BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20840.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492802 jgi|Araly1|492802|fgenesh2_kg.7__2235__AT4G20840.1 2449 0.0
Ahg492803 jgi|Araly1|492803|fgenesh2_kg.7__2236__AT4G20830.1 1840 0.0
> Ahg492802 jgi|Araly1|492802|fgenesh2_kg.7__2235__AT4G20840.1
Length=1620
Score = 2449 bits (1326), Expect = 0.0
Identities = 1523/1621 (94%), Gaps = 2/1621 (0%)
Strand=Plus/Plus
Query 1 ATGATTGCAACACAAACctttgtctctgtctttttctttgtcttcttcctcgtatctctc 60
||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1 ATGATTGCAACACAAACATTTGTCTCTGTCCTTTTCTTTGTCCTCTTCCTTATATCTCTC 60
Query 61 cctttcttctcATCCGCAGCACCTCCGTCTTCTGATTCTATCTACGAATCATTCGTTCAA 120
||||||| | ||| ||| ||||||||||| || || |||||||||||||| || ||||||
Sbjct 61 CCTTTCTCCACATTCGCTGCACCTCCGTCGTCGGACTCTATCTACGAATCCTTTGTTCAA 120
Query 121 TGTTTCTCCGACAAGACAAAATCTCCACAAGCCCAAATCACCGACAATGTCTTCTCTCGG 180
|||||||| |||||||| |||||||||||| |||||||||| |||||||||||||||| |
Sbjct 121 TGTTTCTCTGACAAGACGAAATCTCCACAAACCCAAATCACTGACAATGTCTTCTCTCAG 180
Query 181 ACAAACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGCAGGTTCAACACT 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ACAAACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGGAGGTTCAACACT 240
Query 241 TCATCTACGCCAAAA-CCAGCTATCATCGTCACTCCTCGCTCCGATATCCACGTCAGCGC 299
|||||||| |||||| ||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 241 TCATCTACTCCAAAACCCA-CTATCATCGTCACTCCTCGCTCCGAGAGCCACGTCAGCGC 299
Query 300 CGCCGTCACTTGCTCAAAAAGTTTAAATTTCCTTCTCAAAATCCGAAGTGGTGGCCATGA 359
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 300 CGCCGTCACTTGCTCAAAAACACTAAATTTCCTCCTCAAAATCCGAAGTGGTGGCCATGA 359
Query 360 TTACGAAGGTCTCTCTTACATCTCTGATAAACCATTTTTTATACTCGACATGTCGAATCT 419
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 360 TTACGAAGGTCTCTCTTACATCTCCGATAAACCCTTTTTTATACTCGACATGTCGAATCT 419
Query 420 CCGTGATGTCTCTGTTGATATCGCCGATCAATCAGCTTGGATCTCCGCCGGAGCAACTCT 479
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 420 CCGTGATGTCTCTGTCGATATCGCCGATCAATCGGCGTGGATCTCCGCCGGAGCAACTCT 479
Query 480 TGGTGAGGTTTATTACAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCCGCCGGAGT 539
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGGCGAGGTTTATTACAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCCGCCGGAGT 539
Query 540 TTGTCCCACGGTTGGTGTTGGTGGACATATAAGCGGTGGTGGTTACGGTAATATGTTGAG 599
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 TTGTCCGACGGTTGGTGTTGGTGGACATATAAGCGGCGGTGGTTACGGTAATATGTTGAG 599
Query 600 GAAATTCGGATTATCAGTTGATAACTTGATCGATGCGAAGATCGTTGATGTTAACGGTCA 659
|||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 600 AAAATTCGGATTATCAGTTGATAACTTGATCGATGCGAAAATCGTCGATGTAAATGGTCA 659
Query 660 AATTTTAGACCGGAAATCGATGGGTGAGGATCTTTTTTGGGCTATTTCCGGTGGAGGAGG 719
||||||||||||||| | ||||||||||||||||||||||| |||| ||| || |||||
Sbjct 660 GATTTTAGACCGGAAAGCAATGGGTGAGGATCTTTTTTGGGCGATTTGCGGCGGCGGAGG 719
Query 720 GGCTAGCTTCGGCGTCGTTTTGGGTTACAAGGTCAAGCTCGTTCCTGTGCCAGAAACTGT 779
