BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20420.1 Length=654 Score E Sequences producing significant alignments: (Bits) Value Ahg492818 jgi|Araly1|492818|fgenesh2_kg.7__2251__AT4G20420.1 854 0.0 Ahg946126 jgi|Araly1|946126|scaffold_702355.1 584 2e-166 > Ahg492818 jgi|Araly1|492818|fgenesh2_kg.7__2251__AT4G20420.1 Length=660 Score = 854 bits (462), Expect = 0.0 Identities = 600/664 (90%), Gaps = 20/664 (3%) Strand=Plus/Plus Query 7 CAAACAAACAACTTCAAAACAAAAAGAAGAACCATCTCTTGTTAA-ACACTCC---AA-A 61 ||||||||||||||||||||||||||||||| ||||||||| ||| | ||||| || | Sbjct 1 CAAACAAACAACTTCAAAACAAAAAGAAGAATCATCTCTTGCTAAGA-ACTCCAAAAACA 59 Query 62 -ATCAGCTACAATGTCAATTTCAAGAGTTTATCTCTGTCTAATCTTTCTCACATTCGTCA 120 |||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||| Sbjct 60 GATCAGCTACAATGTCAATCTCAAGAGTTTGTCTCTGCCTAATTTTTCTCACATTCGTC- 118 Query 121 G-TTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCAGCATCAGCAGCAATA 179 | ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| Sbjct 119 GCTTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCACCATCAGCCGCTATA 178 Query 180 GGGAAGAAGCATGGGAAAGAACATGTTCATTCTCCGGCAATGCTTTTTTCTGAATTCCCG 239 |||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||| ||| Sbjct 179 GGGAAGAAGCTTGGGAAAGGACATGTTCATTCTCCCGCAATGCTTGTTTCTGAATCCCCC 238 Query 240 AAGGTTGATTCATCATCCTCCATGA-CACATATTGATGAGCCTGCAACAAAGTCTGCAAT 298 ||||||||||||||||||||||||| || | |||||||||||||||||||| ||||| || Sbjct 239 AAGGTTGATTCATCATCCTCCATGACCA-AGATTGATGAGCCTGCAACAAACTCTGCCAT 297 Query 299 AGCCGGTTTTTTCAGGTATAGACTACCATTCCAGGGATGGCCTTTCCACAAGTATGCTCC 358 ||||||||||||||||||||| | |||||||| || ||||||||||||||||||||||| Sbjct 298 AGCCGGTTTTTTCAGGTATAGGTTCCCATTCCAAGGCTGGCCTTTCCACAAGTATGCTCC 357 Query 359 TTTCCCAATGGGTACACCTACGAATCCTTCCGT-TCCTGTAACTTCAACACCGTCTTCTG 417 ||| ||||||||||| ||||||||||||||| | || |||| | ||||||| ||||||| Sbjct 358 TTTTCCAATGGGTACGCCTACGAATCCTTCC-TCCCCCGTAAGTGCAACACCATCTTCTG 416 Query 418 GAGCTGCTGCTGCTGAGGAAGAGGAAACCGAGAAGGTGCCTTCTGCGCCAAGCAAAGGAA 477 || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 417 GATCTGCTGCTGCTGAGGAAGAGGAATCCGAGAAGGTGCCTTCTTCGCCAAGCAAAGGAA 476 Query 478 ACAGAGATGGAGGCAATGC---GT-AATG-AATC-A-ATATGTTTTCTACTAGAACCTTA 530 |||||||||||||||| || || |||| || | | | |||||||||| ||||||||| Sbjct 477 ACAGAGATGGAGGCAACGCGTAGTGAATGAAAACAAGAAATGTTTTCTAGTAGAACCTTG 536 Query 531 TTGTGTTTTAATGACTGTGGAATCTTTCCTCTAGTTTTACATATTGTATCAAATAAAATG 590 ||||||||||||| |||| || | |||||||||||||||||||||||||||||||||||| Sbjct 537 TTGTGTTTTAATGGCTGTTGATTATTTCCTCTAGTTTTACATATTGTATCAAATAAAATG 596 Query 591 TACCATGTATTATAAATGCTATGTGACATTTACATGGAAAAATGAAATGAATACAGTTTC 650 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 597 TACCATGTATTATAAATGCTATGTGACATTTACATGGAAAAATGAAATGAATACAATTTA 656 Query 651 TCTT 654 |||| Sbjct 657 TCTT 660 > Ahg946126 jgi|Araly1|946126|scaffold_702355.1 Length=469 Score = 584 bits (316), Expect = 2e-166 Identities = 410/454 (90%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 58 CAAAATCAGCTACAATGTCAATTTCAAGAGTTTATCTCTGTC-TAATCTTTCTCACATTC 116 |||| ||||||||||||||||| |||||||||| |||||| | |||||||||||||| || Sbjct 7 CAAATTCAGCTACAATGTCAATCTCAAGAGTTTGTCTCTG-CTTAATCTTTCTCACAATC 65 Query 117 GTCAG-TTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCAGCATCAGCAG- 174 ||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||| | Sbjct 66 GTC-GCTTCCCCACTTGTGATCTGCTCTCGCAGCCCGAAACTCGCAGCACCATCAGCTGT 124 Query 175 CAATAGGGAAGAAGCATGGGAAAGAACATGTTCATTCTCCGGCAATGCTTTTTTCTGAAT 234 | ||||||||||||| |||||||| ||||||||||||||| ||||||||| |||||||| Sbjct 125 C-ATAGGGAAGAAGCTTGGGAAAGGACATGTTCATTCTCCCGCAATGCTTGTTTCTGAA- 182 Query 235 TC-CCGAAGGTTGATTCATCATCCTCCATGA-CACATATTGATGAGCCTGCAACAAAGTC 292 || || ||||||||||||||||||||||||| || | |||||||||||||||||||| || Sbjct 183 TCACCCAAGGTTGATTCATCATCCTCCATGATCA-AGATTGATGAGCCTGCAACAAACTC 241 Query 293 TGCAATAGCCGGTTTTTTCAGGTATAGACTACCATTCCAGGGATGGCCTTTCCACAAGTA 352 ||| ||||||||||||||||||||||| | |||||||| || ||||||||||||||||| Sbjct 242 TGCCATAGCCGGTTTTTTCAGGTATAGGTTCCCATTCCAAGGCTGGCCTTTCCACAAGTA 301 Query 353 TGCTCCTTTCCCAATGGGTACACCTACGAATCCTTCCGT-TCCTGTAACTTCAACACCGT 411 ||||||||| ||||||||||| ||||||||||||||| | || |||| | ||||||| | Sbjct 302 TGCTCCTTTTCCAATGGGTACGCCTACGAATCCTTCC-TCCCCCGTAAGTGCAACACCAT 360 Query 412 CTTCTGGAGCTGCTGCTGCTGAGGAAGAGGAAACCGAGAAGGTGCCTTCTGCGCCAAGCA 471 |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 361 CTTCTGGATCTGCTGCTGCTGAGGAAGAGGAATCCGAGAAGGTGCCTTCTTCGCCAAGCA 420 Query 472 AAGGAAACAGAGATGGAGGCAATGCGTAATGAAT 505 |||||||||||||||||||||| ||||| ||||| Sbjct 421 AAGGAAACAGAGATGGAGGCAACGCGTAGTGAAT 454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23979314793 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5