BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20800.1
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492806 jgi|Araly1|492806|fgenesh2_kg.7__2239__AT4G20800.1 2385 0.0
Ahg472780 jgi|Araly1|472780|fgenesh2_kg.1__2734__AT1G26390.1 1136 0.0
Ahg472778 jgi|Araly1|472778|fgenesh2_kg.1__2732__AT1G26420.1 1013 0.0
> Ahg492806 jgi|Araly1|492806|fgenesh2_kg.7__2239__AT4G20800.1
Length=1626
Score = 2385 bits (1291), Expect = 0.0
Identities = 1507/1612 (93%), Gaps = 11/1612 (1%)
Strand=Plus/Plus
Query 35 TTCAATCAAAGTAATGAAAGAAGTAGTTTATGTTCTGCTACTTGTTCTTCTTGTTTCGGT 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTCAATCAAAGTAATGAAAGAAGTAGTTTATGTTCTGCTACTTGTTCTTCTTGTTTCGGT 61
Query 95 TTCAGATGCAAATGAAACGAAACCAAATATTGAAAACTTCCTCCGATGCCTTCGTAATCG 154
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 TTCAGATGCAAATGAAACGAAACCAAATACTGAAAACTTCCTCCGATGCCTTCGTAATCG 121
Query 155 GACCAATCCGAAGAATCCGATCGCCGAAGCCATCTATACTCATGAGAACTCCACCTTCGC 214
||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||
Sbjct 122 GACCAGTCCGAAGAATCCGATCACTGAAGCCCTCTATACTCATGAGAACTCCACCTTCGT 181
Query 215 GTCTTCTTACGTGTCCTACACGAATAACAAACGGTGTTTAAACCCTAACGACACAAAACT 274
||| |||||||||||||||||||| || ||||||| | |||||||||||||||||||||
Sbjct 182 GTCATCTTACGTGTCCTACACGAAAAATAAACGGTACTCAAACCCTAACGACACAAAACT 241
Query 275 AATCGCCATTGTTGCTGCAAAACATGAATCTCATGTTCAAGCAACTGTGGTTTGCGCAAA 334
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 242 AATCGCCATTGTTGCTGCAAAACATGAATCTCATGTTCAGGCAACCGTGGTCTGCGCAAA 301
Query 335 -GTCAAACGGAATCCAGATCCGTATCCGAAGCGGCGGTCACGACTACGAGGGACTTTC-T 392
||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 302 GGTC-AATGGAGTCCAGATCCGTATCCGAAGCGGCGGTCACGACTATGAGGGACTTTCAT 360
Query 393 TTCACCTCCTCCGTTCCGTTTGTTATCCTTGACATGCACGATCTCCGGTCTATAACCATT 452
| | |||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 361 AT-ATCTCCTCTGTTCCGTTTGTTATTCTCGACATGCACGATCTCCGGTCTATAACCATT 419
Query 453 GACGTGTTCAGAAAGCAAGCTTGGGTTGATGCTGGTGCGACCATGGGAGAGCTCTACACC 512
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 GACGTGTTCAGAAAGCAAGCTTGGGTTGATGCAGGTGCGACCATGGGAGAGCTCTACACC 479
Query 513 AAGATCGCAGCGGCTAGCAAAACCCTAGCATTTGCGGGTGGCGTTTGCCCTACATTAGGA 572
|| ||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 480 AAAATCGCAGAGGCTAGCAAAACGCTAGCGTTTGCGGGTGGCGTTTGTCCTACATTAGGG 539
