BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20830.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492803 jgi|Araly1|492803|fgenesh2_kg.7__2236__AT4G20830.1 2887 0.0
Ahg492802 jgi|Araly1|492802|fgenesh2_kg.7__2235__AT4G20840.1 1923 0.0
Ahg470076 jgi|Araly1|470076|fgenesh2_kg.1__30__AT1G01980.1 185 9e-46
> Ahg492803 jgi|Araly1|492803|fgenesh2_kg.7__2236__AT4G20830.1
Length=1951
Score = 2887 bits (1563), Expect = 0.0
Identities = 1806/1918 (94%), Gaps = 37/1918 (2%)
Strand=Plus/Plus
Query 30 CAAAATGCTCACGACACCTCCACGAAcctttgtctctgtccctttcttcttcttcttcct 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 46 CAAAATGCTCACGACACCTCCACGAACCTTTGTCTCTGTCCCTTTCTTCTTCTTCCTCCT 105
Query 90 cctcttc-ct-t---tctct-a-c-ctctct----catct--ttctctcAATCGAACTCT 135
| ||||| || | ||||| | | |||||| ||||| ||| ||| |||| ||||
Sbjct 106 CTTCTTCTCTCTACCTCTCTCATCTCTCTCTCAACCATCTCCTTC-CTC-GTCGAGCTCT 163
Query 136 GTATACAACTCTTTCCTCAAGTGTTTCTCCGACAAGACGAAATCTCCACAATCCCAAATC 195
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 164 GTATACAACTCTTTCCTCAAATGTTTCTCCGACAAGACGAAATCTCCACAAACCCAAATC 223
Query 196 ACTGACAATGTCTTCTCTCAGA-CAAACCCTGCTTTCTCCTCCGTTCTTCGTGCTTACAT 254
|||||||||||||||||||||| | || ||| ||||||||||||| || |||||||||||
Sbjct 224 ACTGACAATGTCTTCTCTCAGAGC-AATCCTTCTTTCTCCTCCGTCCTCCGTGCTTACAT 282
Query 255 CCGCAATGCGAGGTTCAACACTTCCTCTACTCTTAAACCCACCATCATAATCACTCCTCG 314
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 283 CCGCAATGCGAGGTTCAACACTTCATCTACTCCAAAACCCACCATCATAATCACTCCTCG 342
Query 315 CTCCGAGAGCCACGTCAGCGCCGCCGTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAA 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTCCGAGAGCCACGTCAGCGCCGCCGTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAA 402
Query 375 AATCCGAAGCGGCGGCCATGACTACGATGGTCTCTCTTACATTTCCGACAAACCATTTTT 434
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 403 AATCCGAAGCGGCGGTCATGATTACGATGGTCTCTCTTACATTTCCGATAAACCCTTTTT 462
Query 435 CATCCTCGACATGTCGAATATCCGTGACGTCTCTGTAGATATCGCCTCGAATTCGGCATG 494
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 463 CATCCTCGACATGTCGAATATCCGTGATGTCTCTGTAGATATCGCCTCGAATTCGGCTTG 522
Query 495 GATCTCCGCCGGAGCGACTCTCGGAGAGGTTTATTATCGGATTTGGGAGAAAAGCAGAGT 554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 523 GATCTCCGCCGGAGCGACTCTCGGAGAGGTTTATTATCGGATTTGGGAGAAAAGCAAAGT 582
Query 555 CCATGGATTCCCCGCCGGAGTTTGTCCGACGGTTGGTGTTGGTGGGCATTTAAGCGGCGG 614
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 583 CCATGGATTCCCTGCCGGAGTTTGTCCGACGGTTGGTGTTGGTGGCCATTTAAGCGGCGG 642
Query 615 TGGTTACGGTAACATGGTGAGGAAGTTTGGATTATCTGTGGATTACGTTGAGGATGCCAA 674
