BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G20870.1

Length=1102
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg946108 jgi|Araly1|946108|scaffold_702337.1                       1247    0.0  


> Ahg946108 jgi|Araly1|946108|scaffold_702337.1
Length=756

 Score = 1247 bits (675),  Expect = 0.0
 Identities = 731/758 (96%), Gaps = 4/758 (1%)
 Strand=Plus/Plus

Query  197  TCAGTCTCATAAAGTGGCAAAGATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCC  256
            ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCAGTCTCATATAGTAGCAAAGATGGTTGCAGAACGATACACAGTCGATTTGAATAAGCC  60

Query  257  ACTTGTGTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTAT  316
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACTTGTCTTTCAGGTTGGTCATCTTGGCGAAGAATATCAGGAATGGATTCATCAACCTAT  120

Query  317  TGTATGCGTTGAGGGTCCTCGTTTTTTCGAAAGTGATTTTTGGGAGTTTTTGACTCGCAC  376
            ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  121  TGTATGCGTAGAGGGTCCTCGTTTTTTTGAAAGTGATTTTTGGGAGTTCTTGACTCGCAC  180

Query  377  GGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATC  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGTTTGGTGGGCAATCCCAACAATCTGGCTTCCAGTTGTTTGCTACGTTCTTTCAATATC  240

Query  437  GGCGAGTAAGGGACTTACGTTTCCCCAGATCGGTTTAATAGTTGCTTTTGGTGTACTCAC  496
            |||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||
Sbjct  241  GGCGAGGAAGGGACTTACAATTCCCCAGATCGGTTTAATAGTTGCCTTTGGTGTACTCAC  300

Query  497  GTGGACACTGCTCGAGTACACGCTTCATCGCTTCCTTTTCCACATCCAAACCAAGAGTTA  556
             |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  301  ATGGACACTTCTCGAGTACACGCTTCATCGTTTCCTTTTCCATATCCAAACCAAGAGTTA  360

Query  557  CTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGG  616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CTGGGCAAACACTGCACACTATCTTCTTCATGGATGCCATCACAAGCACCCACAAGACGG  420

Query  617  CCTTCGTCTTGTTTTCCCTCCTACAGCAACAGCTATTCTCTTGGTTCCACTATGGAAGCT  676
            |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  421  CCTTCGTCTTGTTTTCCCTCCTACCGCTACAGCTATTCTCTTGGTTCCACTATGGAAGCT  480

Query  677  TCTCCATCTCCTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGG  736
            ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  TCTCCATATCTTAGCTACTCCTGCTACAGCACCTGCTATTCTTGGAGGCATATTGTTTGG  540

Query  737  CTATGTGATGTATGATATTACCCATTACTATCTACACCATGGTCAACCTAAAGAACCAAC  796
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  541  CTATGTGATGTATGATATTACTCATTACTATCTACACCATGGTCAACCTAAAGAACCAAC  600

Query  797  CTTTAAACATCTTAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATA  856
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  601  CTTTAAACATCTGAAGAAATACCACCTGAATCATCACTTTAGGATTCAGGACAAAGGATA  660

Query  857  TGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTATTAAAG-CCG  915
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct  661  TGGAATCACTTCCTCTCTATGGGACAAAGTCTTTGGAACACTTCCCGGTAT-AAAGGCCG  719

Query  916  CTGC-GAAGAAGAGCTAAATCGGATTTCTGTTTGCCAT  952
            |  | |||||| ||||||| ||||||||||||||||||
Sbjct  720  CC-CAGAAGAAAAGCTAAACCGGATTTCTGTTTGCCAT  756



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41058381609


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5