Query 573 GCTGGAGGACACATCAGTGGCGGAGGATACGGAAATCTGATAAGAAAGTACGGAATCTCG 632
|| |||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||
Sbjct 540 GCGGGAGGACACATCAGCGGCGGAGGATACGGAAATTTGATTAGAAAGTACGGAATTTCA 599
Query 633 GTCGATCATGTGGTTGATGCTCGAATAGTTGATGTCAACGGCAATATCTTGACAGGAGCT 692
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTCGATCATGTCGTTGATGCTCGAATAGTTGATGTCAACGGCAATATCTTGACAGGAGCT 659
Query 693 ACCTTGGGACGTGATCTATTGTGGGCTATTCGAGGCGGTGGGGGCGCTAGCTTTGGCGTT 752
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 660 ACCTTGGGACGTGATCTATTGTGGGCTATTCGAGGCGGTGGGGGCGCAAGCTTCGGAGTT 719
Query 753 ATCCTCTCGTGGAAAATCAACCTCGTCGATGTTCCAAAGACCGTGACTGTTTTTAAGGTT 812
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 ATCCTTTCCTGGAAAATCAACCTCGTCGATGTTCCAAAGACCGTGACAGTTTTTAAGGTT 779
Query 813 AACAAAACCTTGGAGCAAGGAGTTACTGATGTTCTCTACAAATGGCAGCTTGTGTCGAGC 872
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 780 AATAAAACATTGGAACAAGGAGTTACTGATGTTCTCTACAAATGGCAGCTTGTCTCTAGC 839
Query 873 AAATTGCCTCAAGACCTTTTCTTGAGAGCAATGCCT-AAACCGGTAAATGGCGTGGTACC 931
|||||||||| ||||||||||||||||||||||||| || | ||||||||| ||||||
Sbjct 840 AAATTGCCTCGAGACCTTTTCTTGAGAGCAATGCCTCAAGTC-ATAAATGGCGCGGTACC 898
Query 932 TAGCGAGAAAACCATCGCAGTTGTGTTCTACGCTCAGTTTTTAGGCTCAGCAAGGAGGCT 991
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 899 TAGCGAGAAAACCATCGCGGCTGTGTTCTACGCTCAGTTTTTAGGCTCAGCAAGGAGGCT 958
Query 992 CATGGCGATTATGAACAAGAATTTGCCTGAATTAGGGCTAAAACGTGAAGATTGCTACGA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATGGCGATTATGAACAAGAATTTGCCTGAATTAGGGCTAAAACGTGAAGATTGCTACGA 1018
Query 1052 AATGAGCTGGATTAATACGACAACGTTTTGGCAGAACTATCCTGTGGGAACATCGACAAG 1111
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 AATGAGCTGGATTAATACGACAATGTTTTGGCAGAACTATCCTGTGGGAACATCGACAAG 1078
Query 1112 CGTTTTATTGGATAGACCATCGGGTCCCGC-AGGAGCATTCTACAAGAGTAAATCGGATT 1170
| || |||||| ||||||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct 1079 CCTTCTATTGGCTAGACCATCGGATCC-GCCAGGAGCATTCTTCAAGAGTAAATCGGATT 1137
Query 1171 ACGTCAAGAAACCGATCCCAAAGGAAGAAATGGAGAAGATCTGGAAAGCAATGTTGAAGT 1230
||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 1138 ACGTCAAGAAACCAATCCCAAAAGAAGGAATGGAGAAGATCTGGAAAACAATGTTGAAGT 1197
