BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G20450.1

Length=2697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946123 jgi|Araly1|946123|scaffold_702352.1                        300    4e-80


> Ahg946123 jgi|Araly1|946123|scaffold_702352.1
Length=544

 Score =  300 bits (162),  Expect = 4e-80
 Identities = 228/257 (89%), Gaps = 15/257 (6%)
 Strand=Plus/Plus

Query  1448  TAAACTTGAGTGGGAACAATCTTAGCGGCTCAATTCCTCAAAGCCTTC-TCAACATGGAA  1506
             |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct  250   TAAACTTGAGTGGGAACAATCTTAGCGGCTCAATTCCTCAAAGCCTTCGT-AACATGGCA  308

Query  1507  AAGAATGGGCTAATAACGTTGCT-GTATAATGGAAAT--AA-CCTCTGTTTGGATCCATC  1562
             || ||||||||||   ||||||| |  ||||||||||  || ||||||||||||||||||
Sbjct  309   AACAATGGGCTAA---CGTTGCTCGC-TAATGGAAATCCAAACCTCTGTTTGGATCCATC  364

Query  1563  ATGCGAAAGTGAAACTGGTCCTGGGAATAACAAAAAGAAATTGCTAGTACCTATTCTTGC  1622
              |||||||||||| |||||| ||| || |||| |||||||||||||||||||||||||||
Sbjct  365   GTGCGAAAGTGAAGCTGGTCATGGAAACAACATAAAGAAATTGCTAGTACCTATTCTTGC  424

Query  1623  ATCAGCTGCTTCTGTGGGAATTATTATAGCTGTGCTTCTTCTCGTCAACATTCTCTTACT  1682
             ||||||||||||||| || ||||||| |||||||||||||||| |||   ||||||| ||
Sbjct  425   ATCAGCTGCTTCTGTTGGTATTATTACAGCTGTGCTTCTTCTCATCA---TTCTCTT-CT  480

Query  1683  T-AGAAAGAAGAAGCCA  1698
             | |||||||||| ||||
Sbjct  481   TTAGAAAGAAGAGGCCA  497


 Score =  233 bits (126),  Expect = 4e-60
 Identities = 167/186 (90%), Gaps = 6/186 (3%)
 Strand=Plus/Plus

Query  974   ACTACAGTCCTCTAGAGTTCATGGCTGACACTGTACCTATAAGAACCTCGAGTAAATGCG  1033
             |||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct  1     ACTACAGTCCTCTAGAGTTCATGGCTGACACTGTACCTATCAGAACCTCTACTAAATGCG  60

Query  1034  GTGACGATGGTTTCTGCTCCCTAGATCTCACAAGAACTAAGTCGTCAACTCTTCCACCAT  1093
              ||   | | ||   ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  61    ATGTT-A-G-TT---GCTCCCTAGATCTTACAAGAACTAAGTCGTCAACTCTTCCACCAT  114

Query  1094  ATTGTAATGCGATGGAGGTTTTCGGGTTACTCCAGCTTCTTCAGACCGAAACAGATGAAA  1153
              ||||||||| || |||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct  115   CTTGTAATGCCATAGAGGTTTTCGGGGTACTCCAGCTTCTTCAGTCCGAAACAGATAAAA  174

Query  1154  ACGACG  1159
             ||||||
Sbjct  175   ACGACG  180



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 101739044395


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5