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 AGCTAGCTTTGGCGTCGTTTTGGGATACAAGGTCAAGCTCGTTCCTGTGCCAGAAACTGT 779
Query 780 TACAGTCTTTAGGGTGGAGAAGTATATGGATTCAGGAGCGGTGGATATGGTTCACAAATG 839
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TACGGTTTTTAGAGTGGAGAAGTATATGGATTCAGGAGCGGTGGATATGGTTCACAAATG 839
Query 840 GCAATCCGTTGGTCCAAAAACCGACCGGAATCTATTTTTGAGAATGTTGATTCAACCGGT 899
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
Sbjct 840 GCAATCCGTTGGTCCGAAAACCGACCGGAATCTGTTTTTGAGAATGTTGATTCAACAAGC 899
Query 900 GACGAGGAAGAAGGTAAAGACTGTGAGAGCTACTGTGGTGGCTCTGTTTTTAGGCAGAGC 959
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 GACAAGGAAGAAGGTGAAGACGGTGAGAGCTACTGTGGTGGCTCTGTTTTTAGGCAGAGC 959
Query 960 AGAGGAAGTTGTTGCTTTGCTTGGTAAGGAGTTTCCTGAATTGAGTTTAAAGAAGGAGAA 1019
||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 960 AGACGAAGTTGTTGCGTTGCTTCGTAAGGAGTTTCCTGAATTGGGTTTAAAGAAGGAGAA 1019
Query 1020 CTGTTCGGAGATGACTTGGTTTCAGTCAGCTTTATGGTGGGATAATCGTGTTAACCCTAC 1079
||| |||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1020 TTGTACGGAGATGTCTTGGTTTCAGTCTGCTTTATGGTGGGATAATCGTGTTAATGCTAC 1079
Query 1080 TCAGATTGATCCTAAAGTGTTTCTCGATCGGAATCTTGATAGAGCGAATTTCGGAAAGAG 1139
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1080 TCAGATTGATCCTAAAGTGTTTCTTGATCGGAATCTTGATAGAGCGAATTTCGGGAAGAG 1139
Query 1140 GAAATCGGATTACGTTGCGAGTGAGATTCCTAGAGATGGGATTGAGTCTTTGTTCAAGAA 1199
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAAATCGGATTACGTTGTGAGTGAGATTCCTAGAGATGGGATTGAGTCTTTGTTCAAGAA 1199
Query 1200 GATGACTGAGCTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGGTGGGAAAATGGCGGA 1259
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GATGATTGAGTTGGGGAAAATCGGGCTTGTTTTTAATCCGTATGGTGGGAAAATGGCGGA 1259
Query 1260 GGTTACGGTTAACGCGACGCCGTTTCCGCACCGAAGCAAGCTTTTTAAGATTCAGTACTC 1319
|||| ||||| | ||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1260 GGTTTCGGTTGATGCGACCCCGTTTCCGCACCGAAACAAGCTTTTCAAGATTCAGTACTC 1319
Query 1320 GGTGACTTGGCAAGAAAACTCTGTCGAGATAGAGAAGGGTTTCTTGAATCAGGCTAACGT 1379
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGTGACCTGGCAAGAAAACTCTGTCGAGATAGAGAAGGGTTTCTTGAATCAGGCTAACGT 1379
Query 1380 TCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCTAGAAATGCTTACTTGAATTA 1439
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 TCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCCAGAAATGCTTACTTGAATTA 1439
Query 1440 CCGAGATGTCGATATAGGTGTGAATGATCATGGTACGAATAGTTATGAGGAAGGAGAAGT 1499
||||||||| ||||| |||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1440 CCGAGATGTGGATATCGGTGTGAACGATCATGGTGCGAATAGTTATGAGGAAGGAGAGGT 1499
Query 1500 GTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTAAAGGTTAAAACAGCGGC 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1500 GTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGTAAAGGTTAAAACCGCGGT 1559
Query 1560 TGATCCAGATAATTTCTTCAGGAATGAACAGAGTATACCTACCGTGCTTAGCAAGGCATA 1619
|||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||
Sbjct 1560 TGATCCCGATAATTTCTTCATGAATGAACAAAGTATACCTACCTTGCTTAGCAAGGCATA 1619