Query 1231 TCAACAATATGTGGATGCAATGGAACCCTTACGGTGGAGTGATGGACAAGATTCCTGCTG 1290
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1198 TCAACAATATGTGGATGCAATGGAACCCTTACGGCGGAGTGATGGACAAGATTCCGGCTG 1257
Query 1291 ATGCCACCGCGTTTCCTCATCGAAAAGGAAACTTGTTCAAGATTCAGTACTTTGCGTTAT 1350
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATGCCACGGCTTTTCCTCATCGAAAAGGAAACTTGTTCAAGATTCAGTACTTTGCGTTAT 1317
Query 1351 GGACAGACGCAAACGCCACATACGCTAATCTTGGTCTAATGAGAGATATATACCATGAGA 1410
|||||||||||||||||||| |||||||||| ||||| |||| ||| || ||| ||||||
Sbjct 1318 GGACAGACGCAAACGCCACAGACGCTAATCTCGGTCTGATGAAAGAGATTTACGATGAGA 1377
Query 1411 TGGAGCCGTACGTGTCAAGTAACCCTAGAGAGGCGTTCTTGAATTACAGAGATATCGATG 1470
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1378 TGGAGCCGTACGTGTCAAGCAACCCGAGAGAGGCGTTCTTGAATTACAGAGATATCGATG 1437
Query 1471 TCGGAAGCAATCCGAGTGGTGAGACCAATCTTGAAGAAGCT--A-AGATCTATGGATCGA 1527
||||||||||| |||||| | |||||| ||||||||||| | ||||||||||||| |
Sbjct 1438 TCGGAAGCAATATTAGTGGTAAAACCAATGTTGAAGAAGCTGCAGAGATCTATGGATCCA 1497
Query 1528 AGTATTTCTTGGGGAATTTTAAGAGATTGATGGAAGTTAAAGCAAAGTATGATCCTGAGA 1587
||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 1498 GGTATTTCTTGGGGAACTTTAAGAGATTGATGGAAGTTAAAGCTAAGTATGACCCTCAGG 1557
Query 1588 ATTTCTTTAGATTCGAACAAAGTATTCCTCCTGCTAGTGCAATGTAACTCTT 1639
||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 1558 ATTTCTTTAGATTCGAACAGAGTATTCCTCCTGTTCGTGCAATGTAACTCTT 1609
> Ahg472780 jgi|Araly1|472780|fgenesh2_kg.1__2734__AT1G26390.1
Length=1653
Score = 1136 bits (615), Expect = 0.0
Identities = 1310/1635 (80%), Gaps = 90/1635 (6%)
Strand=Plus/Plus
Query 47 AATGAAAGAAGTAGTTTATGTTCTGCT-ACTTGTTCTTCTTGTTTCGGTTTCAGATGCA- 104
||||||||||| | ||| |||| || | ||||| ||||| |||||||||| ||| |||
Sbjct 1 AATGAAAGAAGCACTTTCTGTTTTG-TGTCTTGTACTTCTGGTTTCGGTTTTAGAAGCAG 59
Query 105 AATGAAACGAAACC-AAATATTGAAAACTTCCTCCGATGCCTTCG-TAATCGGACCAATC 162
| | ||||||||| |||| ||||| ||||| || |||||||||| | |||| || | ||
Sbjct 60 CA-GTAACGAAACCAAAAT-TTGAAGACTTCATCGGATGCCTTCGCT-ATCGTACTAGTC 116
Query 163 CGAAGAATCCGATCGCCGAAGCCATCT--ATAC-TC-ATGAGAACTCCACCTTCGCGTCT 218
|| ||||||| ||| |||| ||||||| || | | || | | | || ||||| |||
Sbjct 117 CGGAGAATCCAATCACCGATGCCATCTCCAT-CGCCGATAACACCACCGCCTTCTTGTCC 175
