BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20820.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946113 jgi|Araly1|946113|scaffold_702342.1 2377 0.0
Ahg936862 jgi|Araly1|936862|scaffold_501053.1 239 5e-62
Ahg922140 jgi|Araly1|922140|scaffold_103421.1 65.8 1e-09
> Ahg946113 jgi|Araly1|946113|scaffold_702342.1
Length=1644
Score = 2377 bits (1287), Expect = 0.0
Identities = 1505/1609 (94%), Gaps = 20/1609 (1%)
Strand=Plus/Plus
Query 1 ATGAAATTCCAAAGCTTCTTTAGCTCTGT-TCTGATCTTCTTCACTACTAGTACTTTACT 59
|||||| |||||||| ||||||||| ||| | ||||||||| |||||| | ||| |||||
Sbjct 26 ATGAAACTCCAAAGCCTCTTTAGCTATGTAT-TGATCTTCTCCACTACCATTACCTTACT 84
Query 60 TCTATCAA-TTCCTCATCCGGTTTCAGCTAACCGGTCTAATCAATCCAGTTTCCTCCAAT 118
|||||||| || ||||||||||||||||||||||| | |||||| || ||||||||||||
Sbjct 85 TCTATCAAGTT-CTCATCCGGTTTCAGCTAACCGGACCAATCAAGCCGGTTTCCTCCAAT 143
Query 119 GTCTATCTCTCCAGTTAAACGACTCCAACATCGTCTCAAAAGTCATACACACACCAAACG 178
|||| ||||||| ||| |||||||| | |||||| |||| ||||||||||||||||||||
Sbjct 144 GTCTCTCTCTCCGGTTTAACGACTCTACCATCGTTTCAAGAGTCATACACACACCAAACG 203
Query 179 ACACTTCTTTCTCCTCAGTCTTAGCTTCATCAATACAAAATCAAAGATTCTCTGCTCCTG 238
|||||||||||||||| |||||||| ||||||||||| |||| |||||||||||||||||
Sbjct 204 ACACTTCTTTCTCCTCTGTCTTAGCGTCATCAATACAGAATCCAAGATTCTCTGCTCCTG 263
Query 239 ATGTACCTAAACCGGTTTTAATCCTAACTCCGGTTCAACCTTCTGATGTTCAATCAGCGG 298
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 264 ATACACCTAAACCGGTTTTAATCCTAACTCCGGTTCAACCTTCCGATGTTCAATCAGCGG 323
Query 299 TTAAATGCGCACGCCGGTTCGGTATCCACATCAGAACCCGAAGCGGAGGACACGACTACG 358
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 324 TTAAATGCGCACGCCGGTTCGATATCCACATCAGAACCCGAAGCGGAGGACACGATTACG 383
Query 359 AAGGCCTCTCTTACGTTACACACAAACCCTTCGTAATCCTCGATTTAAGAAACCTCCGGT 418
|||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 384 AAGGACTCTCTTACGTTACCCGCAAACCCTTCGTAATCCTCGATTTAAGAAACCTCCGGT 443
Query 419 CTATCACAGTTGACGTCGATAACCGGTCGGTTTGGGTCCAAACCGGAGCCACGATCGGTG 478
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CTATCACAATTGACGTCGATAACCGGTCGGTTTGGGTCCAAACCGGAGCCACGATCGGTG 503
Query 479 AACTATAT-TACGAAATCGGTAAAAAGAATCGTACTTTAGCGTTTCCCGCCGGAGTTTGC 537
|||||| | | ||||||||| ||||||||||| ||||||||||| |||||||| ||||||
Sbjct 504 AACTAT-TCTGCGAAATCGGCAAAAAGAATCGAACTTTAGCGTTCCCCGCCGGTGTTTGC 562
Query 538 CCCACCGTCGGCGTCGGAGGACATTTTAGCGGCGGAGGATACGGTACTTTACTGAGAAAA 597
|||||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 563 CCCACCGTAGGCGTCGGAGGACACTTCAGCGGCGGAGGCTACGGTACTTTACTGAGAAAA 622
