BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20440.1
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492815 jgi|Araly1|492815|fgenesh2_kg.7__2248__AT4G20440.3 1742 0.0
Ahg494537 jgi|Araly1|494537|fgenesh2_kg.8__353__AT5G44500.1 582 2e-165
> Ahg492815 jgi|Araly1|492815|fgenesh2_kg.7__2248__AT4G20440.3
Length=1429
Score = 1742 bits (943), Expect = 0.0
Identities = 1052/1104 (95%), Gaps = 10/1104 (1%)
Strand=Plus/Plus
Query 94 CGAATCTCTGCTTGTAGCGAGTGTTACTATTCAATCGGCGAGAATGTCGATGTCGAAGAG 153
|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||
Sbjct 67 CGAATCTCTGCTTGTAGCGAGTGTTACTGTTTAATCGGCGAAAATGTCGATGTCGAAGAG 126
Query 154 TTCAAAGATGCTTCAGTTCATCAACTACAGGATGCGAGTGACGATCCAAGACGGAAGACA 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TTCAAAGATGCTTCAGTTCATCAACTACAGGATGCGAGTGACGATCCAAGACGGAAGACA 186
Query 214 GCTCGTTGGGAAGTTCATGGCGTTTGACCGTCACATGAACCTCGTTCTCGGCGATTGCGA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GCTCGTTGGGAAGTTCATGGCGTTTGACCGTCACATGAACCTCGTTCTCGGCGATTGCGA 246
Query 274 GGAGTTTCGTAAGCTTCCACCAGCTAAAGGGAAGAAGATCAACGAAGAGCGTGAAGATCG 333
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 247 GGAGTTTCGTAAGCTTCCACCAGCGAAAGGGAAGAAGATCAACGAAGAGCGTGAAGATCG 306
Query 334 CCGTACGCTAGGTTTAGTGTTGCTTAGAGGTGAAGAAGTTATCTCAATGACTGTCGAAGG 393
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 307 CCGTACGCTAGGTTTGGTTTTGCTTAGAGGTGAAGAAGTTATCTCAATGACTGTTGAAGG 366
Query 394 ACCACCTCCTCCTGAAGAATCTCGTGCTAAAGCTGGCTCTGCAGCTGCTGTTGCTGGTCC 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 ACCACCTCCTCCTGAAGAATCTCGTGCTAAAGCTGGCTCTGCAGCTGCTGTTGCTGGTCC 426
Query 454 AGGAATTGGCCGTGCCGCTGGGCGTGGAGTTCCTACTGGTCCGTTAGTTCAAGCTCAGCC 513
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 427 AGGAATTGGCCGTGCCGCTGGGCGTGGAGTTCCAACTGGTCCGTTAATTCAAGCTCAGCC 486
Query 514 TGGTTTATCTGGTCCTGTTCGTGGTGTTGGTGGACCTGCTCCGGGAATGATGCAGCCTCA 573
||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 487 TGGACTATCAGGTCCTGTTCGTGGTGTTGGTGGACCAGCTCCGGGAATGATGCAGCCTCA 546
Query 574 GATCTCTCGTCCACCACAGCTTTCAGCTCCTCCGATTATTCGACCTCCGGGACAGATGTT 633
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 547 GATCTCTCGTCCGCCACAGCTTTCGGCTCCTCCGATTATTCGACCTCCGGGACAGATGTT 606
Query 634 GCCACCGCCTCC---TTTTGGTGGTCAAGGTCCTCCTATGGGAAGAGGTCCTCCACCGCC 690
|||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 607 GCCACCTCCTCCAGCTTTTGGTGGTCAAGGTCCTCCAATGGGAAGAGGTCCTCCACCGCC 666
Query 691 TTATGGTATGAGGCCACCGCCACAGCAGTTTTCTGGACCACCACCGCCTCAGTATGGGCA 750
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 667 TTACGGTATGAGGCCACCGCCACAGCAGTTTTCTGGACCACCACCGCCTCAGTATGGACA 726
Query 751 AAGGCCAATGATTCCTCCTCCTGGTGGTATGATGAGAGGACCTCCTCCTCCACCTCATGG 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 AAGGCCAATGATTCCTCCTCCTGGTGGTATGATGAGAGGACCTCCTCCTCCACCTCATGG 786
Query 811 AATGCAAGGACCTCCTCCGCCTCGCCCTGGAATGCCTCCTGCTCCTGGTGGTTTTGCTCC 870
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 787 GATGCAAGGACCGCCTCCGCCTCGCCCTGGAATGCCTCCCCCTCCTGGTGGTTTTGCTCC 846
Query 871 ACCGCGTCCTGGCATGCCACCACATAATCAGCAGCAGTGATTAGGTTAGCAGTGAATGAA 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 ACCGCGTCCTGGCATGCCACCACATAATCAGCAGCAGTGATTAGGTTAGCAGTGAATGAA 906
Query 931 CAGGACTCTTGTCTCGGCTTTTTACTGTTTTTGTCGCTGTTTTCTTGAGATTATGAAGGC 990
| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 907 TATGACTCTTGTCTCGGGTTTTTACTGTTTTTGTCGCTGTTTTCTTGAGATTGTGAAGGC 966
Query 991 TTTAAGATGTTTGATTGAACTTCCTCAGGTTTACGGTATCGTGCTATCATGTTGCCTTTC 1050