Query 219 TCTTACGTGTCCTACACGAATAACAAACGGTGT-TTAAACCCTAACGACACAAAACTAAT 277
|||||||| ||||||||||| |||||| ||| | || | |||||| | | ||||||| |
Sbjct 176 TCTTACGTATCCTACACGAAAAACAAAAGGT-TCTTGAGCCCTAATTATAAAAAACTACT 234
Query 278 CGCCATTGTTGCTGCAAAACATGAATCTCATGTTCAAGCAACTGTGGTTTGCGCAAAGTC 337
||||| || || |||||||||| |||||||||||| || || || || |||||||||||
Sbjct 235 AGCCATAGTGGCCGCAAAACATGCATCTCATGTTCAGGCCACGGTAGTCTGCGCAAAGTC 294
Query 338 AAACGGAATCCAGATCCGTATCCGAAGCGGCGGTCACGACTACGAGGGACTTTCTTTCAC 397
|| || |||||| ||||||| |||||||||||||| |||||||| || ||||||| ||
Sbjct 295 CAATGGTATCCAGCTCCGTATACGAAGCGGCGGTCATGACTACGAAGGCCTTTCTTACAT 354
Query 398 CTCCTCCGTTCCGTTTGTTATCCTTGACATGCACGATCTCCGGTCTATAACCATTGACGT 457
|| || || || |||||||| || || ||| || |||| ||||||| || |||||||
Sbjct 355 GTCGTCTGTGCCATTTGTTATTCTCGATATGTACAATCTGAGGTCTATTACTGTTGACGT 414
Query 458 GTTC-AGAAAGCAAGCTTGGGTTGATGCTGGTGCGACCATGGGAGAGCTCTACACCAAGA 516
| || || ||| |||| |||||| | |||||||||||| |||||||||||||||| |||
Sbjct 415 G-TCAAGCAAGAAAGCGTGGGTTCAAGCTGGTGCGACCTTGGGAGAGCTCTACACAAAGG 473
Query 517 TCGCAGCGGC-T-AGCAAAACCCTAGCATTT-GCGGGTGGCGTTTGCCCTACATTAGGAG 573
| || | | | ||| |||| ||||| ||| ||| |||||||||| |||| ||||||
Sbjct 474 T--CAATGACGTAAGCCAAACACTAGC-TTTCCCGGCTGGCGTTTGCGCTACCGTAGGAG 530
Query 574 CTGGAGGACACATCAGTGGCGGAGGATACGGAAATCTGATAAGAAAGTACGGAATCTCGG 633
|||| || ||||| ||||| ||||| || ||||||||||| ||||| ||||||||| | |
Sbjct 531 CTGGTGGGCACATAAGTGGTGGAGGGTATGGAAATCTGATGAGAAAATACGGAATCACTG 590
Query 634 TCGATCATGTGGTTGATGCTCGAATAGTTGATGTCAACGGCAATATCTTGACA-GGAGC- 691
| ||| |||| ||||||||| |||| ||||||||||||| || |||||| | || |
Sbjct 591 TGGATAATGTCATTGATGCTCAAATAATTGATGTCAACGGAAAGCTCTTGA-ATCGA-CT 648
Query 692 TACCTTGGGACG-TGATCTATTGTGGGCTATTCGAGGCGGTGGGGGCGCTAGCTTT-GGC 749
|||| ||||| | ||||| || ||||| ||||| |||||||| || | || ||| ||
Sbjct 649 TACCATGGGA-GAGGATCTCTTTTGGGCGATTCGTGGCGGTGGCGGTGGGAG-TTTCGGA 706
Query 750 GTTATCCTCTCGTGGAAAATCAACCTCGTCGATGTTCCAAAGACCGTGACTGTTTTTAAG 809
||||||||||| |||||||||||||||||||| |||||||||| |||||| || ||||||
Sbjct 707 GTTATCCTCTCTTGGAAAATCAACCTCGTCGAGGTTCCAAAGATCGTGACAGTATTTAAG 766
Query 810 GTTAACAAAACCTTGGAGCAAGGAGTTACTGATGTTCTCTACAAATGGCAGCTTGT-GTC 868
||||||||||| ||||| ||||||| ||||||||||| ||||| ||||||||||| | |