Query 598 CACGGTTTAGCAGCTGATCACGTGATAGACGCACGTGTTGTCGACGCAAGAGGAAGGATT 657
||||||| ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 623 TACGGTTTGGCAGCCGATCACGTGATAGACGCACGTGTTGTCGATGCACGAGGGAGGATT 682
Query 658 CTTGAGAGACGAGAGATGGGTGAAGATTTCTTCTGGGCGATTCGTGGAGGTGGTGGATCA 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 CTTGAAAGACGAGAGATGGGTGAAGATTTCTTCTGGGCGATTCGTGGAGGTGGTGGATCA 742
Query 718 AGCTTTTGCGTTGTTCTTTCATGGAAGATCGGTTTAATCAATGTTCCATCAACAGTAACT 777
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 AGCTTTTGCGTTGTACTTTCATGGAAGATCGGTTTAATCAATGTTCCATCAACAGTAACT 802
Query 778 GTCTTCAACGTCACGAAATTCTCAGAACAGAGTGCTTTAAAGATCATTCATCGTTGGCAA 837
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 803 GTCTTCAACGTCACGAAATTCTCAGAACAGAGTTCTTTAAAGATCATTCATCGTTGGCAA 862
Query 838 TTCGTGGCTGATAAAGTCTCTGATGATTTATTCATAAGAGTTATGTTGCAGAGATACAAG 897
|| ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 863 TTTGTGTCTGATAGAGTCTCTGATGATTTATTCATACGAGTTATGTTGCAGAGATACAAG 922
Query 898 AACATGGTTCGAGCTTCGTTTCCGGGTTTGTATCTTGGTTCGGTTAAGAATCTGTTGAAA 957
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 923 AACATGGTTCGAGCTTCGTTTCCGGGTTTGTATCTTGGTTCGGTTAACAATCTGTTGAAA 982
Query 958 ATGGTAAACAAAGAATTTCCTGAATTGGGTTTGGAGGAAGATGATTGTAC-AGAGATGAG 1016
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 983 ATGGTAAACCGGGAATTTCCTGAATTGGGTTTGGAGGAAGATGATTGT-CAAGAGATGAG 1041
Query 1017 TTGGATTGAGTCAGTAATTTGGTTTGCTGAGTTAGGAGAAGAACCAATCAATGTTCTTAC 1076
|||||||||||| || |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1042 TTGGATTGAGTCTGTGGTTTGGTTTGCTGAGTTAGGAGAAGAACCGATCGATGTTCTTAG 1101
Query 1077 TAAACGTACACGAGCATCGTTGGCTTTCAAGGCTAAATCTGATTTTGTTCAAGAACCGA- 1135
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1102 TAAACGTACACGAGCGTCGTTAGCTTTCAAGGCTAAATCTGATTTTGTTCAAGAACC-AC 1160
Query 1136 TGCCTAAAACCGCGATTTCGAAGCTT-TGGAGACGGTTGCAAGAACCGGAAGCAGAGCAT 1194
||||| ||||||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1161 TGCCTGAAACCGCGATTTC-AAATTTGTGGAGACGGTTGCAAGAACCGGAAGCAGAGCAT 1219
Query 1195 GCTCAGCTAATTTTCACTCCATTTGGTGGTAAAATGAGTGAGATTGCAGATTACGAAACA 1254
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1220 GCTCAGCTAATTTTCACTCCATTTGGTGGTAAAATGAGTGAGATTGCGGATTACGAGACG 1279
Query 1255 CCATTTCCGCATAGGAAGGGGAATATATAT-GAGATTCAGTACT-TGAATTACTGGAGAG 1312
|||||||||||| | ||||||||||||| | ||||||||||| | |||||||||||||||
