Bits) Value Ahg890125 jgi|Araly1|890125|Al_scaffold_0007_2111 1474 0.0 > Ahg890125 jgi|Araly1|890125|Al_scaffold_0007_2111 Length=876 Score = 1474 bits (798), Expect = 0.0 Identities = 850/876 (97%), Gaps = 0/876 (0%) Strand=Plus/Plus Query 123 ATGTCTTCGGATCCTGACAAAATGATGTCCAAAGCCGACAAAATGACAAAGCTCACGCTT 182 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTTCGGATCCTGAGAAAATGATGTCCAAAGCCGACAAAATGACAAAGCTCACGCTT 60 Query 183 ACTAGATGGAGTGCTGATTGGAGAGGTGCTACTGAGTTGTATGAGCAAGCAGCAAATGGG 242 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 ACTAGATGGAGTGCTGATTGGAGAGGTGCTACTGAGTTGTATGAGCAAGCAGCCAATGGG 120 Query 243 TTTAGAGCATCAAACAAATATGAGAAAGCTAAAGTGGCTCTCGAGAAAGCTTCAAAAGGA 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTTAGAGCATCAAACAAATATGAGAAAGCTAAAGTGGCTCTCGAGAAAGCTTCAAAAGGA 180 Query 303 CAAGAGATGCAAGCTTCTCCTTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCCTTA 362 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 181 CAAGAGATGCAAGCTTCTCCCTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTTTA 240 Query 363 GCACAGAAGCTAAGTATTTGGAATGAAGTTGCTGATTTTTATAGAAAGGCGTCGGAGCTG 422 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 GCACAGAAACTAAGTATTTGGAATGAAGTTGCTGATTTTTATAGAAAGGCGTCTGAGCTG 300 Query 423 TATGTTGAGTGTGGAAGGGCACAACCCGCATCAGATGCTCTTGGAAAGGCTGCCCGTGCT 482 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 301 TATGTTGAGTGTGGAAGGGCACAACCCGCATCAGATGCTCTTGGAAAAGCTGCTCGTGCT 360 Query 483 TTGGAAGATGTCAAACCAGATGACGCCATCCAACTATACACTGATGCTTGTGAAATTCTT 542 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 TTGGAAGATGTCAAACCAGATGACGCCATCCAACTATACACTGATGCATGTGAAATTCTT 420 Query 543 GAAGAGGATGGGAGGGACCAAATGGCCTTTGATCTGTACCGTGCTTGTGCTAATGTCTAC 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GAAGAGGATGGGAGGGACCAAATGGCCTTTGATCTGTACCGTGCTTGTGCTAATGTCTAC 480 Query 603 ATTAAGCTTGAGAAGTTCACAGATGCTGCAACCTTTTTCTTAAGATTGGGTGTAGCTGCT 662 || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 481 ATAAAGCTCGAGAAGTTCACAGATGCTGCAACCTTTTTCTTAAGATTGGGTGTTGCTGCT 540 Query 663 GATAAGTGTGATGCGACAAATAGCCAGTGTAAGGCCTATCTCAGTGCAATCATCTTATAT 722 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GATAAGTGCGATGCCACAAATAGCCAGTGTAAGGCCTATCTCAGTGCAATCATCTTATAT 600 Query 723 CTGTATGCTCACGACCTGCAGCAGGCAGAAAAATGCTACAATGACTGTTCTCAGATTGAT 782 ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| Sbjct 601 CTGTATGCTCATGACCTGCAACAGGCAGAAAAATGCTACAACGACTGTTCTCAGATCGAT 660 Query 783 GCCTTTCTGAAGAGTGATCAGAGCCGAAGTGCTAGTAGACTTCTCACCGCCTATAATGAA 842 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 661 GCTTTTCTGAAGAGTGATCAGAGCCGAAGTGCTAGTAGACTTCTCACAGCCTATAATGAA 720 Query 843 GGTGACATTGAAGAAATCAAGAAGGTGGCGAGTGCAAGCACTGTCTCGAATTTGGATCAT 902 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 721 GGTGACATTGAAGAAATCAAGAAGGTGGCGAGTTCAAGCACTGTCTCCAATTTGGATCAT 780 Query 903 ATGATTATCAAGTTGGCTAGGAAGCTACCCACTGGAGATGTTACTGCAATTCAGATGAAC 962 ||||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||| Sbjct 781 ATGATCATCAAGTTGGCTAGAAAGTTACCCACTGGAGATGTTACTACAATTCAGATGAAC 840 Query 963 ACTAATGACGATCTAGACGAGGATGATCTCACTTAA 998 |||||||||||||||||||||||||||||||||||| Sbjct 841 ACTAATGACGATCTAGACGAGGATGATCTCACTTAA 876 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44870673309 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5