Sbjct 767 GTTAACAAAACATTGGAACAAGGAGGCACTGATGTTCTTTACAAGTGGCAGCTTGTCG-C 825
Query 869 GAGCAAATTGCCT-CAAGACCTTTTCTTGAGAGCAATGCCT-AAACCGGTAAATGGCGTG 926
|||||||| ||| ||| |||||| |||||||||||||| | | | ||||||
Sbjct 826 TAGCAAATTCCCTGAAAG-TCTTTTCGTGAGAGCAATGCCTCAGGTC-GCAAATGGAACA 883
Query 927 GTAC-CTAGCGAGAAAACCATCGCAGTTGTGTTCTACGCTCAGTTTTTAGGCTCAGCAA- 984
|| | |||||| |||||||| ||||| ||||| ||||||||||| || || | ||
Sbjct 884 AAACGC-GGCGAGAGAACCATCGTTGTTGTATTCTATGCTCAGTTTTT-GGGTC-G-AAC 939
Query 985 GGA-G-GCTCATGGCGATTATGAA-CAAGAATTTGCCTGAATTAGGGCTAAAACGTGAAG 1041
|| | ||| |||||||| ||||| ||| || | ||||||| |||||||||||| |||||
Sbjct 940 CGATGAGCTGATGGCGATAATGAACCAA-AACTGGCCTGAACTAGGGCTAAAACATGAAG 998
Query 1042 ATTGCT-ACGAAATGAGCTGGATTAA-TACGACAACGTTTT-GGCAGAACTATCCTGTGG 1098
|||| | | |||||||||||| |||| | |||| ||||| ||||| | ||||| | |
Sbjct 999 ATTG-TCAAGAAATGAGCTGGCTTAACT-CGACGTTGTTTTGGGCAG-ATTATCCAGCCG 1055
Query 1099 GAACATCGACAAGCGTT-TTATTGGATAGACCATCGGGTCCCGCAGGAGCA-TTCTACAA 1156
| ||| |||| ||| || || | |||||||| ||| || | |||||| | || | |||
Sbjct 1056 GTACACCGACGAGCATTCTT-CTAGATAGACCGTCGAGT--C-CAGGAG-ATTTTTTCAA 1110
Query 1157 GAGTAAATCGGATTACGTCAAGAAACCGATCCC-AAAGGAAGAAATGGAGAAGATCTGGA 1215
||| ||||||||||||||||| ||||| ||||| ||| |||| | |||||||| | |||
Sbjct 1111 GAGCAAATCGGATTACGTCAAAAAACCAATCCCTAAA-GAAGGACTGGAGAAGCTTTGG- 1168
Query 1216 AAG-CAATGTTGAAGTTCAAC---AATA---TGTGGATGCAATGGAACCCTTACGGTGGA 1268
||| |||||||||| |||||| |||| |||||||||||| ||||| |||||||||
Sbjct 1169 AAGACAATGTTGAAATTCAACAATAATATTGTGTGGATGCAATTCAACCCATACGGTGGA 1228
Query 1269 GTGATGGACAAGATTCCTGCTGA-TGCCACCGCGTTTCCTCATCGAAAAGGAAACTTGTT 1327
||||||||| ||||||||| | ||||| ||||||||||| || ||||||||||||||
Sbjct 1229 GTGATGGACCGGATTCCTGC-AACCGCCACAGCGTTTCCTCACCGGAAAGGAAACTTGTT 1287
Query 1328 CAAGATTCAGTACTTTGCGTTATGG-ACAGACGCAAACGCCACATACG-CTAATCTTG-G 1384
||||||||| |||||| || |||| | |||||||| ||||| | | | | | || |
Sbjct 1288 CAAGATTCAATACTTTACGACATGGTTTA-ACGCAAACACCACAGA-GAGT-AGCCTGAG 1344
Query 1385 TCTAATG-A-GAGATATATACCATGAGATG--GAGCCGTACGTGTCAAGTAACCCTAGAG 1440
|| |||| | ||| | | ||| | | | || || |||||||||||||||||||||||||
Sbjct 1345 TCAAATGAAGGAGCT-T-TACGA-G-GTTGCTGAACCGTACGTGTCAAGTAACCCTAGAG 1400
Query 1441 AGGCGTTCTTGAATTACAGAGATATCGATGTCGGAAGCAATCCGAGTGGTGAGACCAATC 1500