|||||||||||||||| |||| || || ||||||||||||||||||||||||||||| ||
Sbjct 643 TGGTTACGGTAACATGTTGAGAAAATTCGGATTATCTGTGGATTACGTTGAGGATGCGAA 702
Query 675 GATCGTCGATGTAAACGGTCGGGTTTTAGATCGGAAAGCAATGGGTGAGGATCTTTTCTG 734
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 703 GATCGTCGATGTAAACGGTCGGGTTTTAGATCGGAAATCAATGGGTGAGGATCTTTTCTG 762
Query 735 GGCGATTACCGGTGGAGGAGGAGGTAGCTACGGCGTCGTTTTGGGATACAAAGTCAAGCT 794
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 763 GGCGATTACCGGTGGAGGAGGAGGTAGCTACGGCGTCGTTTTGGGATACAAGGTCAAGCT 822
Query 795 TGTTCCTGTGCCATCGGTCGTTACGGTGTTTAGAGTGGAGCAGTATATGGATTCAGGAGC 854
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 823 TGTTCCTGTGCCATCGATCGTTACGGTTTTTAGAGTGGAGCAGTATATGGATTCAGGAGC 882
Query 855 TGTGGATATGGTTCACAAATGGCAATCGGTTGGTCCGAAAACTGATCC-GAATCTGTTTA 913
||||||||||||| | |||||||||||||||||||||||||| || || |||||||||||
Sbjct 883 TGTGGATATGGTTTATAAATGGCAATCGGTTGGTCCGAAAACCGA-CCGGAATCTGTTTA 941
Query 914 TGAGAATGTTGATTCAACCAGTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTTCTGTGG 973
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 942 TGAGAATGTTGATTCAACCAGTTACGAGGAAGAAGGTGAAGACTGTGAGAGCTTCTGTGG 1001
Query 974 TTGCTCTGTTTTTAGGCAGAGCAGATGA-AGTTGTTGCTTTGCTTAGTAAGGAGTTTCCT 1032
|||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 1002 TTGCTCTGTTTTTAGGCAGAGCAGAT-ACAGTTGTTGCTTTGCTTCGTAAGGAGTTTCCT 1060
Query 1033 GAATTGGGTTTAAAGAAGGAGAATTGTTCGGAGATGACTTGGTTTCAGTCTGCTTTATGG 1092
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1061 GAATTGGGTTTAAAGAAGGAGAATTGTACGGAGATGACTTGGTTTCAGTCTGCTTTATGG 1120
Query 1093 TGGGACAATCGTCTTAATGCTACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTC 1152
||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TGGGATAATCGTGTTAACGCTACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTT 1180
Query 1153 GATACCTCGAGTTTCGGTAAGAGGAAATCGGATTACGTCGCGACTGCGATTCCGAAGAAA 1212
||||| |||||||||| |||||||||||||| || ||||||||||||||||| | ||||
Sbjct 1181 GATACAGCGAGTTTCGGGAAGAGGAAATCGGACTATGTCGCGACTGCGATTCCTAGGAAA 1240
Query 1213 GGGATTGAGTCTTTGTTCAAGAAGATGATTGAGTTAGGGAAAATCGGGCTTGTTTTCAAT 1272
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1241 GGTATTGAGTCTTTGTTCAAGAAGATGATCGAGTTAGGGAAAATCGGGCTTGTTTTCAAT 1300
Query 1273 CCGTATGGAGGGAAAATGGCGGAGGTTGCGGTTAACGCGAAGCCGTTTCCACATCGAAAC 1332
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 1301 CCGTATGGAGGGAAAATGGCGGAGGTTGCGGTTAACGCGACGCCATTTCCTCATCGAAAC 1360
Query 1333 AAGCTTTTCAAGATTCAGTACTCTGTGAACTGGAAAGAAAACTCTGCAGAGATAGAGAAG 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 AAGCTTTTCAAGATTCAGTACTCTGTGAACTGGAAAGAAAACTCTGCAGAGATAGAGAAG 1420