|| ||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 967 TTAAAGTTGGTTGATTGAACTTCCTCAGGTTTACAGTATCGTGCTATCATGTTGCCTTTC 1026
Query 1051 ATTGACTTTAGCCGCAATTTCTCATCTATCTTAGCTTTCAAAGTTTGTAGATTTGTTGAC 1110
||||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1027 ATTGAATTTAGCCGCAATCTCTCATTTATCTTAGCTTGCAAAGTTTGTAGATTTGTTGAC 1086
Query 1111 GAGTGAGTTGTCTTTGCCTTATCTTCTTGTGTTTTCTTTT-AAGAACGAATCCAT-TAAA 1168
|||||||| ||||||||||||||||||||||||| ||||| ||||| ||| | || |||
Sbjct 1087 GAGTGAGT-GTCTTTGCCTTATCTTCTTGTGTTT-CTTTTTAAGAATGAA-C-ATCTAAC 1142
Query 1169 -CTTTGTTATGTCTTCTTAAGGTA 1191
||||||| || || || |||||
Sbjct 1143 TCTTTGTTTTGGATTGTTTAGGTA 1166
> Ahg494537 jgi|Araly1|494537|fgenesh2_kg.8__353__AT5G44500.1
Length=1094
Score = 582 bits (315), Expect = 2e-165
Identities = 611/746 (82%), Gaps = 51/746 (7%)
Strand=Plus/Plus
Query 129 CGGCGAGAATGTCGATGTCGAAGAGTTCAAAGATGCTTCAGTTCATCAACTACAGGATGC 188
|||||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 28 CGGCGAAAATGTCGATGTCGAAGAGCTCCAAGATGCTTCAGTTCATAAACTACAGGATGC 87
Query 189 GAGTGACGATCCAAGACGGAAGACAGCTCGTTGGGAAGTTCATGGCGTTTGACCGTCACA 248
|||| ||||||||||||||| | ||||| | || || ||||||||||| || |||||||
Sbjct 88 GAGTAACGATCCAAGACGGACGTCAGCTAATCGGAAAATTCATGGCGTTCGATCGTCACA 147
Query 249 TGAACCTCGTTCTCGGCGATTGCGAGGAGTTTCGTAAGCTTCCACCAG-CTAAAGG--G- 304
|||| |||||||||||||| ||||| |||||||| || ||||| || | | ||||| |
Sbjct 148 TGAATCTCGTTCTCGGCGACTGCGAAGAGTTTCGGAAACTTCCTCC-GACGAAAGGTAGT 206
Query 305 AAGAAGATC-AACGAAGAGCGTGAAGATCGCCGTACGCTAGGTTTAGTGTTGCTTAGAGG 363
||||||| | |||||||| | ||||| || |||||||| ||||| || || ||||||||
Sbjct 207 AAGAAGA-CGAACGAAGATAGAGAAGAGCGTCGTACGCTTGGTTTGGTTTTACTTAGAGG 265
Query 364 TGAAGAAGTTATCTCAATGACTGTCGAAGGACCACCTCCTCCTGAAGAATCTCGTGCTAA 423
|||||||| || ||||||||||||||||| ||||| || || ||||||||||| || ||
Sbjct 266 AGAAGAAGTGATTTCAATGACTGTCGAAGGTCCACCACCACCGGAAGAATCTCGCGCCAA 325
Query 424 AGCTGGCTCTGCAGCTGCTGTTGCTGGTCCAGGAATTGGCCGTGCCGCTGGGCGTGGAGT 483
| | || |||| | | || ||||||||||| ||||| || ||||| ||||| ||||| ||
Sbjct 326 ATCAGGATCTGTAACCGCCGTTGCTGGTCCCGGAATCGGTCGTGCTGCTGGACGTGGTGT 385
Query 484 TCCTACTGGTCCGTTAGTTCAAGCTCAGCCTGGTTTATCTGGTCCTGTTCGTGGTGTTGG 543
||||||||||| || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 386 ACCTACTGGTCCATTGGTTCAAGCTCAGCCTGGATTATCTGGTCCTGTTCGTGGAATTGG 445
Query 544 TGGACCTGCTCCGGGAATGATGCAGCCTCAGATCTCTCGTCCACCACAGCTTTCAGCTCC 603
||||||||||||||||||||||||||||||||||||| | ||||| || ||
Sbjct 446 TGGACCTGCTCCGGGAATGATGCAGCCTCAGATCTCTAGACCACC---GC----AG---- 494
Query 604 TCCGATTATTCGACCTCCGGGACAGATGTTGCCACCGCCTCCTTTTGGTGGT-CAAGGTC 662
|||||||| || || ||||| ||| |||||||||||| | |||| | | ||||
Sbjct 495 ----ATTATTCGTCCGCCAGGACAAATGCCGCCACCGCCTCCGTCTGGTTTTACT-GGTC 549
Query 663 CTCCTATGGGAAGAGGTCCTCCACCGCCTTATGGTATGAGGCCACCGCCACAGCAGTTTT 722
| || | | | |||||| || |||||||||||||| ||| || | || |
Sbjct 550 A----A-GG-A-G-G-TCCTCCTCCACCTTATGGTATGAG---ACC---AC--C-GTATC 591
Query 723 CTGGACCACCACCGCCTCAGTATGG-G--CAAAGGCCAATGAT--T-CCTCCTCCTGGTG 776
|||| |||||||||||||| ||||| | |||||||||||||| | ||||| |||||||
Sbjct 592 CTGGTCCACCACCGCCTCAATATGGTGGACAAAGGCCAATGATGATTCCTCCGCCTGGTG 651
Query 777 GTATGATGAGAGGACCTCCTCCTCCACCTCATGGAATGCAAGGACCTCCTCCGCCTCGCC 836
|||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||
Sbjct 652 GTATGATGAGAGGACCTCCTCC---ACCTCATGGGATGCAAGGACCGCCTCCGCCTCGCC 708
Query 837 CTGGAATGCCTCCTGCTCCTGGTGGT 862
||||||||||||| | |||||||||
Sbjct 709 CTGGAATGCCTCCACCGCCTGGTGGT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60373038325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5