BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20410.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890125 jgi|Araly1|890125|Al_scaffold_0007_2111 1474 0.0
> Ahg890125 jgi|Araly1|890125|Al_scaffold_0007_2111
Length=876
Score = 1474 bits (798), Expect = 0.0
Identities = 850/876 (97%), Gaps = 0/876 (0%)
Strand=Plus/Plus
Query 123 ATGTCTTCGGATCCTGACAAAATGATGTCCAAAGCCGACAAAATGACAAAGCTCACGCTT 182
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCGGATCCTGAGAAAATGATGTCCAAAGCCGACAAAATGACAAAGCTCACGCTT 60
Query 183 ACTAGATGGAGTGCTGATTGGAGAGGTGCTACTGAGTTGTATGAGCAAGCAGCAAATGGG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ACTAGATGGAGTGCTGATTGGAGAGGTGCTACTGAGTTGTATGAGCAAGCAGCCAATGGG 120
Query 243 TTTAGAGCATCAAACAAATATGAGAAAGCTAAAGTGGCTCTCGAGAAAGCTTCAAAAGGA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTAGAGCATCAAACAAATATGAGAAAGCTAAAGTGGCTCTCGAGAAAGCTTCAAAAGGA 180
Query 303 CAAGAGATGCAAGCTTCTCCTTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCCTTA 362
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 181 CAAGAGATGCAAGCTTCTCCCTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTTTA 240
Query 363 GCACAGAAGCTAAGTATTTGGAATGAAGTTGCTGATTTTTATAGAAAGGCGTCGGAGCTG 422
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GCACAGAAACTAAGTATTTGGAATGAAGTTGCTGATTTTTATAGAAAGGCGTCTGAGCTG 300
Query 423 TATGTTGAGTGTGGAAGGGCACAACCCGCATCAGATGCTCTTGGAAAGGCTGCCCGTGCT 482
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 301 TATGTTGAGTGTGGAAGGGCACAACCCGCATCAGATGCTCTTGGAAAAGCTGCTCGTGCT 360
Query 483 TTGGAAGATGTCAAACCAGATGACGCCATCCAACTATACACTGATGCTTGTGAAATTCTT 542
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TTGGAAGATGTCAAACCAGATGACGCCATCCAACTATACACTGATGCATGTGAAATTCTT 420
Query 543 GAAGAGGATGGGAGGGACCAAATGGCCTTTGATCTGTACCGTGCTTGTGCTAATGTCTAC 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGAGGATGGGAGGGACCAAATGGCCTTTGATCTGTACCGTGCTTGTGCTAATGTCTAC 480
Query 603 ATTAAGCTTGAGAAGTTCACAGATGCTGCAACCTTTTTCTTAAGATTGGGTGTAGCTGCT 662
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 ATAAAGCTCGAGAAGTTCACAGATGCTGCAACCTTTTTCTTAAGATTGGGTGTTGCTGCT 540
Query 663 GATAAGTGTGATGCGACAAATAGCCAGTGTAAGGCCTATCTCAGTGCAATCATCTTATAT 722
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATAAGTGCGATGCCACAAATAGCCAGTGTAAGGCCTATCTCAGTGCAATCATCTTATAT 600
Query 723 CTGTATGCTCACGACCTGCAGCAGGCAGAAAAATGCTACAATGACTGTTCTCAGATTGAT 782
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 601 CTGTATGCTCATGACCTGCAACAGGCAGAAAAATGCTACAACGACTGTTCTCAGATCGAT 660
Query 783 GCCTTTCTGAAGAGTGATCAGAGCCGAAGTGCTAGTAGACTTCTCACCGCCTATAATGAA 842
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GCTTTTCTGAAGAGTGATCAGAGCCGAAGTGCTAGTAGACTTCTCACAGCCTATAATGAA 720
Query 843 GGTGACATTGAAGAAATCAAGAAGGTGGCGAGTGCAAGCACTGTCTCGAATTTGGATCAT 902
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 721 GGTGACATTGAAGAAATCAAGAAGGTGGCGAGTTCAAGCACTGTCTCCAATTTGGATCAT 780
Query 903 ATGATTATCAAGTTGGCTAGGAAGCTACCCACTGGAGATGTTACTGCAATTCAGATGAAC 962
||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 781 ATGATCATCAAGTTGGCTAGAAAGTTACCCACTGGAGATGTTACTACAATTCAGATGAAC 840
Query 963 ACTAATGACGATCTAGACGAGGATGATCTCACTTAA 998
||||||||||||||||||||||||||||||||||||
Sbjct 841 ACTAATGACGATCTAGACGAGGATGATCTCACTTAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5