BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20430.1
Length=2746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354710 jgi|Araly1|354710|fgenesh1_pg.C_scaffold_7001883 3975 0.0
Ahg494534 jgi|Araly1|494534|fgenesh2_kg.8__350__AT5G44530.1 1862 0.0
Ahg890123 jgi|Araly1|890123|Al_scaffold_0007_2109 1847 0.0
> Ahg354710 jgi|Araly1|354710|fgenesh1_pg.C_scaffold_7001883
Length=2574
Score = 3975 bits (2152), Expect = 0.0
Identities = 2439/2579 (95%), Gaps = 13/2579 (1%)
Strand=Plus/Plus
Query 176 ATGAGGAGAGTTTTAATGGTGAATTTTGGGGTTTTACTTCTGTTCTGTTTTGGGGTTTTG 235
|||| ||||||||| |||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ATGATGAGAGTTTTGATGGTGAATTTTGGGGTTTTCCTTCTGTTCTGTTTTGGGTTTTTG 60
Query 236 TCGAATTCATTTGGACAAG---ATAATGGTGGTGATTCTGATATAAACTCTACTACGGCT 292
||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 61 TCGAACTCCTTTGGACAAGATAATAATGCTGGTGATTCTGATATAAACTCTACTACGGCT 120
Query 293 GTTTACATTGTTACCCTGAGACAAGCTTCTTCTCTTCACCTTTTCCAACAAGAAGCAGAA 352
|||||||||||||| |||||||||||| |||||||||| |||||||| |||||| |||||
Sbjct 121 GTTTACATTGTTACTCTGAGACAAGCTCCTTCTCTTCATCTTTTCCAGCAAGAAACAGAA 180
Query 353 --GAAGTGAAAAGGGTCAGAGATC-AATCCAAACATGGAGACACTTCCAAGTTTACTAGA 409
||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 181 GTGAA--GAACAGGGTCAGAGA-CAAATCCAAACATGGAGACACTTCCAAGTTTACTAGA 237
Query 410 CCAAAACTCCAACCAAGGAACATTTCAAGGTCACGTTATTGGAGATCAAGAAGATCAGCA 469
|||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 238 CCAAAACTCCAACCAAGGAACATTTCAAAGTCACGTTATTGGAGATCAAGGTGACCAGCA 297
Query 470 ATTGCTCAAGCTCATGACTCTTTGCTAAGAAATGCATTGAAGGGAGAGAAGTATATAAAG 529
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 298 ATTGCTCAAGCTCATGACTCTTTGTTGAGAAATGCATTGAAGGGAGAGAAGTATATAAAG 357
Query 530 CTCTATAGCTTCCATTATCTCATCAATGGTTTTGCTGTGTTTGTTAGCTCACAACAGGCT 589
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 CTTTATAGCTTCCATTATCTCATCAATGGTTTTGCTGTCTTTGTTAGCTCACAACAGGCT 417
Query 590 GAGACTCTTTCAAGAAGAAGGGAAGTAGCAAACATAGTGTTGGATTTTTCTGTTAGGACG 649
|||| || ||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 418 GAGAAGCTGTCAAGGAGAGGGGAAGTAGCAAACATAGTGTTGGATTTTTCTGTTAGAACG 477
Query 650 GCAACAACTTATACACCTCAATTCATGGGTTTACCAAAAGGTGCATGGGTTAAAGAAGGT 709
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 478 GCAACAACTTATACACCTCAGTTCATGGGTCTACCAAAAGGTGCATGGGTTAAAGAAGGT 537
Query 710 GGATATGAAACTGCTGGAGAAGGAATTGTTATCGGGTTTATCGACACTGGCATTGATCCA 769
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 538 GGATTTGAAACTGCTGGAGAAGGAATTGTTATCGGGTTTATCGACACTGGCATTGACCCA 597
Query 770 ACTCACCCTAGTTTCAATGGCACTGACACTTCCCAGCGTCAGTATCCGATCCCTAATCAT 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ACTCACCCTAGTTTCAATGGCACTGACACTTCCCAGCGTCAGTATCCGATCCCTAATCAT 657
Query 830 TTCTCAGGTGTTTGTGAAGTTACTCCGGATTTTCCATCAGGCTCCTGTAATAGGAAGCTT 889
