BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20790.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329520 jgi|Araly1|329520|fgenesh1_pm.C_scaffold_7001747 2340 0.0
> Ahg329520 jgi|Araly1|329520|fgenesh1_pm.C_scaffold_7001747
Length=1554
Score = 2340 bits (1267), Expect = 0.0
Identities = 1468/1564 (94%), Gaps = 17/1564 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCTTC--TC-TGTTCTTCATCTTCTTCCTCACGTCACTACT-ATCATCCTATCT 56
||||||||||| || | ||||||||||||||||||| ||||| | ||||||||| ||
Sbjct 1 ATGGCGTCTTCTGTCTTCTTCTTCATCTTCTTCCTCA---CACTA-TCATCATCCTACCT 56
Query 57 TCCTCTCTCAGTATTCTCCGCAACCGTCGTCGAAGACCTCGCTAATCT-AAGTCCACCTC 115
|||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||
Sbjct 57 TCCTCTCTCAGTATTCTCAGCAACCGTCGTCGAAGACCTTGCTAATCTCAA-TCCACCTC 115
Query 116 CTGATTTCAACACCACTATTTCCAACAACTGTCTTCGTGATCCAATGCTCCGTTACTGCA 175
||||||||||||| || ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 116 CTGATTTCAACACAACCATTACCAACAACTGTCTTCGTGATCCGTTGCTCCGTTACTGCA 175
Query 176 ACAACACTTCCTCTTCTCCAATGGACATTGTCGAGATTTTCAGATCCACAATCGTCGCTA 235
|||||||||| |||||||| ||||||| || ||||| ||||||||||||||||||||||
Sbjct 176 ACAACACTTCTTCTTCTCCGTTGGACATCGTTGAGATCTTCAGATCCACAATCGTCGCTA 235
Query 236 GTCATCTCTGTAACGAGTCCAAAAACCCTAACTGCGTTGAATCTTTCCCTAGAATCAGAA 295
||||||| || ||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 236 GTCATCTTTGCAACGAGTCCAAGAACCCTAACTGCGTCGAATCTTTCCCCAGAATCAGAA 295
Query 296 TTCACGGTCGTCCTAAAACCGCTGCTCTTTACCTCTCTTTCGATTTCTTCTGGAAGTACT 355
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 296 TCCACGGTCGTCCTAAAACCGCTGCGCTTTATCTCTCTTTCGATTTCTTCTGGAAGTACT 355
Query 356 GTCCTTTAACCGTCGTTGATATCGAGTTAGTGAATAACTCTCT-AACGAATGGTTTTCCG 414
|||| ||||||||||||||||| |||||||||||||||||||| || |||||| ||||||
Sbjct 356 GTCCATTAACCGTCGTTGATATTGAGTTAGTGAATAACTCTCTCAA-GAATGGGTTTCCG 414
Query 415 ACAAATGTTCTGTCTTGTGCTCAGATTCGTACTCTTGATCTGAGTTACAACCAATTCTCT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 ACAAATGTTCTGTCTTGTGCTCAGATTCGTACTCTTGATCTGAGTTACAACCAATTCTCT 474
Query 475 GGTTTTGTTCCGGTTCAAGATCTCTCAGGCTTACCCAATCTGACCCATTTGAACCTATCG 534
|| ||||||||||| || |||||||| || ||||||||||||||||||||||| ||||||
Sbjct 475 GGGTTTGTTCCGGTCCAGGATCTCTCTGGATTACCCAATCTGACCCATTTGAATCTATCG 534
Query 535 TATAACCGATTCTCCGAGAATAAGATCTCGGATTCTGAGTTCTTCAAACGGTTTAACGCC 594
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TATAACCGTTTTTCCGAGAATAAGATCTCGGATTCTGAGTTCTTCAAACGGTTTAACGCC 594
Query 595 TCTAGTTTCATACAGTCCGGTGTTCTTCCCAACGTGAAGCGTTACAAGATGAAAGTTTTG 654
|| ||||||||||| ||||||||||||||||| || |||||||||||| ||||| |||||
Sbjct 595 TCGAGTTTCATACAATCCGGTGTTCTTCCCAATGTCAAGCGTTACAAGTTGAAAATTTTG 654
Query 655 GTCTTGTTGATTGTTTTTCCAATAATGGTGATTTTGCTCTGTTTTTGCTTTGGCTGGTTA 714
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 655 GTCTTGTTGATTGTCTTTCCAATAATGGTGATTTTGCTCTGTTTTTGCTTTGGATGGTTA 714
Query 715 TGTGTCAAGAGACCTGATTACTTACCAAGAACATGCCGGAGAAGAAACAAGTTCACATTC 774