Query 1393 GGGTACTTGAATCAGGCTAAGGTGCTTTACAGTTTCATGACCGGGTTTGTGAGCAAGAAT 1452
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1421 GGGTACTTGAATCAGGCTAAGGTGCTTTACAGTTTCATGACCGGTTTTGTGAGCAAGAAC 1480
Query 1453 CCTAGGAGTTCTTACTTCAATTACCGGGATGTCGATATCGGTGTGAATGATCATGGGGCG 1512
||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1481 CCTAGGAGTGCGTACTTCAATTACCGGGATGTGGATATCGGTGTGAATGATCATGGGGTG 1540
Query 1513 AATAGTTACAAGGAAGGAGAGGTGTATGGAAGGAAGTATTTCGGAGAGAATTTCGATCGA 1572
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1541 AATAGTTACAAGGAAGGAGAGGTGTATGGAAAGAAGTATTTTGGAGAGAATTTCGATCGA 1600
Query 1573 TTAGTGAAGATTAAAACCGCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATA 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 TTAGTGAAGATTAAAACCGCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATA 1660
Query 1633 CCTACCTTGAAAAATG-AGAAGGGAATGTTGTTGCCTGAGCCGGGAAAGGCCAGACGGTG 1691
|||||||||||||||| | ||||||| |||||||||||||||||||||||| | ||||||
Sbjct 1661 CCTACCTTGAAAAATGCA-AAGGGAACGTTGTTGCCTGAGCCGGGAAAGGCGAAACGGTG 1719
Query 1692 GTCACGAGTTGGAGGAGCCACCGTAGTTGCGACGGTGGTCTTACATGTCTTCTAGAATCT 1751
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 GTCACGAGCTGGAGGAGCCACCGTAGTTGCGACGGTGGTCTTACATGTCTTCTAGAATCT 1779
Query 1752 TAAGATTGCTTTTTGTATTGTTTTGTTTTGAATGGTTGAGTGATGATATCTCTTCATAAG 1811
| |||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1780 TGAGATTG-TTTTT-T---GTTTTGTTTTGAATTGTTGAGTGATGATATCTCTTCATAAG 1834
Query 1812 ATGAACAGAGTCTCACTCTTTTAGATCTTTCCAA-T---CTGAAGT--T-GCGAGAGTTT 1864
|||||||||| |||||||||| ||||||||| || | ||||||| | || || ||||
Sbjct 1835 ATGAACAGAGCCTCACTCTTTCAGATCTTTCTAAGTTATCTGAAGTAGTTGCAAGTGTTT 1894
Query 1865 TTAAAGGTTCGAGATTTGCATTAGAAACAGAGCATACAATGAATTGTTAGTCAGTGGG 1922
||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1895 TTAAAGGTT-GAGATTTGCATTAGAAACAGAGCATACAATGAAGTGTTAGTGAGTGGG 1951
> Ahg492802 jgi|Araly1|492802|fgenesh2_kg.7__2235__AT4G20840.1
Length=1620
Score = 1923 bits (1041), Expect = 0.0
Identities = 1426/1610 (89%), Gaps = 33/1610 (2%)
Strand=Plus/Plus
Query 50 CACGAAcctttgtctctgtccctttcttct-tcttcttcc---t-cctcttcctttctct 104
||| ||| ||||||||||||| |||||| | || |||||| | |||| ||||||||
Sbjct 11 CACAAACATTTGTCTCTGTCCTTTTCTT-TGTCCTCTTCCTTATATCTCTCCCTTTCTCC 69
Query 105 ac-ctctct-catctttctc-tcAATCGAACTCTGTATAC-AACT-CTTTCCTCAAGTGT 159
|| || || || | || | || ||| ||||| | ||| || | |||| |||| |||
Sbjct 70 ACATTCGCTGCA-C-CTC-CGTC-GTCGGACTCTATCTACGAA-TCCTTTGTTCAA-TGT 123
Query 160 TTCTCCGACAAGACGAAATCTCCACAATCCCAAATCACTGACAATGTCTTCTCTCAGACA 219
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 124 TTCTCTGACAAGACGAAATCTCCACAAACCCAAATCACTGACAATGTCTTCTCTCAGACA 183
