BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20860.1
Length=1846
Score E
Sequences producing significant alignments: (Bits) Value
Ahg354696 jgi|Araly1|354696|fgenesh1_pg.C_scaffold_7001869 2470 0.0
> Ahg354696 jgi|Araly1|354696|fgenesh1_pg.C_scaffold_7001869
Length=1644
Score = 2470 bits (1337), Expect = 0.0
Identities = 1482/1554 (95%), Gaps = 2/1554 (0%)
Strand=Plus/Plus
Query 145 TTCTATGTGTCAAATCTGTTTATTCTACTCCGACAAGAGAACAATTCCAAAATTGCTTGT 204
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 92 TTCAATGTGTCAAATCTGTTTATTCTACTCCCACAAGAGAACAATTCCAAAATTGCTTGT 151
Query 205 CCACAAAACAATTCAATTCTACCCTCAAAAACCCTATAAATCTCACCACTCATACACTAG 264
||||||||||||||||||| ||| || ||||||||||||||||||||||||||| || ||
Sbjct 152 CCACAAAACAATTCAATTCAACCTTCCAAAACCCTATAAATCTCACCACTCATAAACCAG 211
Query 265 ATTCCCGAGTTC-ACACCGACTTTTCCGAGTCTTCATCTCCAAATTCTAGTTTCCTCAAC 323
||||||||| || |||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 212 ATTCCCGAG-TCTACACCGACTTTTCCGAATCTTCATCTCCAAATTCTACTTTCCTCAAC 270
Query 324 TTGAATTTCACAAGCTTGAAGCCGATTCTCATCGTTAAGCCAAAATCCGAATCCGAAATA 383
||||||||||| || |||||||||||||| ||||| || || |||||||||||||||||
Sbjct 271 TTGAATTTCACCAGTTTGAAGCCGATTCTGATCGTAAAACCGAAATCCGAATCCGAAATC 330
Query 384 AAACAATCGATTTTATGCAGCAGGAAACTTGGAGTGCAAGTAAGAACAATGAGTGGTGGT 443
|||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 331 AAACAATCAATTCTATGCAGCAGGAAACTTGGAGTACAAGTAAGAACCATGAGTGGTGGT 390
Query 444 CATGACTACGAAGGTCTATCTTACCTCTCACTATCACCTTTCATAATCGTCGACCTCGTT 503
||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||
Sbjct 391 CATGACTACGAAGGTCTATCTTACCTCTCACAATCACCATTCATAATCGTTGACCTCGTT 450
Query 504 AACCTCAGATCAATCAGCATCAACCTCACAGACGAGACCGCTTGGATCCAATCGGGCGCA 563
||||||||||| |||| | |||||||||||||||| | ||||||||||||||||||||||
Sbjct 451 AACCTCAGATCGATCAACCTCAACCTCACAGACGACAACGCTTGGATCCAATCGGGCGCA 510
Query 564 ACACTCGGCGAAGTCTACTACAAGATCGCCAAAACCAGCAAGATCCATGCCTTTGCCGCA 623
|||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 511 ACACTCGGCGAACTCTATTACAAAATCGCCAAAACCAGCAAGATCCATGCCTTTGCCGCA 570
Query 624 GGGATATGTCCAAGTGTTGGTGTTGGTGGACATATTAGCGGAGGAGGATTCGGTACAATA 683
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 571 GGGATATGTCCAAGTGTTGGTGTTGGCGGGCATATTAGCGGTGGAGGATTCGGTACAATA 630
Query 684 ATGAGGAAATACGGTTTAGCGTCTGATAACGTTGTGGACGCACGTTTGATGGATGTAAAT 743
||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 631 ATGAGGAAACACGGTTTAGCGTCTGATAACGTTGTAGACGCGCGTTTGATGGACGTAAAT 690
Query 744 GGGAAAACTCTTGACCGGAAAACGATGGGAGAGGATTTGTTTTGGGCGCTTAGAGGCGGT 803
||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 691 GGGAAAATTCTTGACCGGAAAACGATGGGGGAGGATTTGTTTTGGGCGCTAAGAGGCGGT 750
Query 804 GGAGCTGCGAGTTTTGGCGTTGTCTTGTCGTGGAAGGTTAAGCTTGCTAGGGTTCCTGAA 863
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 751 GGAGCTGCAAGTTTTGGCGTTGTCTTGTCATGGAAGGTTAAGCTTGCTAGGGTTCCTGAA 810