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 715 TGTATCAAGAGACCTGATTACTTACCAAGAACATGCCGGAGAAGCCACAAGTTCACATTC 774
Query 775 GCGATGCTTGAAGCAGCAACGGATGAGTTTTCAGATCAACATCTTGTGAGCATGAGCAAT 834
|||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 775 GCGATGCTAGAAGCAGCAACAGATGAGTTTTCAGATCAACATCTTGTGAGCACGAGCAAT 834
Query 835 ACAGTGGATATCTACAAAGGAACGTTAAGAGACGGGACAGAGACGAAGATCGAGGTTTAT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 ACAGTGGATATCTACAAAGGAACGTTAAGAGACGGGACAGAGACGAAGATCGAGGTTTAT 894
Query 895 AAAGAGAAGGTTTCGAGTGAGAAAAGGCGTGAATTCGCAGAGGTATGCGAGATGGTTTTT 954
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 895 AAAGAGAAGGTTTCGAGTGAGAAAAGGCGTGAATTCGCAGAGGAATGCGAGGCAGTTTTC 954
Query 955 AAGTTACGACACAAGAACTTGGTAAGAGTGTTGGGTTGGTGTAATAGTAGAAACATGAGA 1014
|||||| |||||||||| ||| ||||||| ||||||||||| ||||| ||||||||||||
Sbjct 955 AAGTTAAGACACAAGAATTTGCTAAGAGTTTTGGGTTGGTGCAATAGCAGAAACATGAGA 1014
Query 1015 GCTTTGGTTACAGAATGGATTCAAGGTGAAAATGTTGAGACTTGGTTAAGTTCGTCAAT- 1073
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
Sbjct 1015 GCTTTGGTTACAGAATGGATTCAAGGAGAAAATGTTGAGACTTGGTTAAGTTCTTCA-TC 1073
Query 1074 GGCTTTATCATGGAGAAGAAGGTTAAGAGTAGTTCTAGGAGTTGTAGAAGGTATTTGTTA 1133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 GGCTTTATCATGGAGAAGAAGGTTAAGAGTAGTTTTAGGAGTTGTAGAAGGTATTTGTTA 1133
Query 1134 TCTATCAGATCAATGGCCAGAGATTACATTTGATCTCACCACAAGCAGTGTTTTGTTATC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TCTATCAGATCAATGGCCAGAGATTACATTTGATCTCACCACAAGCAGTGTTTTGTTATC 1193
Query 1194 CGATGATAATCAAGAACCTTTGATTTCTCATTTCAAGATTGGAGATAGAAACAACTTGTC 1253
||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 1194 CGATGATAATCAAGATCCTTTGATTTCTCATTTCAAGGTTGGAGATGGAAACAACTTATC 1253
Query 1254 AACAAATATATTCAACTTTGGATTGTTTTTTGTGGAGATGATTACAAATCTAAGACCTGA 1313
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1254 AACAAATATATTCAACTTTGGATTGTTTCTTGTGGAGATGATTACAAATCTTAGACCTGA 1313
Query 1314 TTTGGGACAAGAAGATTCAGAAAGAAGGTATCTTGAGTATATAAGAGTTCATTATCCGGA 1373
| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1314 TATGGAACAAGAAGATTCAGAAAGGAGGTATCTCGAGTATATAAGAGTTCATTATCCGGA 1373
Query 1374 TAATCTAGAGAGAGTGATTGATGAGAAGATGAAGATTGAGGGGAGAACATTTGATCAAGT 1433
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1374 TAATCTAGAGAGAGTGATTGATGAGAAGATGAAGATTGATGAGAGAACATTTGATCAAGT 1433
Query 1434 TAAGCAAGCCATTACGCTAGGACTGATGTGTACTGATATAATACCACCATTAAAGCAACC 1493
||||||||||||||| || ||||||||||| ||||||| || |||||||| ||||||||
Sbjct 1434 TAAGCAAGCCATTACTCTTGGACTGATGTGCACTGATA-AA--CCACCATTGAAGCAACC 1490
Query 1494 AAGCTTGACGCAGATTTATGACTTGGTGAGTTCATTGTATGAGTCTAGTTCACGACATCA 1553
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1491 AAGCTTGACGCAGATTTATGACTTGGTGAGTTCATTGTATGAGTCTAGTTTACGACATCA 1550
Query 1554 TTGA 1557
||||
Sbjct 1551 TTGA 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5