Query 220 AACCCTGCTTTCTCCTCCGTTCTTCGTGCTTACATCCGCAATGCGAGGTTCAACACTTCC 279
|||||| ||||||||||||| |||||||||||||| || |||| |||||||||||||||
Sbjct 184 AACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGGAGGTTCAACACTTCA 243
Query 280 TCTACTCTTAAACCCACCATCATAATCACTCCTCGCTCCGAGAGCCACGTCAGCGCCGCC 339
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 244 TCTACTCCAAAACCCACTATCATCGTCACTCCTCGCTCCGAGAGCCACGTCAGCGCCGCC 303
Query 340 GTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAAAATCCGAAGCGGCGGCCATGACTAC 399
||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||
Sbjct 304 GTCACTTGCTCAAAAACACTAAATTTCCTCCTCAAAATCCGAAGTGGTGGCCATGATTAC 363
Query 400 GATGGTCTCTCTTACATTTCCGACAAACCATTTTTCATCCTCGACATGTCGAATATCCGT 459
|| |||||||||||||| ||||| ||||| ||||| || ||||||||||||||| |||||
Sbjct 364 GAAGGTCTCTCTTACATCTCCGATAAACCCTTTTTTATACTCGACATGTCGAATCTCCGT 423
Query 460 GACGTCTCTGTAGATATCGCC--TCGAATTCGGCATGGATCTCCGCCGGAGCGACTCTCG 517
|| |||||||| ||||||||| || ||| |||| ||||||||||||||||| |||||||
Sbjct 424 GATGTCTCTGTCGATATCGCCGATC-AAT-CGGCGTGGATCTCCGCCGGAGCAACTCTCG 481
Query 518 GAGAGGTTTATTATCGGA-TTTGGGAGAAAAGCAGAGTCCATGGATTCCCCGCCGGAGTT 576
| ||||||||||| | || ||||||||||||||| |||||||||||| ||||||||||||
Sbjct 482 GCGAGGTTTATTA-CAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCCGCCGGAGTT 540
Query 577 TGTCCGACGGTTGGTGTTGGTGGGCATTTAAGCGGCGGTGGTTACGGTAACATGGTGAGG 636
||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||
Sbjct 541 TGTCCGACGGTTGGTGTTGGTGGACATATAAGCGGCGGTGGTTACGGTAATATGTTGAGA 600
Query 637 AAGTTTGGATTATCTGTGGATTACGTTGAG-GATGCCAAGATCGTCGATGTAAACGGTCG 695
|| || |||||||| || ||| || |||| ||||| || |||||||||||||| ||||
Sbjct 601 AAATTCGGATTATCAGTTGATAAC-TTGATCGATGCGAAAATCGTCGATGTAAATGGTCA 659
Query 696 GGTTTTAGATCGGAAAGCAATGGGTGAGGATCTTTTCTGGGCGATTACCGGTGGAGGAGG 755
| ||||||| |||||||||||||||||||||||||| ||||||||| ||| || |||||
Sbjct 660 GATTTTAGACCGGAAAGCAATGGGTGAGGATCTTTTTTGGGCGATTTGCGGCGGCGGAGG 719
Query 756 AGGTAGCTACGGCGTCGTTTTGGGATACAAAGTCAAGCTTGTTCCTGTGCCATCGG-TCG 814
|| ||||| |||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 720 AGCTAGCTTTGGCGTCGTTTTGGGATACAAGGTCAAGCTCGTTCCTGTGCCAGAAACT-G 778
Query 815 TTACGGTGTTTAGAGTGGAGCAGTATATGGATTCAGGAGCTGTGGATATGGTTCACAAAT 874
||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 779 TTACGGTTTTTAGAGTGGAGAAGTATATGGATTCAGGAGCGGTGGATATGGTTCACAAAT 838
Query 875 GGCAATCGGTTGGTCCGAAAACTGATCCG-AATCTGTTTATGAGAATGTTGATTCAACCA 933
||||||| |||||||||||||| || ||| ||||||||| |||||||||||||||||| |
Sbjct 839 GGCAATCCGTTGGTCCGAAAACCGA-CCGGAATCTGTTTTTGAGAATGTTGATTCAACAA 897
Query 934 GTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTTCTGTGGTTGCTCTGTTTTTAGGCAGA 993