Query 864 AAGGTAACTTGTTTCATAAGTCAACATCCGATGGGACCTAGCATGAACAAGCTTGTTCAT 923
||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 811 AAGGTTACTTGTTTCATAAGTCAACATACGATGGGACCGAGCATGAACAAGCTTGTTCAT 870
Query 924 AGATGGCAATCCATAGGATCAGAGCTAGACGAAGATTTATTCATCAGAGTCATTATTGAC 983
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 871 AGATGGCAATCCATAGGATCAGAGCTAGACGAAGATTTATTCATCAGAGTTATTATTGAT 930
Query 984 AACAGTCTAGAAGGGAATCAAAGAAAAGTGAAATCAACATTTCAAACTCTATTTCTTGGT 1043
||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct 931 AACAGTCTAGAAGGGAATCAAAGAAGAGTGAAATCTACATTTCAAACTCTTTTTCTTGGT 990
Query 1044 GGAATCGATAGACTGATTCCTCTGATGAACCAGAAGTTTCCGGAACTCGGCTTACGATCT 1103
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 991 GGAATCGATAGATTGATTCCTCTGATGAACCAGAAGTTTCCGGAACTCGGTTTACGATCT 1050
Query 1104 CAAGACTGTTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGATCAGGA 1163
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CAAGACTGCTCGGAAATGAGCTGGATCGAATCGATAATGTTCTTCAACTGGAGATCAGGA 1110
Query 1164 CAGCCGTTAGAGATTTTGCTCAACAGAGACCTAAGATTCGAGGATCAGTATTTCAAAGCA 1223
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1111 CAGCCGTTAGAGATTTTGCTCAACAGAGACCTAAGATTCGAAGATCAGTATTTCAAAGCA 1170
Query 1224 AAGTCAGATTATGTTCAAAAACCCGTTCCTGAAAACGTTTTCGAAGAAGTAACCAAGAGA 1283
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 AAATCAGATTATGTTCAAAAACCCGTTCCTGAAAACGTTTTCGAAGAAGTAACCAAGAGA 1230
Query 1284 TTTCTCGAGCAAGATACTCCACTGATGATCTTTGAGCCATTGGGTGGGAAAATCAGCAAG 1343
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1231 TTTCTCGAGCAAGATACTCCATTGATGATCTTCGAGCCATTGGGTGGGAAAATCAGCAAG 1290
Query 1344 ATTTCAGAAACAGAATCTCCATATCCACACAGAAGAGGTAATCTGTATAATATACAGTAC 1403
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1291 ATTTCAGAAACAGAGTCTCCATATCCACACAGGAGAGGGAATCTGTATAATATACAGTAC 1350
Query 1404 ATGGTGAAATGGAAAGTGAATGAAGTCGAGGAGATGAACAAACATGTCAGGTGGATGAGA 1463
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1351 ATGGTGAAATGGAAAGTGAATGAAGTCGAGGAGATGAACAAACATGTTAGGTGGATGAGA 1410
Query 1464 TCGTTACACGATTACATGACTCCGTATGTTTCTAAATCGCCGAGAGGAGCTTATTTGAAT 1523
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 TCGCTACACGATTACATGACTCCGTATGTTTCTAAATCGCCGAGAGGAGCTTATTTGAAT 1470
Query 1524 TACAGAGATCTTGATTTGGGCTCGACCAAAGGGATTAACACGAGTTTCGAAGATGCAAGG 1583
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1471 TACAGAGATCTTGATTTGGGCTCGACCAAAGGGATCAACACAAGTTTCGAAGATGCGAGG 1530
Query 1584 AAATGGGGTGAGACTTATTTCAAAGGTAATTTCAAGAGATTAGGTTTGGTTAAAGGGAAG 1643
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1531 AAATGGGGTGAGACATATTTCAAAGGTAACTTCAAGAGATTGGGTTTGGTTAAAGGGAAG 1590
Query 1644 ATTGATCCAACAAATTTCTTCAGGAACGAACAGAGTATTCCTCCTCTGTTTTGA 1697
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 ATTGATCCCACAAATTTCTTCAGGAACGAACAGAGTATTCCTCCTCTGTTTTGA 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69324245900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5