|||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 1401 AGGCCTTCTTTAATTACAGAGATATCGATGTTGGAAGCAATCCGAGTGGTGAGACAAA-C 1459
Query 1501 -TTGAAGAAGCTAAGATCTATGGATCGAAGTATTTCTTGGGGAATTTTAAGAGATTGATG 1559
|||| |||||||||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1460 GTTGATGAAGCTAAGATCTATGGATCCAAGTATTTCTTGGGGAACTTGAAGAGATTGATG 1519
Query 1560 GAAGTTAAAGCAAAGTATGATCCTGAGAATTTCTTTA-GATTCGAACAAAGTATTCCTCC 1618
|| |||||||| ||||||||||||||||||||||| | || |||||| || ||||||||
Sbjct 1520 GATGTTAAAGCTAAGTATGATCCTGAGAATTTCTTCAAGAA-CGAACAGAGCATTCCTCC 1578
Query 1619 TGCTAGTGCAATGTA 1633
| | ||| ||||||
Sbjct 1579 GGTTCGTGTAATGTA 1593
> Ahg472778 jgi|Araly1|472778|fgenesh2_kg.1__2732__AT1G26420.1
Length=1587
Score = 1013 bits (548), Expect = 0.0
Identities = 1291/1637 (79%), Gaps = 102/1637 (6%)
Strand=Plus/Plus
Query 48 ATGAAAGAAGTAGTTTATGTTCTGCT-ACTTGTTCTTCTT-GTTTCGGTTTCAGATGCA- 104
|||||||||| ||| |||| || | ||||||||| || |||||||||| ||| |||
Sbjct 1 ATGAAAGAAGCCCTTTCTGTTTTG-TGTCTTGTTCTT-TTGGTTTCGGTTTTAGAAGCAG 58
Query 105 AATGAAACGAAACC-AAATATTGAAAACTTCCTCCG-ATGCCTTCG-TAATCGGACCAA- 160
| | ||||||||| |||| ||| ||||| | || ||||||||| | |||| | |||
Sbjct 59 CA-GTAACGAAACCAAAAT-TTGGGGACTTCAT-CGAATGCCTTCGCT-ATCGTA-CAAG 113
Query 161 TCCGAAGAATCCGATCGCCGAA-GCCATCT--ATAC-TC-ATGAGAACTCCACCTTCGCG 215
| || ||||||| ||| || || ||| ||| || | | || | | | |||||||| |
Sbjct 114 TTCGGAGAATCCAATCACC-AATGCCCTCTCCAT-CGCCGATAACACCACCACCTTCTTG 171
Query 216 TCTTCTTACGTGTCCTACACGAATAACA-AACGGTGTTTAAACCCTAACGACACAAAACT 274
||||||||| ||||||||||||| |||| | ||| | || ||||||| || ||||||
Sbjct 172 TCTTCTTACTTGTCCTACACGAAAAACAGGA-GGTACTCAAGCCCTAACTTCAAAAAACT 230
Query 275 AATCGCCATTGTTGCTGCAAAACATGAATCTCATGTTCAAGCAACTGTGGTTTGCGCAAA 334
| | || || || || || ||||||| |||||||||||| || || ||||| ||||||||
Sbjct 231 ACTAGCTATCGTAGCGGCGAAACATGTATCTCATGTTCAGGCCACAGTGGTCTGCGCAAA 290
Query 335 GTCAAACGGAATCCAGA-TCCGTATCCGAAGCGGCGGTCACGA-CTACGAGGGACTTTCT 392
| | ||||| || || | | |||||||||||||||||||| || || ||| || ||||||
Sbjct 291 GACCAACGGTATACA-ACTGCGTATCCGAAGCGGCGGTCATGACCT-CGAAGGCCTTTCT 348
Query 393 TTCACCTCCTCCGTTCCGTTTGTTATCCTTGACATGCACGATCTCCGGTCTATAACCATT 452
| || || || || || ||||| || || |||||| | ||||| | ||||| || ||
