BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20720.1
Length=2493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470500 jgi|Araly1|470500|fgenesh2_kg.1__454__AT4G20720.1 2008 0.0
> Ahg470500 jgi|Araly1|470500|fgenesh2_kg.1__454__AT4G20720.1
Length=2392
Score = 2008 bits (1087), Expect = 0.0
Identities = 1313/1420 (92%), Gaps = 23/1420 (2%)
Strand=Plus/Plus
Query 1 CTCTCCAAATTGATCATCCTTCGATATTATTATTGATACAGAGGAGGAAGACTCAGAATC 60
||||||||||| ||||||||| | ||| ||||||||||||||| |||||||||| ||||
Sbjct 1 CTCTCCAAATTCATCATCCTT-G-GATT-TTATTGATACAGAGGGGGAAGACTCATAATC 57
Query 61 TTCATCCTCAAACCCTAGATTCCTTAACGAAATGGCGATGGAGATCTCGGTAGATCTGAT 120
|||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 58 TTCATCTTGAAACCCTAGATTCCTTAACGAAATGGCGATAGAGATCTCAGTAGATCTGAT 117
Query 121 AAACCAACTCAAGGTCTCGCTTCGAAAGGAGGCCAAGCTCACCTCCGTCGACGATTGCTC 180
|||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||
Sbjct 118 AAACCAACTCAAGGTCTCGCTTCGAAAGGAGGCCAAGCTCTCTTCCGTCGGCGATTACTC 177
Query 181 GGACTCATCCTTCC-CCAGCCTTCCCACATCCGAGGAGGCTATCGCAGAACTTGATGCTT 239
|||||||||| ||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 178 GGACTCATCC-TCCTCCAGCCTTCCCACATCAGAGGAGGCAATCGCAGAACTTGATGCTT 236
Query 240 CAGCTCCCTACCTTCGTTGCCGAAACTGCAAAGGAAAACTTTTACGAGGAATCGAGTCTC 299
||||||| ||||| || ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 237 CAGCTCCGTACCTCCGGTGCCGGAACTGCAAAGGAAAGCTTTTGCGAGGAATCGAGTCTC 296
Query 300 TGATCTGTGTCTTCTGTGGAAATCAGCAACGCACGAGTGATAATCCTCCTGATCCCATCA 359
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGATCTGCGTCTTCTGCGGAAATCAGCAACGCACGAGTGATAATCCTCCTGATCCCATCA 356
Query 360 AATTTACTTCCACTTCTGCTTACAAATGGTTTCTCACCTCTCTTAATCTCGATGGATCGG 419
||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 357 AATTTACCTCCACTTCTGCTTACAAATGGTTTCTCAGCTCTCTTAATCTCCATGGATCGG 416
Query 420 AGATGGTAGAGCCACTAAAGGAAACGGATGGGTCAAGCAGAGGAGCTACTAAGGCA-CCG 478
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 AGATGGTAGAGCCACTTAAGGAAACGGATGGGTCAAGCAGAGGAGCTACTAAGGCACCCA 476
Query 479 CCTTCAAAAGGAATTGCTTTGTCTAAGTTTCTTGATTTGGAAATACAATGGTCTGC-ATT 537
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 477 TCTT-AAAAGGAATTGCTTTGTCTAAGTTTCTTGATTTGGAAATACAATGGTCTGCAAGT 535
Query 538 AGAGGAGAAGTCTGATGATGGACAATCAGTACAGAAGAAAAACCCTCTGAATCTAGGCGG 597
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 536 -GAGGATAAGTCTGATGATGGACAATCAGTGCAGAAGAAAAACCCTCTGAATCTAGGCGG 594
Query 598 GATTAATCTTGATGATTATTTCGTTGAGCGGAGAGGAGATCTTTCCAAAGTGGAG-CAGG 656