| ||| ||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 898 GCGACAAGGAAGAAGGTGAAGACGGTGAGAGCTACTGTGGTGGCTCTGTTTTTAGGCAGA 957
Query 994 GCAGATGAAGTTGTTGCTTTGCTTAGTAAGGAGTTTCCTGAATTGGGTTTAAAGAAGGAG 1053
||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 958 GCAGACGAAGTTGTTGCGTTGCTTCGTAAGGAGTTTCCTGAATTGGGTTTAAAGAAGGAG 1017
Query 1054 AATTGTTCGGAGATGACTTGGTTTCAGTCTGCTTTATGGTGGGACAATCGTCTTAATGCT 1113
|||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1018 AATTGTACGGAGATGTCTTGGTTTCAGTCTGCTTTATGGTGGGATAATCGTGTTAATGCT 1077
Query 1114 ACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTCGATACCTCGAGTTTCGGTAAG 1173
|||||| ||||||||||||||||||||||||||||||| |||| ||| |||||| |||
Sbjct 1078 ACTCAGATTGATCCTAAAGTGTTTCTTGATCGGAATCTTGATAGAGCGAATTTCGGGAAG 1137
Query 1174 AGGAAATCGGATTACGTCGCGACTGCGATTCCGA-AGAAAGGGATTGAGTCTTTGTTCAA 1232
||||||||||||||||| | || || |||||| | ||| ||||||||||||||||||||
Sbjct 1138 AGGAAATCGGATTACGTTGTGAGTGAGATTCCTAGAGAT-GGGATTGAGTCTTTGTTCAA 1196
Query 1233 GAAGATGATTGAGTTAGGGAAAATCGGGCTTGTTTTCAATCCGTATGGAGGGAAAATGGC 1292
||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1197 GAAGATGATTGAGTTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGGTGGGAAAATGGC 1256
Query 1293 GGAGGTTGCGGTTAACGCGAAGCCGTTTCCACATCGAAACAAGCTTTTCAAGATTCAGTA 1352
||||||| ||||| | |||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1257 GGAGGTTTCGGTTGATGCGACCCCGTTTCCGCACCGAAACAAGCTTTTCAAGATTCAGTA 1316
Query 1353 CTCTGTGAACTGGAAAGAAAACTCTG-CAGAGATAGAGAAGGGGTACTTGAATCAGGCTA 1411
||| |||| |||| |||||||||||| | |||||||||||||| | ||||||||||||||
Sbjct 1317 CTCGGTGACCTGGCAAGAAAACTCTGTC-GAGATAGAGAAGGGTTTCTTGAATCAGGCTA 1375
Query 1412 AGGTGCTTTACAGTTTCATGACCGGGTTTGTGAGCAAGAATCCTAGGAGTTCTTACTTCA 1471
| || ||||| ||||||||||||||||||||||||||||| || || | | ||||||| |
Sbjct 1376 ACGTTCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCCAGAAATGCTTACTTGA 1435
Query 1472 ATTACCGGGATGTCGATATCGGTGTGAATGATCATGGGGCGAATAGTTACAAGGAAGGAG 1531
||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 1436 ATTACCGAGATGTGGATATCGGTGTGAACGATCATGGTGCGAATAGTTATGAGGAAGGAG 1495
Query 1532 AGGTGTATGGAAGGAAGTATTTCGGAGAGAATTTCGATCGATTAGTGAAGATTAAAACCG 1591
|||||||||||||||||||||| ||||| ||||| ||||||||||| ||| |||||||||
Sbjct 1496 AGGTGTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTAAAGGTTAAAACCG 1555
Query 1592 CGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATACCTACCTTG 1641
|||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct 1556 CGGTTGATCCCGATAATTTCTTCATGAATGAACAAAGTATACCTACCTTG 1605
> Ahg470076 jgi|Araly1|470076|fgenesh2_kg.1__30__AT1G01980.1
Length=1793
Score = 185 bits (100), Expect = 9e-46