||||||||||||||||||||||| |||||||||||||| ||||| || | ||||||||||
Sbjct 658 TTCTCAGGTGTTTGTGAAGTTACACCGGATTTTCCATCGGGCTCGTGCAGTAGGAAGCTT 717
Query 890 GTTGGAGCTCGCCATTTCGCGCAGTCAGCTATTACTAGAGGGATTTTCAATTCATCTGAA 949
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 718 GTTGGAGCCCGCCATTTCGCGCAGTCAGCTATTACTAGAGGCATTTTCAATTCATCTGAG 777
Query 950 GACTATGCTTCACCTTTTGACGGCGATGGCCATGGCACGCACACAGCTTCCATCGCAGCG 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GACTATGCTTCACCTTTTGACGGCGATGGCCATGGCACGCACACAGCTTCCATCGCAGCG 837
Query 1010 GGTAACCATGGTGTCTCAGCAGTAGTTTCTGGCCATAACTTTGGAAGTGCTAGTGGAATC 1069
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 838 GGTAACCATGGGGTCTCAGCAGTAGTTTCTGGTCATAACTTTGGAAGTGCTAGTGGAATC 897
Query 1070 GCTCCTCGTGCGCATATTTCTGTTTACAAGGCATTGTATAAGAGTTTTGGGGGATTTGCT 1129
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 GCTCCTCGTGCACATATTTCTGTTTACAAGGCATTATATAAGAGTTTTGGGGGATTTGCT 957
Query 1130 GCAGATGTTGTTGCTGCTATAGACCAGGCAGCTCAAGATGGAGTTGACATATTAAGTCTA 1189
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 958 GCAGATGTTGTTGCTGCTATAGATCAGGCAGCTCAAGATGGAGTTGACATATTAAGTCTA 1017
Query 1190 TCCATCACACCTAATCGACGTCCTCCCGGTGTAGCCACGTTCTTTAACCCGTTAGATATG 1249
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1018 TCCATCACACCAAATCGACGTCCTCCTGGTGTAGCCACGTTCTTTAACCCATTAGATATG 1077
Query 1250 GCCATGCTTTCCGCTGTTAAGGCCGGTATATTCGTTGTACAAGCTGCAGGAAACACAGGT 1309
|| ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1078 GCTATGCTATCCGCTGTTAAGGCTGGTATATTCGTTGTGCAAGCTGCAGGAAACACAGGT 1137
Query 1310 CCTTCTCCTAAGAGCATGTCCTCCTTCAGTCCATGGATTTTCACTGTTGGTGCTGCTTCT 1369
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 1138 CCCTCTCCTAAGAGCATGTCCTCCTTCAGCCCATGGATTTTCACAGTTGGTGCTGCTACT 1197
Query 1370 CACGATCGAGACTACTCTAACTCGATAGTCCTAGGCAACAATGTATCTATTCCAGGCGTA 1429
|||||||||| |||||||| |||||| | ||||||||||||||||||||||||||| ||
Sbjct 1198 CACGATCGAGTTTACTCTAATTCGATAATTCTAGGCAACAATGTATCTATTCCAGGCATA 1257
Query 1430 GGACTTGCACTTCGTACAGATGAAGGCAAGAAGTACACAATGATCTCTGCTCTTGATGCG 1489
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 GGACTTGCACTTCCTACAGATGAAGGCAAGGTGTACACAATGATCTCTGCTCTTGATGCA 1317
Query 1490 TTGAAGAACAAAAGTTCAGTAGTAGACAAAGACATGTATGTAGGTGAATGCCAAGACTAT 1549
|||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTGAAGAACAAAAGTTTAGTACTCGACAAAGACATGTATGTAGGTGAATGCCAAGACTAT 1377
Query 1550 GGCAGCTTCGATAAAGATGTTATCCGTGGGAATCTACTGATATGTAGCTACTCTATCCGT 1609
| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct 1378 GACAGCTTCGATAAAGATATCATCCGTGGGAATCTTCTGATATGTAGCTACTCTATCCGT 1437
Query 1610 TTCGTCCTCGGGCTTTCCACTATTAAACAAGCTTTAGCTGTTGCCAAGAATCTATCTGCA 1669
||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1438 TTCGTGCTCGGACTTTCCACTATTAAACAAGCTTTAGCTGTTACCAAGAATCTATCTGCA 1497
