BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20870.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946108 jgi|Araly1|946108|scaffold_702337.1 1247 0.0
> Ahg946108 jgi|Araly1|946108|scaffold_702337.1
Length=756
Score = 1247 bits (675), Expect = 0.0
Identities = 731/758 (96%), Gaps = 4/758 (1%)
Strand=Plus/Plus
Query 197 TCAGTCTCATAAAGTGGCAAAGATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCC 256
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAGTCTCATATAGTAGCAAAGATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCC 60
Query 257 ACTTGTGTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTAT 316
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTTGTCTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTAT 120
Query 317 TGTATGCGTTGAGGGTCCTCGTTTTTTCGAAAGTGATTTTTGGGAGTTTTTGACTCGCAC 376
||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 121 TGTATGCGTAGAGGGTCCTCGTTTTTTTGAAAGTGATTTTTGGGAGTTCTTGACTCGCAC 180
Query 377 GGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATC 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATC 240
Query 437 GGCGAGTAAGGGACTTACGTTTCCCCAGATCGGTTTAATAGTTGCTTTTGGTGTACTCAC 496
|||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 GGCGAGGAAGGGACTTACAATTCCCCAGATCGGTTTAATAGTTGCCTTTGGTGTACTCAC 300
Query 497 GTGGACACTGCTCGAGTACACGCTTCATCGCTTCCTTTTCCACATCCAAACCAAGAGTTA 556
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 301 ATGGACACTTCTCGAGTACACGCTTCATCGTTTCCTTTTCCATATCCAAACCAAGAGTTA 360
Query 557 CTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGG 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGG 420
Query 617 CCTTCGTCTTGTTTTCCCTCCTACAGCAACAGCTATTCTCTTGGTTCCACTATGGAAGCT 676
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 421 CCTTCGTCTTGTTTTCCCTCCTACCGCTACAGCTATTCTCTTGGTTCCACTATGGAAGCT 480
Query 677 TCTCCATCTCCTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGG 736
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTCCATATCTTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGG 540
Query 737 CTATGTGATGTATGATATTACCCATTACTATCTACACCATGGTCAACCTAAAGAACCAAC 796
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTATGTGATGTATGATATTACTCATTACTATCTACACCATGGTCAACCTAAAGAACCAAC 600
Query 797 CTTTAAACATCTTAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATA 856
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTTAAACATCTGAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATA 660
Query 857 TGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTATTAAAG-CCG 915
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 661 TGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTAT-AAAGGCCG 719
Query 916 CTGC-GAAGAAGAGCTAAATCGGATTTCTGTTTGCCAT 952
| | |||||| ||||||| ||||||||||||||||||
Sbjct 720 CC-CAGAAGAAAAGCTAAACCGGATTTCTGTTTGCCAT 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5