|||||||||||||||| |||||||||| ||||||||||| |||||||||||||| || |
Sbjct 595 AATTAATCTTGATGATTTTTTCGTTGAGGGGAGAGGAGATGTTTCCAAAGTGGAGCCA-G 653
Query 657 CAGAGAGTAAACCTGT-G--GAGGATGATGATTTTAAGGATCCACGTAGTCTTAGCTTAT 713
||||||| |||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 654 CAGAGAGCAAACCTGTGGAAGAGGATGATGATTTTAAGGATCCACGTAGTCTTAGCCTAT 713
Query 714 TCGATAGTGTAAAGAGTCAGGGAGTTGTTGGATCGCAACAGCATGATAATGTTGGTTTGT 773
| ||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 714 TTGATAGTGTAAAGAGTGAGGGAGTTGTTGGATCTCAACAGCATGAAAATTTTGGTTTGT 773
Query 774 TTGATAAAAAAGATGCACCTAAGAGTGTTGTTTCTTCTGGGGAACATGAGAATCTTAGTT 833
|||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 774 TTGACAAAAAAGATGCACATAAGA--G-TGTTTCTTCTGGGGAACATGAGAATCTTAGTT 830
Query 834 TGTTTGCTGGACGAGATGCGCAGGAAAGTGTTTCTTTCGCAGCGCAGGGAAACTTTGGGT 893
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 831 TGTTTGCAGGACGAGATGCGCAGGAAAGTGTTTCTTTAGCAGCGCAGGGAAACTTTGGGT 890
Query 894 TCTTTGAGGAGAAAGATGCTCGGAACTCTTTTAAAGAGGATGAAAACCTTAGTTTGTTTG 953
|||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 891 TCTTTGAGGAAAAAGATGCTCGGAACTCTTTCAAAGAGAATGAAAACCTTAGTTTGTTTG 950
Query 954 AGGGTAAAGAAGATGCTCAGAGAACTAGTTCTTCTAAAGTGGATGAAAGTTTTGGTTTCT 1013
||||| | ||| |||||||| ||||||||||||| ||| |||||||||||||||||| |
Sbjct 951 AGGGT--A-AAGTTGCTCAGAAAACTAGTTCTTCTGAAGAGGATGAAAGTTTTGGTTTGT 1007
Query 1014 TTGAGGGTAAAGATGCTCAGAGAACTAGTTCTTCTAAAGACGATGAGAGTTTTGGTATGT 1073
|||||||||||||| ||||||||| ||||||||| ||||| ||| | | | |||| |||
Sbjct 1008 TTGAGGGTAAAGATACTCAGAGAAATAGTTCTTCCAAAGAGGATAAAAATCCTGGTTTGT 1067
Query 1074 TTGAAGGTAAAAAAGATGCTCAGAGAAATAGTTCTTCTAAAGAGGATGAGAGTTTTGGTA 1133
|| | || |||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 1068 TT-ATGG--GGAAAGATGCTCAGAGAACTAGTTCTTTTAAAGACGATGAGAGTTTTGGTA 1124
Query 1134 TGTTTGAAGGTAAAGAAGATGCTCAGAGAAATAGTTCTTCTAAAGAGAATGAAAATTTTG 1193
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1125 TGTTTGAAGGTAAAGAAGATGCTCAGAGAAATAGTTCTTCTAAAGAGGATGAAAATTTTG 1184
Query 1194 GTTTCTTTGAGGGTGCACCATTATCAAATGCTGACCTTAAGTCTTTTGATGACAAGATTG 1253
|||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 1185 GTTTGTTTGAGGGTGCACCATCATCAACTGCTGACCTTAAGTCTTTTGATGACAAGATCG 1244
Query 1254 TTGCTGCTTCTTCTGATTGGGACTCTGACTTTCAATCTGCTGATCAAAATCTTTCTCAGA 1313
|||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||
Sbjct 1245 TTGCCACTTCTTCTGATTGGGATTCTGACTTTCAATCTGCTGATCATAATCCTTCTCAGA 1304
Query 1314 AAAAGATTGATGGTGACCCATTTGTAAGTTCTCCAGTTGATTTGGCTGCTCATATGGATT 1373