Query 1670 AAGGGTGTTGTGTTCTACATGGACCCTTATGTTCTTGGTTTTCAGATTAATCCTACACCG 1729
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1498 AAGGGTGTTGTGTTCTACATGGACCCTTATGTCCTTGGTTTTCAGATTAACCCTACACCA 1557
Query 1730 ATGGACATGCCCGGGATCATAATTCCATCCGCAGAAGATTCCAAGGTTTTACTCAAGTAC 1789
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1558 ATGGACATGCCCGGCATCATAATTCCATCCTCAGAAGATTCCAAGGTTTTACTCAAGTAC 1617
Query 1790 TATAACTCTTCTCTTGTAAGAGATGGAACAACCAAGGAGATTGTTAGATTTGGAGCAGTT 1849
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1618 TATAACTCTTCTCTTGTAAGAGATGGAACCACCAAAGAGATTGTTAGATTTGGGGCAGTT 1677
Query 1850 GCAGCCATTGCAGGTGGACAAAATGCTAACTTCAGTAACAGAGCTCCTAAGATTATGTAC 1909
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1678 GCGGCCATTGCAGGTGGACAAAATGCTAACTTCAGTAACAGAGCTCCCAAGATAATGTAC 1737
Query 1910 TACTCAGCAAGAGGACCTGATCCACAAGACAGCCTTTTTAACGACGCCGACATTTTGAAA 1969
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1738 TACTCAGCAAGAGGACCTGATCCAGAAGACAGCCTCTTTAACGACGCCGACATTTTGAAA 1797
Query 1970 CCAAATCTTGTAGCTCCTGGAAATTCCATTTGGGGCGCTTGGAGTTCCGCTGCCACTGAA 2029
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1798 CCAAATCTTGTAGCTCCTGGAAATTCCATTTGGGGTGCTTGGAGTTCCGCTGCCACTGAA 1857
Query 2030 TCCACTGAGTTTGAAGGAGAAAGTTTTGCGATGATGTCTGGTACGAGTATGGCTGCTCCT 2089
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1858 TCCACTGAGTTTGAAGGAGAGAGTTTCGCGATGATGTCTGGTACGAGTATGGCTGCTCCT 1917
Query 2090 CATGTAGCTGGTGTGGCTGCATTGGTCAAGCAGAAATTCAGAAAGTTTAGTCCTTCAGCT 2149
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1918 CATGTAGCTGGTGTGGCTGCATTGGTCAAGCAGAAATTCAGAAAATTTAGTCCTTCATCT 1977
Query 2150 ATTGCATCTGCACTTTCAACAACCTCTGTTCTATTTGACAATAAAGGCGAGGCGATAATG 2209
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1978 ATTGCATCTGCACTGTCAACAACCTCTGTTCTTTTTGACAATAAAGGTGAGGCGATAATG 2037
Query 2210 GCTCAACGTGCTTATGCTAATCCTGATCAAACCATATCTCCTGCTACCCCATTTGATATG 2269
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2038 GCTCAACGTGCTTATGCTAATCCTGATCAAACCCTATCTCCTGCAACCCCATTTGATATG 2097
Query 2270 GGGAATGGCTTTGTGAATGCAACCGCAGCTTTGGATCCTGGCCTAATCTTTGATACTAGT 2329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 GGGAATGGCTTTGTGAATGCAACCGCAGCTTTGGATCCTGGCCTAATCTTTGATACTAGT 2157
Query 2330 TTTGAAGACTATATGTCATTTCTTTGTGGCATCAATGGATCAGCTCCAGTGGTATTCAAC 2389
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2158 TTTGAAGACTATATGTCATTTCTTTGTGGAATCAATGGATCAGCTCCAGTGGTTTTCAAC 2217
Query 2390 TACACCGGCACAAATTGCTTGCGGAACAATGCAACAATCAGCGGATCTGACCTTAATTTG 2449
|||||||||| |||||| |||| | ||||||||||||||||||| ||||||| ||||||
Sbjct 2218 TACACCGGCAAAAATTGTTTGCTTAGCAATGCAACAATCAGCGGAGCTGACCTCAATTTG 2277
Query 2450 CCATCCATCACTGTATCGAAGCTTAACAACACTCGAACGGTCCAAAGACTAATGACAAAC 2509
