BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20460.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890118 jgi|Araly1|890118|Al_scaffold_0007_2104 1890 0.0
> Ahg890118 jgi|Araly1|890118|Al_scaffold_0007_2104
Length=1176
Score = 1890 bits (1023), Expect = 0.0
Identities = 1127/1178 (96%), Gaps = 4/1178 (0%)
Strand=Plus/Plus
Query 479 ATGGAATACTTAGAACCTAAAAGGAAGAGCAATGTAATGGGCAAGATTATCTTGGTTGTT 538
||||||||||| ||||| ||||||||||||||||| ||||||||| |||||||||| |||
Sbjct 1 ATGGAATACTTGGAACCCAAAAGGAAGAGCAATGTCATGGGCAAGCTTATCTTGGTAGTT 60
Query 539 TCTCTTACTGCTTTATGCATTTTTATGCTCAAGCACGCACCGAGTTTCACATCACCAACC 598
||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 61 TCTCTTACTGCGCTATGCATTATTATGCTCAAGCATGCACCGAGTTTCACATCACCAACC 120
Query 599 GCGTTCTCTCGTAGCGAGGAAGGTGTGACTCATGTGTTAGTCACTGGTGGTGCTGGATAT 658
||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 121 GCGTTTTCTCGCAGCGAGGAAGGCGTGACTCATGTGTTAGTCACTGGTGGCGCTGGATAT 180
Query 659 ATCGGATCACATGCTGCGTTGAGGCT-CTTAAAAGATTCATACCGTGTAACCATTGTGGA 717
||||||||||||||||| |||||||| | |||||||||||||||||||||||||| ||||
Sbjct 181 ATCGGATCACATGCTGCATTGAGGCTGC-TAAAAGATTCATACCGTGTAACCATTCTGGA 239
Query 718 CAATCTTTCTCG-GGGAAATCTTGGTGCCGTCAAGGTTTTACAAGGATTGTTCCCAGAAC 776
|||||||||||| ||| |||||||| || |||||||||||||| |||||||||||||||
Sbjct 240 CAATCTTTCTCGCGGG-AATCTTGGCGCTGTCAAGGTTTTACAGGGATTGTTCCCAGAAG 298
Query 777 CCGGGAGGCTTCAATTTATTTATGCTGACTTAGGAGATGCCAAAGCTGTTGATAAAATCT 836
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 299 CCGGGAGGCTTCAATTTATTTATGCTGACTTAGGAGATGCCAAAGCTGTCGATAAAATCT 358
Query 837 TCTCAGAGAACGCGTTTGATGCTGTTATGCATTTTGCTGCAGTAGCATATGTTGGAGAGA 896
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 TCTCAGAGAATGCGTTTGATGCTGTTATGCATTTTGCTGCGGTAGCATATGTTGGAGAGA 418
Query 897 GCACTCTAGATCCTCTAAAGTATTACCACAACATTACATCAAACACATTAGTAGTTCTTG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GCACTCTAGATCCTCTAAAGTATTACCACAACATTACATCAAACACATTAGTAGTTCTTG 478
Query 957 AAGCTGTGGCTAGACATAAAGTGAAGAAGTTGATATATTCAAGCACATGTGCCACTTATG 1016
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGCTGTGGCTAGACATAAAGTAAAGAAGTTGATATATTCAAGCACATGTGCCACTTATG 538
Query 1017 GAGAACCTGACAAGATGCCTATTGTTGAAGTTACTCCACAGGTCCCCATTAACCCTTATG 1076
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 GAGAACCTGACAAGATGCCTATTGTTGAAGTTACTCCACAGGTCCCGATTAACCCTTATG 598
Query 1077 GAAAAGCTAAGAAGATGGCTGAAGATATGATCCTGGATTTCTCTAAAAACTCTGACATGG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAAAAGCTAAGAAGATGGCTGAAGATATGATCCTGGATTTCTCTAAAAACTCTGACATGG 658
Query 1137 CAGTCATGATCCTAAGATACTTTAACGTGATAGGTTCAGATCCAGAAGGTAGACTAGGAG 1196
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 659 CAGTCATGATCCTAAGATACTTTAATGTGATCGGTTCAGACCCAGAAGGTAGACTAGGAG 718
Query 1197 AAGCTCCAAAGCCCGAGCTACGTGAACACGGACGGATTTCGGGTGCCTGTTTCGATGCAG 1256
|||||||||| || |||||||| ||||| || || ||||| ||||| |||||||||||||
Sbjct 719 AAGCTCCAAAACCAGAGCTACGCGAACATGGGCGAATTTCAGGTGCTTGTTTCGATGCAG 778
Query 1257 CTCGTGGCGTGATTCCAGGCCTTCAGGTCAAAGGAACAGACTACAAAACAGGAGATGGAA 1316
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 CTCGTGGCGTGATTCCAGGCCTGCAGGTCAAAGGAACAGACTACAAAACAGGAGATGGAA 838
Query 1317 CTTGTGTTCGTGACTACATAGATGTTACTGACCTTGTAGATGCTCACGTAAAAGCTCTCG 1376
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 839 CTTGTGTTCGTGACTACATAGACGTTACTGACCTTGTAGATGCTCACGTGAAGGCTCTCG 898
Query 1377 AGAAAGCTAAGCCTAGAAATGTGGGAATATACAATGTAGGTACAGGAAAAGGAAGATCGG 1436
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 899 AGAAAGCTAAGCCTAGAAATGTCGGAATCTACAATGTAGGTACCGGAAAAGGAAGATCGG 958
Query 1437 TGAAAGAGTTTGTGGAAGCATGTAAGAAAGCGACAGGAGTAGATATCAAAGTAGATTTTT 1496
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 959 TGAAGGAGTTTGTGGAAGCATGTAAGAAAGCAACAGGAGTAGATATCAAAGTAGATTTCT 1018
Query 1497 TGCCTCGAAGACCTGGAGATTACGCAGAGGTTTACAGTGATCCAGCAAAGATTCTGAGAG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCCTCGAAGACCTGGAGATTACGCAGAGGTTTACAGTGATCCAGCAAAGATTCTGAGAG 1078
Query 1557 ATCTTAATTGGTCTGCTCGTTACACTAATCTTCAAGAAAGTCTTGAGGTTGCTTGGAAGT 1616
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 ATCTGAATTGGTCTGCTCGTTACACTAATCTTCAAGAAAGTCTTGAAGTTGCTTGGAAGT 1138
Query 1617 GGCAAAAGACTCATCCCCATGGATATGCTTCTTCTTAA 1654
||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGCAAAAGACTCATCCCCATGGATATGCTTCTTCTTAA 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5