Sbjct 349 TACAGGTCGTCTGTGCCATTTGTCATTCTCGACATGTTCAATCTCAGATCTATTACTGTT 408
Query 453 GACGTGTTC-AGAAAGCAAGCTTGGGTTGATGCTGGTGCGACCATGGGAGAGCTCTACAC 511
||||| || || ||| |||| |||||| | |||||||| ||| ||||||||||||||
Sbjct 409 GACGT-ATCGAGCAAGAAAGCATGGGTTCAAGCTGGTGCAACCTTGGGAGAGCTCTACGT 467
Query 512 CAAGATCGCA-GCGGCTAGCAAAACCCTAGCATTTGCGGGTGGCGTTTGCCCTACATTAG 570
|||||| | | ||| ||| |||| ||||||||| | | ||||||||||||||| |||
Sbjct 468 AAAGATC-AATGAGGCAAGCCAAACGCTAGCATTTCCAGCTGGCGTTTGCCCTACGGTAG 526
Query 571 GAGCT-GGAGGACACATCAGTGGCGGAGGATACGGAAATCTGATAAGAAAGTACGGAATC 629
||| | ||||| ||||| || || ||||| || ||||||||||| ||||| | ||||||
Sbjct 527 GAG-TAGGAGGGCACATTAGCGGTGGAGGGTATGGAAATCTGATGAGAAAATTCGGAAT- 584
Query 630 T-CGGTCGATCATGTGGTTGATGCTCGAA-TAGTTGATGTCAACGGCAATATCTTGACA- 686
| | || |||||||| ||||||||| || || |||||||||||||||| |||| | |
Sbjct 585 TACAGTGGATCATGTCATTGATGCTC-AATTAATTGATGTCAACGGCAAGCTCTT-AAAT 642
Query 687 GGAGCTACCTTGGGACG-TGATCTATTGTGGGCTATTCGAGGCGGTGGGGGCGCTAGCTT 745
|||||||| ||||| | ||||| || ||||| ||||||||||| || || || || ||
Sbjct 643 CGAGCTACCATGGGA-GAAGATCTCTTTTGGGCCATTCGAGGCGGCGGTGGTGCGAGTTT 701
Query 746 TGGCGTTATCCTCTCGTGGAAAATCAACCTCGTCGATGTTCCAAAGA-CCGTGACTGTTT 804
||| ||||||||||| |||||||||||||||||||| |||||||||| || |||| ||||
Sbjct 702 TGGAGTTATCCTCTCTTGGAAAATCAACCTCGTCGAAGTTCCAAAGATCC-TGACAGTTT 760
Query 805 TTAAGGTTAACAAAACCTTGGAGCAAGGAGTTACTGATGTTCTCTACAAATGGCAGCTTG 864
|||||||||| ||||| ||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct 761 TTAAGGTTAATAAAACATTGGAACAAGGAGGCACTGATGTTCTCTACAAGTGGCAGCTTG 820
Query 865 T-GTCGAGCAAATTGCCTCAAGACCTTTTCT-TGAGAGCAAT-GCCT-AAACCGGTAAAT 920
| | | | |||||| ||| | || ||||| | ||||||| || |||| | | | ||||||
Sbjct 821 TCG-CTACCAAATTCCCTGATGATCTTTT-TATGAGAGC-ATGGCCTCAGATC-GTAAAT 876
Query 921 GGCGTGGTACCTAGCGAGAAAACCATCGCAGTTGTGTTCTACGCTCAGTTTTTAGGCT-C 979
|| | || | |||||| ||||||||||||||| ||||| |||||||| || || | |
Sbjct 877 GGAACAGAACGTGGCGAGAGAACCATCGCAGTTGTATTCTATGCTCAGTTCTT-GGGTCC 935
Query 980 AGCAAG-GAGGCTCATGGCGATTATGAACAAGA-ATTTGCCTGAATTAGGGCTAAAACGT 1037
||| | | ||| |||||||| |||||| ||| | ||||||||||||||||||||||||
Sbjct 936 AGC-TGATAAGCTGATGGCGATAATGAACCAGAGA-TTGCCTGAATTAGGGCTAAAACGT 993
Query 1038 GAAGATTG-CTACGAAATGAGCTGGATTAATACGACAACGTTTTGG-CAGAACTATCCTG 1095