|||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 2278 CCATCCATCACTGTCGCGAGGCTTAACAACACTCGAACTATCCAAAGACTAATGACAAAC 2337
Query 2510 ATTGCTGGAAATGAGACCTATACTGTCAGTTTGATTACTCCTTTTGATGTTTTGAT-AAA 2568
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||
Sbjct 2338 ATTGCTGGAAATGAGACCTATACTGTCAGTTTGATTCCTCCTTTTGATGTTTTGGTGAAA 2397
Query 2569 TGTATCTCCTACTCAATTCTCTATAGCCAGTGGAGAGACAAAGCTACTTAGTGTAATCCT 2628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 -GTATCTCCTACTCAATTCTCTATAGCCAGTGGAGAGACAAAGCTACTTAGTGTAATCCT 2456
Query 2629 CACAGCAAAGAGGAACAGCTCTATTTCTAGTTTTGG-AGGGATCAAGCTGCTAGGAAACG 2687
||||||||||| ||||||||||||| |||||||||| || | ||||||| | |||| ||
Sbjct 2457 CACAGCAAAGAAGAACAGCTCTATTGCTAGTTTTGGGAGAG-TCAAGCTTTTTGGAACCG 2515
Query 2688 CGGGACACATTGTTCGTATTCCGGTGTCTGTCACAGTGAAAATCGCCTCGAAACAATGA 2746
| ||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2516 CAGGACATGTTGTTCATATTCCGATGTCTGTCACAGTGAAAATCGCCTCGAACCAATGA 2574
> Ahg494534 jgi|Araly1|494534|fgenesh2_kg.8__350__AT5G44530.1
Length=2867
Score = 1862 bits (1008), Expect = 0.0
Identities = 1941/2381 (82%), Gaps = 105/2381 (4%)
Strand=Plus/Plus
Query 409 ACCAAAACTCCAACCAAGGAACATTTCAAGGTCACGTTATTGG-AGATCAAGAAGAT--C 465
||||||| | |||||||||||| ||||||| |||| || || || || | ||||| |
Sbjct 435 ACCAAAATTGAAACCAAGGAACAATTCAAGGAAACGTCATGGGAAG-TC-A-AAGATACC 491
Query 466 AGCAATTGCTCAAGCTCATGACTCTTTGC-TAAGAAATG-CATTGAAGGGAGAGAAGTAT 523
| | |||||||| ||||||||||||| | | ||||| | |||| || ||||||||||||
Sbjct 492 ATCTGTTGCTCAATCTCATGACTCTTT-CTTGAGAAA-GACATTAAAAGGAGAGAAGTAT 549
Query 524 ATAAAGCTCTATAGCTT-CCATTATCTCATCAATGGTTTTGCTGTGTTTGTTAGCTCACA 582
|||||||| ||||| || ||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 550 ATAAAGCTTTATAG-TTACCATTATCTAATCAATGGATTTGCTCTGTTTGTTAGCTCACA 608
Query 583 ACAGGCTGAGACTCTTTCAA-GAAGAAGGGAAGTAGCAAACATAGTGTTGGATTTTTCTG 641
||||||||||| || |||| | ||||| ||||||||||||||||||||||||| ||||
Sbjct 609 ACAGGCTGAGAAGCTGTCAATG-AGAAGAGAAGTAGCAAACATAGTGTTGGATTACTCTG 667
Query 642 TTAGGACGGCAACAACTTATACACCTCAATTCATGGGTTTACCAAAAGGTGCATGGGTTA 701
||||||| |||||||||||||| || || || |||||||||||| |||| |||||||| |
Sbjct 668 TTAGGACAGCAACAACTTATACCCCACAGTTTATGGGTTTACCACAAGGAGCATGGGTCA 727
Query 702 AAGAAGGTGGATATGAAACTGCTGGAGAAGGAATTGTTATCGGGTTTATCGACACTGGCA 761
|||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 728 AAGAAGGTGGATATGAGATTGCTGGAGAAGGAATTGTTATCGGGTTTATCGATACTGGGA 787
Query 762 TTGATCC-AACTCACCCTAGTTTCAATGGCACTGACACTTCCCAGCG-TCAGTATCCGAT 819
| ||||| || ||| ||||||||||||| || || || || |||| ||| ||||| ||
Sbjct 788 TCGATCCGAA-TCATCCTAGTTTCAATGACAATG--AC-TCTAAGCGTTCA-TATCCAAT 842
Query 820 CCCTAATCATTTCTCAGGTGTTTGTGAAGTTACTCCGGATTTTCCATCAGGCTCCTGTAA 879
|||||| |||||||||||||||||||||||||| ||||||||||| ||||| || || ||
Sbjct 843 CCCTAAGCATTTCTCAGGTGTTTGTGAAGTTACACCGGATTTTCCTTCAGGATCTTGCAA 902