||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AAAAGGTTGGTGGTGACCCGTTTGTAAGTTCTCCAGTTGATTTGGCTGCTCATATGGATT 1364
Query 1374 CTGTCTTTGGTTCCGGAAAAGATTTACTCTATGCACAACC 1413
||||||||||||||||||||||||||||||||||| ||||
Sbjct 1365 CTGTCTTTGGTTCCGGAAAAGATTTACTCTATGCAAAACC 1404
Score = 830 bits (449), Expect = 0.0
Identities = 512/543 (94%), Gaps = 2/543 (0%)
Strand=Plus/Plus
Query 1937 CCCTCTGGTGaaaaaaaTCCGGAAATGAACTTGTTTGGGGAAAATAACAATAACAGAGAC 1996
||| |||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||
Sbjct 1851 CCC-CTGGTGAAAAAAATCCGGAAATAAACTTGTATGGGGAAAATAACAATCATAGAGAC 1909
Query 1997 CTTGATTTTGATAGCATCTCACGTTCTGATTTCTTTTCTGAAAGTAGTGGCGGCAAAACC 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 CTTGATTTTGATAGCATCTCACGTTCTGATTTCTTTTCTGAAAGTAGTGGCGGCAAAACC 1969
Query 2057 AACTCAGAGGAAGTCAAAGTCATACCTTCTGGAACCTCAACCTTAGACAGACCGAGTGAT 2116
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1970 AACTCAGAGGAAGTCAAAGTCATACCTTCTGGAACCTCAACCTTAGACAGAACGAGTGAT 2029
Query 2117 CCTGATGGTAGTAAAGATCAAACAGTTGATCTTGTTGTAGGCACAACGACAACAGTTCCC 2176
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||
Sbjct 2030 CCTGATGGTAGTAAAGATCAAACAGTTGATCTTGTTGTGGGCACAACGACAGCAGCTCCC 2089
Query 2177 AAGTCAAAGAGTGATGTTGCGGAGGAGCTGATGTCACAGATGCATGATCTCTCATTTATG 2236
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2090 AAGTCAAAGAGTGATGTAGCGGAGGAGCTGATGTCACAGATGCATGATCTCTCGTTTATG 2149
Query 2237 CTCGAGACCAAACTTTCAGTGCCTCCAATCTCCAAGACAGAGTAATATT-ATCACAGTGT 2295
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||
Sbjct 2150 CTCGAGACCAAACTTTCTGTGCCTCCAATCTCCAAGACAGAGTAATATTTATCACACTGT 2209
Query 2296 ACTCTCTATCTCTCTTGCGCTCTCTTGTTTTTCCTGGGGCTTGGAGATTGCTTGTTTTCA 2355
|||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 2210 ACTCTCCATCTCTCTTGCGGTCTCTTGTTTTTACTGGGGCTTGGAGATTGCTTGTTTTCA 2269
Query 2356 TGTATATATATTTCATTTTCAATAACTTCAAGGATCCAATTTTACTTACTCTGTAACCCC 2415
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |
Sbjct 2270 CGTATATATATTTCATTTTTAATAACTTCAAGGATCCAATTTTACTTGCTCTGTAGCCAC 2329
Query 2416 AAGTGGTTGTTAGTCTAGTAGTATTGTTCATTGGGTTACATCCATTGATATTGGCCACAT 2475
| ||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||| |
Sbjct 2330 ATGTGGTTGTTAGTCTAGTGGTATTGTTCGTTCTGTTACTTCCATTGATCCTGGCCACTT 2389
Query 2476 GTG 2478
|||
Sbjct 2390 GTG 2392
Score = 634 bits (343), Expect = 0.0
Identities = 428/467 (92%), Gaps = 14/467 (3%)
Strand=Plus/Plus
Query 1440 CAAAAGCTGGCGATTGGTTGCAAGATGATTTATTTGGTAATGTCACTGGTGAGGCCCAAA 1499
