BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20420.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492818 jgi|Araly1|492818|fgenesh2_kg.7__2251__AT4G20420.1 854 0.0
Ahg946126 jgi|Araly1|946126|scaffold_702355.1 584 2e-166
> Ahg492818 jgi|Araly1|492818|fgenesh2_kg.7__2251__AT4G20420.1
Length=660
Score = 854 bits (462), Expect = 0.0
Identities = 600/664 (90%), Gaps = 20/664 (3%)
Strand=Plus/Plus
Query 7 CAAACAAACAACTTCAAAACAAAAAGAAGAACCATCTCTTGTTAA-ACACTCC---AA-A 61
||||||||||||||||||||||||||||||| ||||||||| ||| | ||||| || |
Sbjct 1 CAAACAAACAACTTCAAAACAAAAAGAAGAATCATCTCTTGCTAAGA-ACTCCAAAAACA 59
Query 62 -ATCAGCTACAATGTCAATTTCAAGAGTTTATCTCTGTCTAATCTTTCTCACATTCGTCA 120
|||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||
Sbjct 60 GATCAGCTACAATGTCAATCTCAAGAGTTTGTCTCTGCCTAATTTTTCTCACATTCGTC- 118
Query 121 G-TTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCAGCATCAGCAGCAATA 179
| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 119 GCTTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCACCATCAGCCGCTATA 178
Query 180 GGGAAGAAGCATGGGAAAGAACATGTTCATTCTCCGGCAATGCTTTTTTCTGAATTCCCG 239
|||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||| |||
Sbjct 179 GGGAAGAAGCTTGGGAAAGGACATGTTCATTCTCCCGCAATGCTTGTTTCTGAATCCCCC 238
Query 240 AAGGTTGATTCATCATCCTCCATGA-CACATATTGATGAGCCTGCAACAAAGTCTGCAAT 298
||||||||||||||||||||||||| || | |||||||||||||||||||| ||||| ||
Sbjct 239 AAGGTTGATTCATCATCCTCCATGACCA-AGATTGATGAGCCTGCAACAAACTCTGCCAT 297
Query 299 AGCCGGTTTTTTCAGGTATAGACTACCATTCCAGGGATGGCCTTTCCACAAGTATGCTCC 358
||||||||||||||||||||| | |||||||| || |||||||||||||||||||||||
Sbjct 298 AGCCGGTTTTTTCAGGTATAGGTTCCCATTCCAAGGCTGGCCTTTCCACAAGTATGCTCC 357
Query 359 TTTCCCAATGGGTACACCTACGAATCCTTCCGT-TCCTGTAACTTCAACACCGTCTTCTG 417
||| ||||||||||| ||||||||||||||| | || |||| | ||||||| |||||||
Sbjct 358 TTTTCCAATGGGTACGCCTACGAATCCTTCC-TCCCCCGTAAGTGCAACACCATCTTCTG 416
Query 418 GAGCTGCTGCTGCTGAGGAAGAGGAAACCGAGAAGGTGCCTTCTGCGCCAAGCAAAGGAA 477
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 417 GATCTGCTGCTGCTGAGGAAGAGGAATCCGAGAAGGTGCCTTCTTCGCCAAGCAAAGGAA 476
Query 478 ACAGAGATGGAGGCAATGC---GT-AATG-AATC-A-ATATGTTTTCTACTAGAACCTTA 530
|||||||||||||||| || || |||| || | | | |||||||||| |||||||||
Sbjct 477 ACAGAGATGGAGGCAACGCGTAGTGAATGAAAACAAGAAATGTTTTCTAGTAGAACCTTG 536
Query 531 TTGTGTTTTAATGACTGTGGAATCTTTCCTCTAGTTTTACATATTGTATCAAATAAAATG 590
||||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 537 TTGTGTTTTAATGGCTGTTGATTATTTCCTCTAGTTTTACATATTGTATCAAATAAAATG 596
Query 591 TACCATGTATTATAAATGCTATGTGACATTTACATGGAAAAATGAAATGAATACAGTTTC 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 597 TACCATGTATTATAAATGCTATGTGACATTTACATGGAAAAATGAAATGAATACAATTTA 656
Query 651 TCTT 654
||||
Sbjct 657 TCTT 660
> Ahg946126 jgi|Araly1|946126|scaffold_702355.1
Length=469
Score = 584 bits (316), Expect = 2e-166
Identities = 410/454 (90%), Gaps = 12/454 (3%)
Strand=Plus/Plus
Query 58 CAAAATCAGCTACAATGTCAATTTCAAGAGTTTATCTCTGTC-TAATCTTTCTCACATTC 116
|||| ||||||||||||||||| |||||||||| |||||| | |||||||||||||| ||
Sbjct 7 CAAATTCAGCTACAATGTCAATCTCAAGAGTTTGTCTCTG-CTTAATCTTTCTCACAATC 65
Query 117 GTCAG-TTCCCCACTTGTGCTCTGCTCTCGCAGCCCGAAACTCGCAGCAGCATCAGCAG- 174
||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 66 GTC-GCTTCCCCACTTGTGATCTGCTCTCGCAGCCCGAAACTCGCAGCACCATCAGCTGT 124
Query 175 CAATAGGGAAGAAGCATGGGAAAGAACATGTTCATTCTCCGGCAATGCTTTTTTCTGAAT 234
| ||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||
Sbjct 125 C-ATAGGGAAGAAGCTTGGGAAAGGACATGTTCATTCTCCCGCAATGCTTGTTTCTGAA- 182
Query 235 TC-CCGAAGGTTGATTCATCATCCTCCATGA-CACATATTGATGAGCCTGCAACAAAGTC 292
|| || ||||||||||||||||||||||||| || | |||||||||||||||||||| ||
Sbjct 183 TCACCCAAGGTTGATTCATCATCCTCCATGATCA-AGATTGATGAGCCTGCAACAAACTC 241
Query 293 TGCAATAGCCGGTTTTTTCAGGTATAGACTACCATTCCAGGGATGGCCTTTCCACAAGTA 352
||| ||||||||||||||||||||||| | |||||||| || |||||||||||||||||
Sbjct 242 TGCCATAGCCGGTTTTTTCAGGTATAGGTTCCCATTCCAAGGCTGGCCTTTCCACAAGTA 301
Query 353 TGCTCCTTTCCCAATGGGTACACCTACGAATCCTTCCGT-TCCTGTAACTTCAACACCGT 411
||||||||| ||||||||||| ||||||||||||||| | || |||| | ||||||| |
Sbjct 302 TGCTCCTTTTCCAATGGGTACGCCTACGAATCCTTCC-TCCCCCGTAAGTGCAACACCAT 360
Query 412 CTTCTGGAGCTGCTGCTGCTGAGGAAGAGGAAACCGAGAAGGTGCCTTCTGCGCCAAGCA 471
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 361 CTTCTGGATCTGCTGCTGCTGAGGAAGAGGAATCCGAGAAGGTGCCTTCTTCGCCAAGCA 420
Query 472 AAGGAAACAGAGATGGAGGCAATGCGTAATGAAT 505
|||||||||||||||||||||| ||||| |||||
Sbjct 421 AAGGAAACAGAGATGGAGGCAACGCGTAGTGAAT 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5