Query 880 TAGGAAGCTTGTTGGAGCTC-GCCATTTCGCGCAGTCAGCTATTACTAGAGGGATTTTCA 938
|| |||||| ||||||| | | ||||||||||| || ||| | || ||||| ||||| |
Sbjct 903 TAAGAAGCTAATTGGAGC-CAGACATTTCGCGCAATCCGCTGTAACCAGAGGAATTTTTA 961
Query 939 ATTCATCTGAAGACTATGCTTCACCTTTTGACGGCGATGGCCATGGCACGCACACAGCTT 998
| ||||||||||| || ||||| ||||| || || ||||| ||||| || ||||||||||
Sbjct 962 ACTCATCTGAAGAATACGCTTCTCCTTTCGATGGAGATGGACATGGAACACACACAGCTT 1021
Query 999 CCA-TCGCAGCGGGTAACCATGGTG-TCTCAGCAG-TAGTTTCTGGCCATAACTTTGGA- 1054
|| | |||||||||||||| || | || ||| | |||||||| |||||||||||||
Sbjct 1022 -CAGTTGCAGCGGGTAACCACGGAGTTC-CAG-TGATAGTTTCTAACCATAACTTTGGAT 1078
Query 1055 AGTGCTAGTGGAATCGCTCCTCGTGCGCATATTTCTGTTTACAAGGCATTGTATAAGAGT 1114
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1079 A-CGCTAGTGGAATCGCTCCTCGTGCATTTATTTCTGTTTACAAGGCATTGTATAAGAGT 1137
Query 1115 TTTGGGGGATTTGCTGCAGATGTTGTTGCTGCTATAGACCAGGCAGCTCAAGATGGAGTT 1174
||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1138 TTTGGAGGTTTTGCTGCAGATGTTGTTGCAGCTATAGATCAGGCAGCTCAAGATGGAGTA 1197
Query 1175 GACATATTAAGTCTATCCATCACACCTAATCGACGTCCTCCCGGTGTAGCCACGTTCTTT 1234
|| |||||||||||||| || ||||| |||||| ||||| ||||| ||||| ||||||
Sbjct 1198 GATATATTAAGTCTATCAATTACACCGAATCGAAAACCTCCTGGTGTTGCCACTTTCTTT 1257
Query 1235 AACCCGT-TAGATATGGCCA-TGCTTTCCGCTGTTAAGGCCGGTATATTCGTTGTACAAG 1292
|| || | | ||||||| || | ||||||||||| || ||||| || || || || ||||
Sbjct 1258 AATCC-TATCGATATGG-CATTACTTTCCGCTGTAAAAGCCGGAATTTTTGTAGTCCAAG 1315
Query 1293 CTGCAGGAAACACAGGTCCTTCTCCTAAGAGCATGTCCTCCTTCAGTCCATGGATTTTCA 1352
|||| ||||| || ||||| | ||||| |||||||| || || ||||| ||||||||||
Sbjct 1316 CTGCGGGAAATACCGGTCCAGCGCCTAAAAGCATGTCTTCTTTTAGTCCTTGGATTTTCA 1375
Query 1353 CTGTTGGTGCTGCTTCTCACGATCGAGACTACTCTAACTCGATAGTCCTAGGCAACAATG 1412
| ||||||||| ||||||| ||| ||| ||||| || || || | |||| |||||||
Sbjct 1376 CAGTTGGTGCTTCTTCTCATGATAGAGTTTACTCCAATTCTTTAATTTTAGGAAACAATG 1435
Query 1413 TATCTATTCCAGGCGTAGGACTT-GCACTTCGTACAGATGAAGGCAAGAAGTACACA-AT 1470
|| |||||| |||| | ||| || ||| ||| ||| ||||| || |||| ||||| | ||
Sbjct 1436 TAACTATTCAAGGCATTGGA-TTCGCAATTCCTACGGATGATGGAAAGATGTACA-AGAT 1493
Query 1471 GATCTCTGCTCTTGATGCGTTGAAGAACAAAAGTTCAGT-AGTAGACAAAGACATGTATG 1529
|||||||||| || |||| || |||||||||| | | ||||| | ||| |||||||
Sbjct 1494 GATCTCTGCTTTTCATGCCTT---GAACAAAAGTAC-TTCTGTAGATAGAGATATGTATG 1549
Query 1530 TAGGTGAATGCCAAGACTATGGCAGCTTCGATAAAGATGTTATC-CGTGGGAATCTACTG 1588
|||||||||| ||||| |||| | || |||| ||||| || || || |||||||| |||
Sbjct 1550 TAGGTGAATGTCAAGATTATGAAAACTACGATCAAGATCTTGTCTCG-GGGAATCTTCTG 1608
Query 1589 ATATGTAGCTACTCTATC-CGTTTCGTCCTCGGGCTTTCCACTATTAAACAAGCTTTAGC 1647
||||||||||||||| | ||||| | |||||| |||| ||||| |||||||||||||
Sbjct 1609 ATATGTAGCTACTCT-GCTCGTTTTATTCTCGGGATTTCGACTATAAAACAAGCTTTAGA 1667