Sbjct 1280 CCATTTCCGCATCGAAAGGGGAATATAT-TCGAGATTCAGTA-TCTGAATTACTGGAGAG 1337
Query 1313 GAGACGTGAAAGAGAAGTATATGAGATGGGTGGAGAGAGTTTACGATGATATGAGTGAGT 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GAGACGTGAAAGAGAAGTATATGAGATGGGTGGAGAGAGTTTACGATGATATGAGTGAGT 1397
Query 1373 TTGTGGCGAAGT-CTCCGAGAGGAGCTTATATAAATCTGAGAGATCTTGATTTGGGAATG 1431
||||||||| || ||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1398 TTGTGGCGA-GTTCTCCGAGAGGAGCTTATATAAATCTCAGAGATCTTGATTTGGGGATG 1456
Query 1432 TATGTTGGAGTTAAGAGGAGTAAGTACGAGGAAGGGAAGAGTTGGGGAGTGAAGTATTTT 1491
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1457 TATGTTGGAGGTAAGAGGAGTAAGTACGAGGAAGGAAAGAGTTGGGGAGTGAAGTATTTT 1516
Query 1492 AA-GAATAATTTTGAGAGATTGGTGAGAGTTAAGACAAGTGTTGATCCTTCTGATTTCTT 1550
|| | |||||| |||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1517 AAAGG-TAATTTCGAGAGATTGGTGAGGGTTAAGACAAGTGTTGATCCTTTTGATTTCTT 1575
Query 1551 CTGTGATGAACAGAGTATTCCTCCTTTTACGTTTGTTGAAGTTATTTGA 1599
||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1576 CTGTGATGAACAGAGTATTCCTCCTTTTAAATCTGTTGAAGTTATTTGA 1624
> Ahg936862 jgi|Araly1|936862|scaffold_501053.1
Length=251
Score = 239 bits (129), Expect = 5e-62
Identities = 194/224 (87%), Gaps = 10/224 (4%)
Strand=Plus/Plus
Query 1 ATGAAATTCCAAAGCTTCTTTAG-CTCTG--TT-CTGATCTTCTTCACTACTAGTACTTT 56
|||||| ||||||||||| || | ||||| || ||||||||||| |||| | ||| ||
Sbjct 28 ATGAAACTCCAAAGCTTCCTT-GCCTCTGTATTGATGATCTTCTTCCCTACCATTACCTT 86
Query 57 ACTTCTATCAAT-TCCTCATCCGGTTTCAGCTAACCGGTCTAATCAA-TCCAGTTTCCTC 114
|||||||||||| | |||||||||||||||||||||| || ||| || || ||||||||
Sbjct 87 ACTTCTATCAATAT-CTCATCCGGTTTCAGCTAACCGATCCAAT-AACGCCGGTTTCCTC 144
Query 115 CAATGTCTATCTCTCCAGTTAAACGACTCCAACATCGTCTCAAAAGTCATACACACACCA 174
|||||||| ||| | | ||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 145 CAATGTCTCTCTTTTCGGTTTAACGACTCTAACATCGTC-CAAAAGTCATACACACACCA 203
Query 175 AACGACACTTCTTTCTCCTCAGTCTTAGCTTCATCAATACAAAA 218
|||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 204 AACGACACTTATTTATCCTCTGTCTTAGCTTCATCAATACAAAA 247
> Ahg922140 jgi|Araly1|922140|scaffold_103421.1
Length=1622
Score = 65.8 bits (35), Expect = 1e-09
Identities = 46/51 (90%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 547 GGCGTCGGAGGACATTTTAGCGGCGGAGGATACGGTACTTT-ACTGAGAAA 596
|||||||| |||||||||||||||||||||||||||| | | | |||||||
Sbjct 546 GGCGTCGGTGGACATTTTAGCGGCGGAGGATACGGTAATCTGA-TGAGAAA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5