Query 1620 G 1620
|
Sbjct 1620 G 1620
> Ahg492803 jgi|Araly1|492803|fgenesh2_kg.7__2236__AT4G20830.1
Length=1951
Score = 1840 bits (996), Expect = 0.0
Identities = 1421/1621 (88%), Gaps = 49/1621 (3%)
Strand=Plus/Plus
Query 11 CACAAACctttgtctctgtctttttctt-tgtcttcttcctcgt-atctctc--cct-t- 64
||| |||||||||||||||| |||||| | ||||| ||||| | |||||| ||| |
Sbjct 66 CACGAACCTTTGTCTCTGTCCCTTTCTTCT-TCTTCCTCCTCTTCTTCTCTCTACCTCTC 124
Query 65 tcttctcATC-CGC-AGCACCTCCGTCTTC-T-GA-TTCTATCTACGAA-TCATTCGTTC 118
|| |||| || | | | || |||| || || | || ||| | ||| || || ||| ||
Sbjct 125 TCATCTC-TCTCTCAACCATCTCCTTCCTCGTCGAGCTCTGTATAC-AACTCTTTC-CTC 181
Query 119 -AATGTTTCTCCGACAAGACAAAATCTCCACAAGCCCAAATCACCGACAATGTCTTCTCT 177
||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||
Sbjct 182 AAATGTTTCTCCGACAAGACGAAATCTCCACAAACCCAAATCACTGACAATGTCTTCTCT 241
Query 178 CGGA-CAAACCCTTCTTTCTCCTCCGTCCTTCGTGCTTACATTCGAAATGGC-AGGTTCA 235
| || | || |||||||||||||||||||| ||||||||||| || ||| || |||||||
Sbjct 242 CAGAGC-AATCCTTCTTTCTCCTCCGTCCTCCGTGCTTACATCCGCAAT-GCGAGGTTCA 299
Query 236 ACACTTCATCTACGCCAAAA-CCAGCTATCATCGTCACTCCTCGCTCCGATATCCACGTC 294
||||||||||||| |||||| ||| | ||||| |||||||||||||||| | |||||||
Sbjct 300 ACACTTCATCTACTCCAAAACCCA-CCATCATAATCACTCCTCGCTCCGAGAGCCACGTC 358
Query 295 AGCGCCGCCGTCACTTGCTCAAAAAGTTTAAATTTCCTTCTCAAAATCCGAAGTGGTGGC 354
||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||
Sbjct 359 AGCGCCGCCGTCACTTGCTCAAAAACCCTAAATTTCCTCCTCAAAATCCGAAGCGGCGGT 418
Query 355 CATGATTACGAAGGTCTCTCTTACATCTCTGATAAACCATTTTTTATACTCGACATGTCG 414
||||||||||| |||||||||||||| || |||||||| ||||| || ||||||||||||
Sbjct 419 CATGATTACGATGGTCTCTCTTACATTTCCGATAAACCCTTTTTCATCCTCGACATGTCG 478
Query 415 AATCTCCGTGATGTCTCTGTTGATATCGCCGATC-AAT-CAGCTTGGATCTCCGCCGGAG 472
||| |||||||||||||||| ||||||||| || ||| | |||||||||||||||||||
Sbjct 479 AATATCCGTGATGTCTCTGTAGATATCGCC--TCGAATTCGGCTTGGATCTCCGCCGGAG 536
Query 473 CAACTCTTGGTGAGGTTTATTA-CAGAATTTGGGAGAAAAGCAAAGTCCATGGATTTCCC 531
| ||||| || ||||||||||| | || |||||||||||||||||||||||||||| |||
Sbjct 537 CGACTCTCGGAGAGGTTTATTATCGGA-TTTGGGAGAAAAGCAAAGTCCATGGATT-CCC 594
Query 532 -GCCGGAGTTTGTCCCACGGTTGGTGTTGGTGGACATATAAGCGGTGGTGGTTACGGTAA 590
|||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 595 TGCCGGAGTTTGTCCGACGGTTGGTGTTGGTGGCCATTTAAGCGGCGGTGGTTACGGTAA 654
Query 591 TATGTTGAGGAAATTCGGATTATCAGTTGATAAC-TTGATCGATGCGAAGATCGTTGATG 649
|||||||| |||||||||||||| || ||| || |||| |||||||||||||| ||||
Sbjct 655 CATGTTGAGAAAATTCGGATTATCTGTGGATTACGTTGAG-GATGCGAAGATCGTCGATG 713
Query 650 TTAACGGTCAAATTTTAGACCGGAAATCGATGGGTGAGGATCTTTTTTGGGCTATTTCCG 709
| ||||||| ||||||| |||||||| ||||||||||||||||| ||||| ||| |||
Sbjct 714 TAAACGGTCGGGTTTTAGATCGGAAATCAATGGGTGAGGATCTTTTCTGGGCGATTACCG 773
Query 710 GTGGAGGAGG-GGCTAGCTTCGGCGTCGTTTTGGGTTACAAGGTCAAGCTCGTTCCTGTG 768
|||||||||| || ||||| ||||||||||||||| |||||||||||||| |||||||||
Sbjct 774 GTGGAGGAGGAGG-TAGCTACGGCGTCGTTTTGGGATACAAGGTCAAGCTTGTTCCTGTG 832
Query 769 CCA--GAAACTGTTACAGTCTTTAGGGTGGAGAAGTATATGGATTCAGGAGCGGTGGATA 826