Query 1648 TGTTGCCAAGAATCTATCTGCAAAGGGTGTTGTGTTCTACATGGACCCTTATGTTCTTGG 1707
||||||||||||||||||||| | || || || ||||| || ||||| |||||||||||
Sbjct 1668 TGTTGCCAAGAATCTATCTGCGATTGGCGTGGTATTCTATATAGACCCGTATGTTCTTGG 1727
Query 1708 TTTTCAGATTAATCCTACACCGATGGACATGCCCGGGATCATAATTCCATCCGCAGAAGA 1767
|||| |||| ||||| ||||||||||| |||||||| |||||||||||||| | ||||||
Sbjct 1728 TTTTGAGATCAATCCAACACCGATGGATATGCCCGGAATCATAATTCCATCTGTAGAAGA 1787
Query 1768 TTCCAA-G-G-TTTTACTCAAGTACTATAACTCTTCTCTTGTAAGAGATGGAACAACCAA 1824
||| || | | |||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 1788 TTCTAAGGTGATTTTACTCAAATACTATAACTCTTCTCTTCAAAGAGATGGAACCACCAA 1847
Query 1825 GGAGATTGTTAGATTTGGAGCAGTTGCAGCCATTGCAGGTGGACAAAATGCTAACTTCAG 1884
|| |||||||| |||||||| ||||||||||||| ||| || ||||||||||||||
Sbjct 1848 AGAAATTGTTAGTTTTGGAGCGGTTGCAGCCATTGAAGGCGGTTTAAATGCTAACTTCAA 1907
Query 1885 TAACAGAGCTCCTAAGATTATGTACTACTCAGCAAGAGGACCTGATCCACAAGACAGCCT 1944
||| |||||||| ||| | ||||| ||||||||||||||||||||||| |||||| ||
Sbjct 1908 TAATAGAGCTCCCAAGGTAATGTATTACTCAGCAAGAGGACCTGATCCTGAAGACA-ACT 1966
Query 1945 -TTTTAACGACGCCGACATTTTGAAACCAAATCTTGTAGCTCCTGGAAATTCCATTTGGG 2003
|||||||||||| ||||| || ||||| || || |||||||||||||| || |||||||
Sbjct 1967 CTTTTAACGACGCAGACATATTAAAACCGAACCTCGTAGCTCCTGGAAACTCTATTTGGG 2026
Query 2004 GCGCTTGGAGTTCCGCTGCCACTGAATCCACTGAGTTTGAA-G-GAGAAAGTTTTGCGAT 2061
| ||||||||||| | | | || || || || ||||||||| | |||||| ||||||||
Sbjct 2027 GTGCTTGGAGTTCTGTTTCAACCGATTCTACCGAGTTTGAAGGTGAGAAA--TTTGCGAT 2084
Query 2062 GATGTCTGGTACGAGTATGGCTGCTCCTCATGTAGCTGGTGTGGCTGCATTGGTCAAGCA 2121
|||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 2085 GATGTCCGGTACAAGTATGGCTGCTCCTCATGTAGCTGGTGTGGCTGCATTAATCAAACA 2144
Query 2122 GAAATT-CAGA-AAGTTTAGTCCTTCAGCTA-TTGCATCTGCACTTTCAACAACCT-CTG 2177
|| || | | || |||| ||||||| | | |||||||||| ||||||||||| | | |
Sbjct 2145 -AACTTACCCACAA-TTTACTCCTTCA-CAAATTGCATCTGCGCTTTCAACAAC-TGC-G 2199
Query 2178 -TTCT-ATTTGACAATAAAGGCGAGGC-GATAATGGCTCAACGTGCTTATGCTAATCCTG 2234
|||| | | || |||||||||| | | |||||||||||| || ||||| | ||||| |
Sbjct 2200 CTTCTTAAT-GATAATAAAGGCG-GTCCGATAATGGCTCAGCGAACTTATTCCAATCCCG 2257
Query 2235 ATCAAA-CCA-TATCTCCTGCTACCCCATTTGATATGGGGAAT-GGCTTT-GTGAATGCA 2290
|||||| || ||| || || || || ||||||||||| || || ||| || ||||||
Sbjct 2258 ATCAAAGCCTCTATA-CC-GCAACACCGTTTGATATGGG-AAGCGG-TTTCGTTAATGCA 2313
Query 2291 ACCGCAGCTTTGGATCCTGGCCTAATCTTTGATACTAGTTTTGAAGACTATATGTCATTT 2350
||||||||||| || ||||| ||| | || ||||| ||||||||||| ||||||||||||
Sbjct 2314 ACCGCAGCTTTAGACCCTGGTCTAGTATTCGATACAAGTTTTGAAGATTATATGTCATTT 2373
Query 2351 CTTTGTGGCATCAATGGATCAGCTCCAGT-GGTATTCAACTACACCGGCACAAATT-GCT 2408
|||||||| ||||| || || | ||| || |||||||||||||||||| | || |||
Sbjct 2374 CTTTGTGGGATCAACGGCTCGGATCC-GTTGGTATTCAACTACACCGG-AT---TTCGCT 2428
