BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G20870.1 Length=1102 Score E Sequences producing significant alignments: (Bits) Value Ahg946108 jgi|Araly1|946108|scaffold_702337.1 1247 0.0 > Ahg946108 jgi|Araly1|946108|scaffold_702337.1 Length=756 Score = 1247 bits (675), Expect = 0.0 Identities = 731/758 (96%), Gaps = 4/758 (1%) Strand=Plus/Plus Query 197 TCAGTCTCATAAAGTGGCAAAGATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCC 256 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCAGTCTCATATAGTAGCAAAGATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCC 60 Query 257 ACTTGTGTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTAT 316 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACTTGTCTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTAT 120 Query 317 TGTATGCGTTGAGGGTCCTCGTTTTTTCGAAAGTGATTTTTGGGAGTTTTTGACTCGCAC 376 ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 121 TGTATGCGTAGAGGGTCCTCGTTTTTTTGAAAGTGATTTTTGGGAGTTCTTGACTCGCAC 180 Query 377 GGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATC 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATC 240 Query 437 GGCGAGTAAGGGACTTACGTTTCCCCAGATCGGTTTAATAGTTGCTTTTGGTGTACTCAC 496 |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 241 GGCGAGGAAGGGACTTACAATTCCCCAGATCGGTTTAATAGTTGCCTTTGGTGTACTCAC 300 Query 497 GTGGACACTGCTCGAGTACACGCTTCATCGCTTCCTTTTCCACATCCAAACCAAGAGTTA 556 |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 301 ATGGACACTTCTCGAGTACACGCTTCATCGTTTCCTTTTCCATATCCAAACCAAGAGTTA 360 Query 557 CTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGG 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGG 420 Query 617 CCTTCGTCTTGTTTTCCCTCCTACAGCAACAGCTATTCTCTTGGTTCCACTATGGAAGCT 676 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 421 CCTTCGTCTTGTTTTCCCTCCTACCGCTACAGCTATTCTCTTGGTTCCACTATGGAAGCT 480 Query 677 TCTCCATCTCCTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGG 736 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TCTCCATATCTTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGG 540 Query 737 CTATGTGATGTATGATATTACCCATTACTATCTACACCATGGTCAACCTAAAGAACCAAC 796 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 541 CTATGTGATGTATGATATTACTCATTACTATCTACACCATGGTCAACCTAAAGAACCAAC 600 Query 797 CTTTAAACATCTTAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATA 856 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTTTAAACATCTGAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATA 660 Query 857 TGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTATTAAAG-CCG 915 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 661 TGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTAT-AAAGGCCG 719 Query 916 CTGC-GAAGAAGAGCTAAATCGGATTTCTGTTTGCCAT 952 | | |||||| ||||||| |||||||||||||||||| Sbjct 720 CC-CAGAAGAAAAGCTAAACCGGATTTCTGTTTGCCAT 756 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41058381609 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5