BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20780.1
Length=785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890114 jgi|Araly1|890114|Al_scaffold_0007_2100 883 0.0
> Ahg890114 jgi|Araly1|890114|Al_scaffold_0007_2100
Length=567
Score = 883 bits (478), Expect = 0.0
Identities = 546/577 (95%), Gaps = 11/577 (2%)
Strand=Plus/Plus
Query 87 atggagagtaacaacaacgagaagaagaaagttgcaagaCAATCATCATCCTTCAGACTA 146
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGAGAGT---AACAACGAGAAGAAGAAAGTTTCAAGACAATCATCATCCTTCAGACTA 57
Query 147 CGTAGCCCAAGCCTAAACGCACTTCGTCTCCAACGAATCTTCGACTTATTCGACAAAAAC 206
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CGAAGCCCAAGCCTAAACGCACTTCGTCTCCAACGAATCTTCGACTTATTCGACAAAAAC 117
Query 207 GGCGACGGATTCATAACCGTCGAAGAGCTAAGCCAAGCTCTAACACGTCTTGGTCTCAAC 266
|||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 118 GGCGACGGATTCATTACCGTTGAAGAGCTAAGCCAAGCTCTATCACGTCTCGGTCTCAAC 177
Query 267 GCTGATCTCTCCGATCTCAAATCCACCGTTGAATCATACATCCAACCTGGTAACACTGGT 326
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 178 GCTGATCTCTCCGATCTCAAATCCACCGTTGAATCCTACATTCAACCTGGTAACACTGGT 237
Query 327 CTCAATTTCGATGATTTCTCTTCTCTTCACAAAACACTCGACGATTCTTTCTTCGGTGGA 386
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTCAATTTCGACGATTTCTCTTCTCTTCACAAAACACTCGACGATTCTTTCTTCGGTGGA 297
Query 387 GCTTGTGGAGGAGGAGAAAACGAAGATGATCCTTCTTCCGCAGCTGAAAATGAATCGGAT 446
||||||||| || ||||||||||||| | |||||||| | || || |||||||||||
Sbjct 298 GCTTGTGGA-GA--AGAAAACGAAGAT--T-CTTCTTCCCCCGCCGAGGATGAATCGGAT 351
Query 447 CTCGCCGAGGCGTTTAAGGTGTTT-GATGAGAACGGTGATGGATTCATCTCCGCTAGAGA 505
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 352 CTCGCGGAGGCGTTTAAGGT-TTTCGATGAGAACGGTGATGGATTCATCTCCGCTAGGGA 410
Query 506 ACTGCAAACTGTTCTGAAGAAACTTGGTTTACCTGAAGGTGGAGAAATGGAGAGAGTGGA 565
| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 411 ATTGCAAACGGTTCTGAAGAAACTTGGGTTACCTGAAGGTGGAGAGATGGAGAGAGTGGA 470
Query 566 GAAGATGATCGTTTCCGTTGACCGGAATCAAGATGGTCGCGTTGACTTTTTTGAATTCAA 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GAAGATGATCGTTTCCGTTGACCGGAATCAAGATGGTCGCGTTGACTTTTTTGAATTCAA 530
Query 626 GAACATGATGCGTACTGTTGTCATCCCTTCTTCTTGA 662
|||||||||||||||||||||||||||||||||||||
Sbjct 531 GAACATGATGCGTACTGTTGTCATCCCTTCTTCTTGA 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28973416920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5