Query 2409 -TGCGG--AACAATGCAACAATCAGCGGATCTGACCTTAATTTGCCATCCATCACTGTAT 2465
| | || || ||||||||| || | |||||| |||||||| || || || || |
Sbjct 2429 GTTCCACTAAAAACACAACAATCAATGGTTTTGACCTCAATTTGCCGTCAATTACAGTTT 2488
Query 2466 CGA-AGCTTAACAACACTCGAACGGTCCAAAGA-CTAATGACAAACATTGCTGGAAATGA 2523
| | | |||| ||| | || |||||||| | ||||| |||||| || ||||||||
Sbjct 2489 CAACA-CTTAGTGGCACGCAAATTTTCCAAAGATC-AATGAGAAACATAGCCGGAAATGA 2546
Query 2524 GACCTATACTGTCAGTTTGATTACTCCTTTTGATGTTTTGAT-AAATGTATCTCCTACTC 2582
||| || | ||| ||| || | |||||| || ||||| || ||| ||||| |||||||
Sbjct 2547 GACATACAATGTTGGTTGGAGTCCTCCTTATGGTGTTTCAATGAAA-GTATCACCTACTC 2605
Query 2583 AATTCTCTATAGCCAGTGG-AGAGACA-AAGCTACTTAGTGTAATCCTCACAGCAA-AGA 2639
|||| |||||||| | ||| ||| || ||| ||||||| |||| |||||| |||| | |
Sbjct 2606 AATTTTCTATAGCGA-TGGGAGAAACTCAAG-TACTTAGCGTAACCCTCACGGCAACAAA 2663
Query 2640 GGAACAGCTCTATTTCTAGTTTTGG-AGGGATCAAGCT-GCTAGGAAACGCGGGACACAT 2697
| ||||| || | |||||||||||| || || | | | | ||||| | ||||||||
Sbjct 2664 G-AACAGTTCCAGTTCTAGTTTTGGTAGAC-TCG-GATTGTTTGGAAATACAGGACACAT 2720
Query 2698 TGTTCGTATTCCGGTGTCTGTCACAGTGAAAATCGCCTCGA 2738
|||| |||||| || |||||| || ||||||||| ||||
Sbjct 2721 TGTTAATATTCCTGTAACTGTCATAGCGAAAATCGCTTCGA 2761
> Ahg890123 jgi|Araly1|890123|Al_scaffold_0007_2109
Length=1218
Score = 1847 bits (1000), Expect = 0.0
Identities = 1134/1199 (95%), Gaps = 8/1199 (1%)
Strand=Plus/Plus
Query 1552 CAGCTTCGATAAAGATGTTATCCGTGGGAATCTACTGATATGTAGCTACTCTATCCGTTT 1611
|||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 24 CAGCTTCGATAAAGATATCATCCGTGGGAATCTTCTGATATGTAGCTACTCTATCCGTTT 83
Query 1612 CGTCCTCGGGCTTTCCACTATTAAACAAGCTTTAGCTGTTGCCAAGAATCTATCTGCAAA 1671
||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 84 CGTGCTCGGACTTTCCACTATTAAACAAGCTTTAGCTGTTACCAAGAATCTATCTGCAAA 143
Query 1672 GGGTGTTGTGTTCTACATGGACCCTTATGTTCTTGGTTTTCAGATTAATCCTACACCGAT 1731
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 144 GGGTGTTGTGTTCTACATGGACCCTTATGTCCTTGGTTTTCAGATTAACCCTACACCAAT 203
Query 1732 GGACATGCCCGGGATCATAATTCCATCCGCAGAAGATTCCAAGGTTTTACTCAAGTACTA 1791
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 204 GGACATGCCCGGCATCATAATTCCATCCTCAGAAGATTCCAAGGTTTTACTCAAGTACTA 263
Query 1792 TAACTCTTCTCTTGTAAGAGATGGAACAACCAAGGAGATTGTTAGATTTGGAGCAGTTGC 1851
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 264 TAACTCTTCTCTTGTAAGAGATGGAACCACCAAAGAGATTGTTAGATTTGGGGCAGTTGC 323
Query 1852 AGCCATTGCAGGTGGACAAAATGCTAACTTCAGTAACAGAGCTCCTAAGATTATGTACTA 1911
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 324 GGCCATTGCAGGTGGACAAAATGCTAACTTCAGTAACAGAGCTCCCAAGATAATGTACTA 383
Query 1912 CTCAGCAAGAGGACCTGATCCACAAGACAGCCTTTTTAACGACGCCGACATTTTGAAACC 1971
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 384 CTCAGCAAGAGGACCTGATCCAGAAGACAGCCTCTTTAACGACGCCGACATTTTGAAACC 443