||| || | ||||| || ||||| |||||| ||||||||||||||||||| |||||||
Sbjct 833 CCATCGAT-C-GTTACGGTTTTTAGAGTGGAGCAGTATATGGATTCAGGAGCTGTGGATA 890
Query 827 TGGTTCACAAATGGCAATCCGTTGGTCCAAAAACCGACCGGAATCTATTTTTGAGAATGT 886
||||| | ||||||||||| |||||||| ||||||||||||||||| ||| |||||||||
Sbjct 891 TGGTTTATAAATGGCAATCGGTTGGTCCGAAAACCGACCGGAATCTGTTTATGAGAATGT 950
Query 887 TGATTCAACCGGTGACGAGGAAGAAGGTAAAGACTGTGAGAGCTACTGTGGTGGCTCTGT 946
|||||||||| || |||||||||||||| ||||||||||||||| ||||||| |||||||
Sbjct 951 TGATTCAACCAGTTACGAGGAAGAAGGTGAAGACTGTGAGAGCTTCTGTGGTTGCTCTGT 1010
Query 947 TTTTAGGCAGAGCAGAGGA-AGTTGTTGCTTTGCTTGGTAAGGAGTTTCCTGAATTGAGT 1005
|||||||||||||||| | |||||||||||||||| |||||||||||||||||||| ||
Sbjct 1011 TTTTAGGCAGAGCAGAT-ACAGTTGTTGCTTTGCTTCGTAAGGAGTTTCCTGAATTGGGT 1069
Query 1006 TTAAAGAAGGAGAACTGTTCGGAGATGACTTGGTTTCAGTCAGCTTTATGGTGGGATAAT 1065
|||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1070 TTAAAGAAGGAGAATTGTACGGAGATGACTTGGTTTCAGTCTGCTTTATGGTGGGATAAT 1129
Query 1066 CGTGTTAACCCTACTCAGATTGATCCTAAAGTGTTTCTCGATCGGAATCTTGATAGAGCG 1125
||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1130 CGTGTTAACGCTACTCAGGTTGATCCTAAAGTGTTTCTTGATCGGAATCTTGATACAGCG 1189
Query 1126 AATTTCGGAAAGAGGAAATCGGATTACGTTGCGAGTGAGATTCCTAGAGATGGG-ATTGA 1184
| |||||| |||||||||||||| || || |||| || ||||||||| || || |||||
Sbjct 1190 AGTTTCGGGAAGAGGAAATCGGACTATGTCGCGACTGCGATTCCTAG-GAAAGGTATTGA 1248
Query 1185 GTCTTTGTTCAAGAAGATGA-CTGAGCTGGGGAAAATCGGGCTTGTTTTTAATCCGTATG 1243
|||||||||||||||||||| | ||| | |||||||||||||||||||| ||||||||||
Sbjct 1249 GTCTTTGTTCAAGAAGATGATC-GAGTTAGGGAAAATCGGGCTTGTTTTCAATCCGTATG 1307
Query 1244 GTGGGAAAATGGCGGAGGTTACGGTTAACGCGACGCCGTTTCCGCACCGAAGCAAGCTTT 1303
| |||||||||||||||||| |||||||||||||||| ||||| || |||| ||||||||
Sbjct 1308 GAGGGAAAATGGCGGAGGTTGCGGTTAACGCGACGCCATTTCCTCATCGAAACAAGCTTT 1367
Query 1304 TTAAGATTCAGTACTCGGTGA-CTTGGCAAGAAAACTCTGTC-GAGATAGAGAAGGGTTT 1361
| |||||||||||||| |||| || || |||||||||||| | |||||||||||||| |
Sbjct 1368 TCAAGATTCAGTACTCTGTGAACT-GGAAAGAAAACTCTG-CAGAGATAGAGAAGGGGTA 1425
Query 1362 CTTGAATCAGGCTAACGTTCTTTATAGTTTCATGACCGGGTTTGTGAGCAAGAACCCTAG 1421
||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1426 CTTGAATCAGGCTAAGGTGCTTTACAGTTTCATGACCGGTTTTGTGAGCAAGAACCCTAG 1485
Query 1422 AAATGCTTACTTGAATTACCGAGATGTCGATATAGGTGTGAATGATCATGGTACGAATAG 1481
| ||| ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 1486 GAGTGCGTACTTCAATTACCGGGATGTGGATATCGGTGTGAATGATCATGGGGTGAATAG 1545
Query 1482 TTATGAGGAAGGAGAAGTGTATGGAAGGAAGTATTTTGGAGATAATTTTGATCGATTAGT 1541
||| |||||||||| |||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct 1546 TTACAAGGAAGGAGAGGTGTATGGAAAGAAGTATTTTGGAGAGAATTTCGATCGATTAGT 1605
Query 1542 AAAGGTTAAAACAGCGGCTGATCCAGATAATTTCTTCAGGAATGAACAGAGTATACCTAC 1601
||| ||||||| |||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 1606 GAAGATTAAAACCGCGGTTGATCCCGGGAATTTCTTCAGGAATGAACAGAGTATACCTAC 1665
Query 1602 C 1602
|
Sbjct 1666 C 1666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5