|||||||| | |||||||||||||| |||| |||||| ||||||| | || || || |
Sbjct 994 GAAGATTGTC-ACGAAATGAGCTGGTTTAACACGACATTGTTTTGGGCTGAT-TACCCGG 1051
Query 1096 TGGGAACATCGACA-AGCGTT-TTATTGGATAGACC-ATCGGGTCCCGCAGGAGCATTCT 1152
|||||||| ||| | |||||| || | | |||| || | || ||| |||| ||||
Sbjct 1052 TGGGAACACCGA-AGAGCGTTCTTCTAG-ATAGGCCGA-CGAATCC---AGGA---TTCT 1102
Query 1153 ACAAGAGTAAATCGGATTACGTCAAGAA-ACCGATCCCAAAGGAAGAAATGGAGAAGATC 1211
||||| ||||| |||||||| || || ||| |||||||| |||| | | |||||| |
Sbjct 1103 TTAAGAGCAAATCAGATTACGTTAA-AACACCAATCCCAAAAGAAGGACTAGAGAAGCTT 1161
Query 1212 TGGAA-AGCAATGTTGAAGTTCAACAATAT-GTG-G-ATGCAATGGAACCCTTACGGTGG 1267
||||| | ||||||| || ||||||||||| ||| | ||||||| || ||||||||||
Sbjct 1162 TGGAAGA-CAATGTTTAAATTCAACAATATTGTGTGGATGCAATTCAATGCTTACGGTGG 1220
Query 1268 AGTGATGGACAAGATTCCTGCTGA-TGCCACCGCGTTTCCTCATCGAAAAGGAAACTTGT 1326
|||||||||| ||||||| | | |||||| |||||||||||||| ||||||||| |||
Sbjct 1221 AGTGATGGACCGGATTCCTACA-ACTGCCACAGCGTTTCCTCATCGTAAAGGAAACATGT 1279
Query 1327 TCAAGATTCAGTACTTTGCGTTATGGACAGACGCAAACGCCACATACG-CTAATCTTGGT 1385
||||| |||| |||| | || ||| || |||||||||||| | | ||| || ||
Sbjct 1280 TCAAGGTTCAATACTCTACGACGTGGTTGGATGCAAACGCCACAGA-GACTAGCCTAAGT 1338
Query 1386 CTAATGA-G-AGATATATACCATGAGATG-G-AGCCGTACGTGTCAAGTAACCCTAGAGA 1441
| |||| | || | | ||| | | | || | | |||||||||||||||||||| |||||
Sbjct 1339 ATGATGAAGGAGCT-T-TACGA-G-GTTGCGGAACCGTACGTGTCAAGTAACCCAAGAGA 1394
Query 1442 GGCGTTCTTGAATTACAGAGATATCGATGTCGGAAGCAATCCGAGTGGTGAGACCA-ATC 1500
||| ||||| ||||||||||| |||||| | ||||||||||| ||| ||||||| | | |
Sbjct 1395 GGCCTTCTTTAATTACAGAGACATCGATATTGGAAGCAATCCAAGTAGTGAGAC-AGA-C 1452
Query 1501 TT-GAAGAAGCTAAGATCTATGGAT-CGAAGTATTTCTTGGGGAATTTTAAGAGATTGAT 1558
| || || |||||||||||||||| | |||||||||||||||||||| |||||| ||||
Sbjct 1453 GTAGATGAGGCTAAGATCTATGGATAC-AAGTATTTCTTGGGGAATTTGAAGAGACTGAT 1511
Query 1559 GGAAGTTAAAGCAAAGTATGATCCTGAGAATTTCTTT-A-GATTCGAACAAAGTATTCCT 1616
| |||| ||||| |||| ||||||||||||||| ||| | || ||| || |||||||||
Sbjct 1512 GCAAGTCAAAGCTAAGTGTGATCCTGAGAATTT-TTTCAAGAA-CGAGCAGAGTATTCCT 1569
Query 1617 CCTGCTAGTGCAATGTA 1633
|||| | ||| ||||||
Sbjct 1570 CCTGTTCGTGTAATGTA 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63877340865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5