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1398 CAAAACCTGGTGATTGGTTGCAAGATGATTTATTTGGTAATGTCACTGGTGAGCCCCAAA 1457
Query 1500 CCAACGACTCAGCCGTCCATGACAAGAATGAGGGACAGATTGTCGGTGGCAATGGAAATT 1559
|| ||||||||| |||||||| ||||||||||||||| |||| || |||||||||| ||
Sbjct 1458 ACAGCGACTCAGCTGTCCATGATAAGAATGAGGGACAGGTTGTGGGCGGCAATGGAAGTT 1517
Query 1560 CATCCATGGATATTGATTGGATCGGAGATGATCTATGGCAAACCAATGaaaaaaaaTCCA 1619
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1518 CATCCATGGATATTGATTGGATCGGAGATGATCTATGGCAAACCAATGAAAAGAAATCCA 1577
Query 1620 TTGAGAAGACCCCTACAGATGTTAATGATGATGATGACGATGACTGGAATGATTTTGCAA 1679
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1578 TTGAGAAGACCCCTACAGATGTTAATGATGATGA---CGATGACTGGAATGATTTTGCAA 1634
Query 1680 GCTCGGCTAACTCCAAGACTCCTAATAATCCACTTTCTCAAACCATGGAAAGTTCCCAAT 1739
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1635 GTTCGGCTAACTCCAAGACTCCTAATAATCCACTTTCTCAAACCATGGAAAGTTCTCAAG 1694
Query 1740 TTGAGATTTTTT-ATGGACATGCGCAAGATAAGAACGGTGTTAAAGAACAGAGCGTGGAT 1798
||| ||||||| |||| || ||||||| |||||| ||||||||||||||||| || |||
Sbjct 1695 ATGA-ATTTTTTTATGGGCAGGCGCAAGTTAAGAATGGTGTTAAAGAACAGAGAGTAGAT 1753
Query 1799 GAGAAGCAGAATACTGATACAAGCGTGATGTCTGACATAGGCAAATGTCAAGAAGATGAT 1858
|||||||||||||| | | |||||||||||||||||||| ||||||||||||||
Sbjct 1754 GAGAAGCAGAATAC-----C--G--TGATGTCTGACATAGGCAAAGGTCAAGAAGATGAT 1804
Query 1859 CTCTTTGGGACTTGGGATAGTTTCACATCCTCAACCATTCTGCAGAC 1905
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1805 ATCTTTGGGACTTGGGATAGTTTCACATCCTCAACCATTCCGCAGAC 1851
Score = 263 bits (142), Expect = 5e-69
Identities = 199/226 (88%), Gaps = 5/226 (2%)
Strand=Plus/Plus
Query 920 TCTTTTAAAGAGGATGAAAACCTTAGTTTGTTTGAGGGTAAAGAAGATGCTCAGAGAACT 979
|||| | |||||||||||| || |||||||||||||| | ||||| ||||||||| |
Sbjct 977 TCTTCTGAAGAGGATGAAAGTTTTGGTTTGTTTGAGGGT--A-AAGATACTCAGAGAAAT 1033
Query 980 AGTTCTTCTAAAGTGGATGAAAGTTTTGGTTTCTTTGA-GGGTAAAGATGCTCAGAGAAC 1038
|||||||| |||| |||| ||| | |||||| ||| | ||| |||||||||||||||||
Sbjct 1034 AGTTCTTCCAAAGAGGATAAAAATCCTGGTTTGTTT-ATGGGGAAAGATGCTCAGAGAAC 1092
Query 1039 TAGTTCTTCTAAAGACGATGAGAGTTTTGGTATGTTTGAAGGTAAAAAAGATGCTCAGAG 1098
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1093 TAGTTCTTTTAAAGACGATGAGAGTTTTGGTATGTTTGAAGGTAAAGAAGATGCTCAGAG 1152
Query 1099 AAATAGTTCTTCTAAAGAGGATGAGAGTTTTGGTATGTTTGAAGGT 1144
|||||||||||||||||||||||| | ||||||| ||||||| |||
Sbjct 1153 AAATAGTTCTTCTAAAGAGGATGAAAATTTTGGTTTGTTTGAGGGT 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93968634415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5