Query 1972 AAATCTTGTAGCTCCTGGAAATTCCATTTGGGGCGCTTGGAGTTCCGCTGCCACTGAATC 2031
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 444 AAATCTTGTAGCTCCTGGAAATTCCATTTGGGGTGCTTGGAGTTCCGCTGCCACTGAATC 503
Query 2032 CACTGAGTTTGAAGGAGAAAGTTTTGCGATGATGTCTGGTACGAGTATGGCTGCTCCTCA 2091
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 504 CACTGAGTTTGAAGGAGAGAGTTTCGCGATGATGTCTGGTACGAGTATGGCTGCTCCTCA 563
Query 2092 TGTAGCTGGTGTGGCTGCATTGGTCAAGCAGAAATTCAGAAAGTTTAGTCCTTCAGCTAT 2151
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 564 TGTAGCTGGTGTGGCTGCATTGGTCAAGCAGAAATTCAGAAAATTTAGTCCTTCATCTAT 623
Query 2152 TGCATCTGCACTTTCAACAACCTCTGTTCTATTTGACAATAAAGGCGAGGCGATAATGGC 2211
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 624 TGCATCTGCACTGTCAACAACCTCTGTTCTTTTTGACAATAAAGGTGAGGCGATAATGGC 683
Query 2212 TCAACGTGCTTATGCTAATCCTGATCAAACCATATCTCCTGCTACCCCATTTGATATGGG 2271
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 684 TCAACGTGCTTATGCTAATCCTGATCAAACCCTATCTCCTGCAACCCCATTTGATATGGG 743
Query 2272 GAATGGCTTTGTGAATGCAACCGCAGCTTTGGATCCTGGCCTAATCTTTGATACTAGTTT 2331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GAATGGCTTTGTGAATGCAACCGCAGCTTTGGATCCTGGCCTAATCTTTGATACTAGTTT 803
Query 2332 TGAAGACTATATGTCATTTCTTTGTGGCATCAATGGATCAGCTCCAGTGGTATTCAACTA 2391
||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 804 TGAAGACCATATGTCATTTCTTTGTGGGATAAATGGATCAGCTCCAGTGGTATTCAACTA 863
Query 2392 CACCGGCACA-AATTG-CTTGCGGAACAATGCAACAATCAGCGGATCTGACCTTAATTTG 2449
||| |||| | ||||| ||| | | ||||||||||||||||||||||||||| ||||||
Sbjct 864 CACTGGCA-AGAATTGTCTT-CTTAGCAATGCAACAATCAGCGGATCTGACCTCAATTTG 921
Query 2450 CCATCCATCACTGTATCGAAG-CTTAACAACACTCGAACGGTCCAAAGACTAATGACAAA 2508
|||||||||||||| || ||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 922 CCATCCATCACTGTCTC-AAGGCTTAACAACACTCGAACTGTCCAAAGACTATTGACAAA 980
Query 2509 CATTGCTGGAAATGAGACCTATACTGTCAGTTTGATTACTCCTTTTGATGTTTTGATAAA 2568
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 981 CATTGCTGGAAATGAGACCTATACTGTCAGTTTGATTCCTCCTTTTGATGTTTTGGTGAA 1040
Query 2569 TGTATCTCCTACTCAATTCTCTATAGCCAGTGGAGAGACAAAGCTACTTAGTGTAATCCT 2628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GGTATCTCCTACTCAATTCTCTATAGCCAGTGGAGAGACAAAGCTACTTAGTGTAATCCT 1100
Query 2629 CACAGCAAAGAGGAACAGCTCTATTTCTAGTTTTGG-AGGGATCAAGCTGCTAGGAAACG 2687
||||||||||| ||||||||||||| |||||||||| || | ||||||| | |||| ||
Sbjct 1101 CACAGCAAAGAAGAACAGCTCTATTGCTAGTTTTGGGAGAG-TCAAGCTTTTTGGAACCG 1159
Query 2688 CGGGACACATTGTTCGTATTCCGGTGTCTGTCACAGTGAAAATCGCCTCGAAACAATGA 2746
| ||||| |||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1160 CAGGACATGTTGTTCATATTCCGATGTCTGTCACAGTGAAAATCGCCTCGAACCAATGA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103605466400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5