Identities = 1037/1470 (71%), Gaps = 141/1470 (10%)
Strand=Plus/Plus
Query 250 TACATCCGCAATGCGAGGTTCAACACTTCCTC-TACTCTTAAACC-CACCATCATAATCA 307
||||||||||| || | |||||||||||| | | ||| ||||| | | || | |||
Sbjct 196 TACATCCGCAACGCTCGTTTCAACACTTCCACGT-CTCCCAAACCTCTGC-TCGTTATCG 253
Query 308 CTCCTCGCTCCGAGAGCCACGT-CAGCGCCGCCGTCACT-TGCTCAAAAACCCTAAATTT 365
| | || || ||| ||||||| ||| ||| ||||| || ||| | ||| | || || ||
Sbjct 254 CGGCGCGTTCTGAGTGCCACGTCCAG-GCCACCGTC-CTCTGCACCAAATCTCTCAACTT 311
Query 366 CCTCCTCAA-AATCCGAAGCGGCGGCCATGACTACGATGGTC-TCTCTTACATTTCCGAC 423
|| ||||| | | || |||||||||||||||||||| || | | || ||||| || ||
Sbjct 312 CCAGCTCAAGACT-CGCAGCGGCGGCCATGACTACGACGG-CGTTTCCTACATCTCTAAC 369
Query 424 AAACCATTT-TTCATCCTCGACATGTCGAATATCCGTGACGTCTCTGTAGATA--T-CG- 478
|| ||| ||| ||||||||||||| | ||||| || || | || |||| | ||
Sbjct 370 -TGCCCTTTCTTCGTCCTCGACATGTCCTGTCTCCGTAACATCACCGTCGATATGTCCGA 428
Query 479 CCTC-GA-ATTCGGCATGGATCT-CCGCCGGAGCGACTCTCGGAGAGGTTTATTATC-GG 534
| | || || || ||| | | ||||| || |||||||| ||||||||||| |
Sbjct 429 CAACGGAGGCTCTGCCTGGGT-TGGAGCCGGCGCTACTCTCGGCGAGGTTTATTA-CAAC 486
Query 535 ATTT-G--G-G-AG-AAAA-GCA--G-AGTCCATGGATTCCCCGCCGGAGTTTGTCCGAC 584
|||| | | | || |||| || | | | || || || ||||||||||||||||| ||
Sbjct 487 ATTTGGCAGAGCAGCAAAACTCACGGCACT-CACGGGTTTCCCGCCGGAGTTTGTCCCAC 545
Query 585 GGTTGGTGTTGGTGGG-CA-TTTAAGCGGCGGTGGTTACGGTAACATGGTGAGGAAGT-T 641
|| || | || ||| || || |||||||| || ||||| |||||| | || ||||
Sbjct 546 CGTCGGAGCCGG-GGGTCACATT-AGCGGCGGAGGCTACGGCAACATGATCAGAAAGTAC 603
Query 642 TGGATTATCTGTGGATTACGTTGA-GGATGCCAAGATCGTCGATGTAAACGGTCGGGTTT 700
|| || || || ||||||| | | ||| ||||||||||| || || ||||| ||| ||
Sbjct 604 GGGCTT-TCCGTTGATTACG-TCACGGACGCCAAGATCGTAGACGTGAACGGACGGATTC 661
Query 701 TAGATCGGAAAGCAATGGGTGAGGATCTT-TTCTGGGCGATTACCGGTGGAGGAGGAG-G 758
| ||||| ||| | ||||| |||||| || || ||||| ||| || || || || | |
Sbjct 662 TCGATCGTAAATCGATGGGAGAGGAT-TTCTTTTGGGCAATTGGAGGCGGTGGTGGTGCG 720
Query 759 TAGCTACGGCGTCG-TTTTGGGATACAAAGTCAAGCTTGTTCCTGTGCCAT-CG-GTCGT 815
|||| |||||| | | || | |||| |||| || || ||||| || | || | ||
Sbjct 721 -AGCTTCGGCGT-GATCTTATCTTTCAAAATCAAACTCGTGCCTGTTCC-TCCGAG-GGT 776
Query 816 TACGGTGTTT-AGAGTGGAGCAGTA-TATGGATTCAGGA-GCTGTGGATATGGTTCACAA 872
|| || ||| ||||||||| | | | || | | || | || ||||| || ||
Sbjct 777 GACTGT-TTTCAGAGTGGAG-AAAACCCTCGA-GGAAAACGCACTTGACATGGTCCATAA 833
Query 873 ATGGCAATCGGTTGGTCCGAA-AACTGATCCGAATCTGTTTATGA-G--AATGTTGATTC 928
|||||| | |||| ||| || | | | ||| |||| || |||| | ||||||| |
Sbjct 834 ATGGCAGTTTGTTGCTCCCAAGACCAG-CCCGGATCTCTTCATGAGGCTAATGTTG---C 889
Query 929 AACCAGTGACGAGGAAGAAG-GTAAAGACTGTGAGAGCTTCTGTGGTTGCTCTGTTTTTA 987
