BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20760.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492810 jgi|Araly1|492810|fgenesh2_kg.7__2243__AT4G20760.1 1740 0.0
> Ahg492810 jgi|Araly1|492810|fgenesh2_kg.7__2243__AT4G20760.1
Length=1154
Score = 1740 bits (942), Expect = 0.0
Identities = 1086/1155 (94%), Gaps = 12/1155 (1%)
Strand=Plus/Plus
Query 11 TCGTTACCCATTTCTTCAATGAACACTCTGGTGAGGAGCGGTGGCGCGTGGCTGGTATCG 70
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1 TCGTTACCCATTTCTTCAATGAACACTCTGGTGAAGAGCGGTGGCGCGTGGCTAGTTTCG 60
Query 71 CCGTCAATGGCAGTGGCGGCTCTGAAGAGGATGAGAGTGTCTGGTTTAGCCACGTCATCA 130
||||| |||| |||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 61 CCGTCGTTGGCGGTGGTGGCTCTGAGGAAGATGAGAGTGTCTGGTTTAGCCACGTCATCA 120
Query 131 TCATCTTCTGTTCCTAATTGGAAAGGTGGAGTTTCCATGGTCCAAGGAGCTTCCAGAGGC 190
||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCATCTTCTTTTCCCAATTGGGAAGGTGGAGTTTCCATGGTCCAAGGAGCTTCCAGAGGC 180
Query 191 ATTGGTCTCGAATTTGTACGACAGTTGCTGGAGAACAATAAGAACGGGTATGTTGTTGCT 250
|| || |||||||||||| |||||||||||||||||||| |||| |||||||||||||||
Sbjct 181 ATCGGCCTCGAATTTGTAAGACAGTTGCTGGAGAACAATGAGAAAGGGTATGTTGTTGCT 240
Query 251 ACTTGCCGAAATCCAAAAGAAGCAACAAGTCTCTCTGATTTGAAGAACCGTTTCTCTGAA 310
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 ACTTGCCGAAATCCAAAAGAAGCAACAAGTCTCTCTGATTTGAAGAATCGTTTCTCTGAA 300
Query 311 AGACTTTTCATCCAAAAGCTTGATGTTACAGATGAAACTACCATTGAGGAATCAGCGGAA 370
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGACTGTTCATCCAAAAGCTTGATGTTACAGATGAAACTACCATTGAGGAATCAGCGGAA 360
Query 371 TCTGTGAGAGAAAAATATGGTTCTCTCAATCTACTTATAAATGCAGCTGGTATACTTTCA 430
||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 361 TCTGTGAGAGAAAGATATGGTTCTCTCAACCTTCTTATAAATGCAGCTGGTATACTCTCC 420
Query 431 ATTCCTGGCGTATTGCAGCCAGAAACAACATTGAACAAGGTCGAAAAATCATCGTTGATG 490
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 ATTCCTGGCGTATTGCAGCCAGAAACAACATTGAACAAAGTTGAAAAATCATCGTTGATG 480
Query 491 CTTGCTTACGAGGTTAACGCTGTTGGTCCAATTCTAGTGATGAAGCATATGTGGCCTCTC 550
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CTTGCTTACGAGGTTAACGCTGTTGGTCCAATTCTAGTGATGAAGCATATGTGGCCACTC 540
Query 551 CTTAAGGCTGGTGGAGGTAGTGGAACAGATAGAGAAGTTGCTGTTGTAGCCAATTTAAGC 610
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 541 CTTAAGGCTGGTGGAGGTAGTGGAACTGAGAGGGAAGTTGCTGTTGTAGCCAATTTAAGC 600
Query 611 GCTCGAGTTGGATCCATTGGAGATAACCGACTTGGTGGTTGGCACTCTTACAGGGCTTCA 670
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCCGCGTTGGATCCATTGGAGATAACCGACTTGGTGGTTGGCACTCTTACAGGGCTTCA 660
Query 671 AAATCCGCACTCAATCAACTGACAAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGAT 730
||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAACAGCACTCAATCAACTGACGAAAAATGTATCGGTTGAGTTAGGTAGGAGGAAAGAT 720
Query 731 CCTGTGGCATGCATTCTACTACATCCAGGCACAGTAGACACTGATCTCTCTCGGCCGTTT 790
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCTGTGGTATGCATTCTACTGCATCCAGGCACAGTAGACACTGATCTCTCTCGGCCGTTT 780
Query 791 CAAAGGAATGTTCCTGACGGAAAACTTTTCACAAGAGAGTACTCTGTTCAGAAGTTACTG 850
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 781 CAAAAGAATGTTCCTGATGGAAAACTTTTCACAAGAGAGTACTCTGTTCAGAAGTTATTG 840
Query 851 CACATCATCAACAATACTAAGAAACAAGACAGCGGCAAGTTCTTTGCTTGGGATGGCCAG 910
||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 841 CACATCATCAACAATGCTAAGAAACAAGATAACGGCAAGTTCTTTGCTTGGGATGGCCAG 900
Query 911 GAGATACCTTGGTGATTTCTT-ATATGGTTTTCTCGATCCGAATGGTCAGTTCTTTCAAA 969
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 901 GAGATACCTTGGTGATTTCTTGAT-TGGTTTTCTCGATCCGAATGGTCAGTTCTTTCAAA 959
Query 970 GTCTATTGAATTCTTGTCGGGGTTTTTT---CACGTTCTTGGTTTGAGAGCAATTCCTCG 1026
|||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |
Sbjct 960 TTCTATTGAATTCTTGTCGGGTTTTTTTGTTCACTTTCTTGGTTTGAGAGCAATTCCTTG 1019
Query 1027 -AGTAATATCGAATAGCTTGGAGTGAGTATCCAGAAGCTGAGAGCTTTCTGAGTATAT-A 1084
||||| |||||||| ||||||||||| ||||||||||||||||| |||||| ||||| |
Sbjct 1020 GAGTAAAATCGAATAACTTGGAGTGAGCATCCAGAAGCTGAGAGCATTCTGACTATATTA 1079
Query 1085 -A-TAAC---CAATGTGATGGTATAATCTTCTATCTACATTTTGTATTACTGCATAATTT 1139
| ||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 1080 TAATAATAATCAATGTGATGGTATAAACTTCTATCTACATTGTGTATTACTACATAATTT 1139
Query 1140 TACACGCTATTTTCG 1154
||||| |||||||||
Sbjct 1140 TACACACTATTTTCG 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5