| || ||||| |||| | | | ||||||| |||| || |||||||||||||| ||
Sbjct 890 AGCCGGTGACCCGGAACACGACT-CAGACTGTTCGAGCGTCGGTGGTTGCTCTGTTCTT- 947
Query 988 GGCAGAGCAGATGAAG-T-TGTTG-CTTTGCTTAGTAAGGAGTTTCCTGA-ATTGGGTTT 1043
|| | | |||| | | | | || || |||| | || ||||| || || || ||| |
Sbjct 948 GGGAAAACAGA-G-CGATCTCATGTCTCTGCTGACCAAAGAGTTCCCGGAGCTT-GGTCT 1004
Query 1044 AAAGAAGGAGAATTGTTCGGAGATGACTTGGTTTCAGTCTGCT-TTATGGTGGG---ACA 1099
||| ||||||||| |||||||||| ||| | ||||| | | | ||||||| |||
Sbjct 1005 GAAGCCGGAGAATTGCACGGAGATGACGTGGATACAGTC-GGTGATGTGGTGGGCCAACA 1063
Query 1100 ATCGTCTTAATGCTACTCAGGTTGATCCTAAAG-TGTTTCTTGATCGGAATCTC-GATAC 1157
| || | || || || || || | || || | | || || | ||| | | ||| |
Sbjct 1064 A-CGAC--AACGCCACGGAGATTAAACC-GGAGATCCTGCTGGA-CCGAAACCCGGATTC 1118
Query 1158 CTCGAGTTTCGGT-AAGAGGAAATCGGATTACGTCGCGACTGCGATTCCG-AAGAAAGGG 1215
|| |||| | || || |||||||||||||| | ||| | |||| | || | | ||
Sbjct 1119 GGCGTCTTTC-TTGAAAAGAAAATCGGATTACGTGGAGACAGAGATT-AGCAA-AGACGG 1175
Query 1216 ATTGAG-TCTT--TGTTCAAGAAGATGATTGA-GTTAGGGAAAATCGGGCTTGTTTTCAA 1271
|| || | || |||| |||||| |||| || | | ||||| | ||||||||||||||
Sbjct 1176 -TTTAGAT-TTCCTGTTTAAGAAGTTGATGGAGGCT-GGGAAGCTAGGGCTTGTTTTCAA 1232
Query 1272 TCCGTATGGAGGGAAAATG-GCGGAGGTTGCGGTTAACG-CGAAGCCGTTTCCACATC-G 1328
||||||||||||||||||| ||| || |||| || || ||| || || ||||| | |
Sbjct 1233 TCCGTATGGAGGGAAAATGAGCGAAG-TTGCTACTA-CGGCGACTCCATTCCCACA-CAG 1289
Query 1329 AAACAAGCTTTTCAAGATTCAGTACTCTG-TGAACTGGAAAGAAAA---CTCTGCAGAGA 1384
|| | |||||||||| | ||| | || | ||||||||||||| | ||| || |
Sbjct 1290 GAAGAGGCTTTTCAAGGTCCAGCATTC-GATGAACTGGAAAGACCCGGGCACTGAAGCGG 1348
Query 1385 TAGAGAAGGGGTACTTG-AATCAGG-CTAAGGTGCTT-TACAGTTTCATGAC-CGGGTTT 1440
|||| || | | || || ||| | | | |||| ||||| | |||| | | |||
Sbjct 1349 -AGAGCAGTT-T-CATGGAA--AGGACGA-GAAGCTTCTACAGCTACATGGCTCC--TTT 1400
Query 1441 -GTGAGCAAGAATCCTAGG-AGTTCTTA-CTTCAATTACCGGGATGTCGATATCGGTG-T 1496
|||| ||||||||| || | | || || ||||||| ||||| | |||||||| | |
Sbjct 1401 CGTGACCAAGAATCCAAGACACA-CGTATCT-CAATTACAGGGATCTTGATATCGG-GAT 1457
Query 1497 GAATGATC-ATGGGGCGAATAGTTACA-AGGAAGGAGAGGTGTATGGAAGGAAGTATTTC 1554
|| | | |||| |||| ||||||| || ||| ||||| || || || |||||||||
Sbjct 1458 CAAC-AGCCATGGCCCGAAAAGTTACAGAG-AAGCTGAGGTTTACGGGAGAAAGTATTTC 1515
Query 1555 GGAGAGAATTTCGATCGATTAGTGAAGATT-AAAACCGCGGTTGATCCCGGGAA-TTTCT 1612
||||||||||| ||||| || || || | | ||||| || || ||||| | || ||| |
Sbjct 1516 GGAGAGAATTTTGATCGGTTGGTCAA-AGTCAAAACAGCCGTGGATCCAGAAAACTTT-T 1573
Query 1613 TCAG-GAATGAACAGAGTATACCTACCTTG 1641
|||| || ||||||||||||||||||||||
Sbjct 1574 TCAGAGA-TGAACAGAGTATACCTACCTTG 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5