BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20880.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492798 jgi|Araly1|492798|fgenesh2_kg.7__2231__AT4G20880.1 1605 0.0
> Ahg492798 jgi|Araly1|492798|fgenesh2_kg.7__2231__AT4G20880.1
Length=1439
Score = 1605 bits (869), Expect = 0.0
Identities = 1162/1295 (90%), Gaps = 54/1295 (4%)
Strand=Plus/Plus
Query 168 ATCCTTTTTTCTTTC-TTTCCTTCAACATGCCTTTACCTTGGAAGAAATCTAAATCTAGT 226
|||||||||| |||| ||| |||| |||||||||||||||||||||||| |||||||||
Sbjct 127 ATCCTTTTTT-TTTCTTTTTCTTCGCCATGCCTTTACCTTGGAAGAAATCGAAATCTAGT 185
Query 227 CGGATCTCTAGATTCGTATCAGACTTTCAACAATCTCCTAAACATGGTGGATCTCTCGTT 286
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 186 CGGATCTCTAGATTCGTATCAGACCTTCAACAATCTCCTAAACATGGTGGATCTCTCGTT 245
Query 287 GTTGAAACTGGTTTCCCAACTTCTTTAATCGATCTCTTTGTTAAGAATCGCGATCGTCTC 346
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 246 GTTGAAACTGGATTCCCAACTTCTTTAATCGATCTCTTCGTTAAGAATCGCGATCGTCTC 305
Query 347 AAAAAACAATCTTCAAAACGTAACAACAAGAACAAC--A----A-A-G-C--C-CAG--- 391
|| ||||||||||||||||||||||||||||||||| | | | | | | |||
Sbjct 306 AAGAAACAATCTTCAAAACGTAACAACAAGAACAACAAAGCCCAGACGACGGCTCAGACT 365
Query 392 ---A---CT--G---AAAC-GCGTGTTTTGTCTCCACCTCCTCCTCATATGTCTTTGCAG 439
| || | |||| ||||||||||||||| |||||||||| | |||||||||||
Sbjct 366 CAAACCGCTCCGACAAAACGGCGTGTTTTGTCTCCGCCTCCTCCTCCTCTGTCTTTGCAG 425
Query 440 CGTCGTATGTCTCTTCCTTCCAAGCTTGATCCAGCTTTGGTTACAGAGGATTCTCCTTTG 499
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 426 CGTCGTATGTCTCTTCCTTCGAAGCTTGATCCAGCTTTGGTTACAGAGGATCCTCCTTTG 485
Query 500 GTGAGAAAGATCGAGGAAACTTCTGTTCCGGAG-AT---TAT--C--C-ATGAAGAC--- 547
||||| ||||||||||||| || | |||||||| || || | | | || |||
Sbjct 486 GTGAGTAAGATCGAGGAAAGTTTTATTCCGGAGAATAGACATGACGGCGAAGACGACGGT 545
Query 548 -G--ACGGTGGTCATCGCGGTGGAGGAGGAGGAGGGTGTGTTTTGATAGTGGTGGTGTTT 604
| |||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 546 GGAAACGGTGGTAATCGCGGCGGAGGAGGAGGAGGGTGTGTTTTAATGGTGGTGGTGTTT 605
Query 605 AAGGTTTTTATGGTGGCTGTGCTTGCCTTGAGCACGAAGAAGCTCGCCGTGGGGATCACG 664
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 606 AAGGTTTTTATGGTGGCGGTGCTCGCGTTGAGCACGAAGAAGCTCGCCGTGGGGATCACG 665
Query 665 CTCTCTGCTTTTGCCCTTCTCTTCCTCGAGCTTGCGGTGGCGCGTGTCTTCACGTACTTG 724
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 666 CTCTCCGCTTTTTCCCTTCTCTTCCTCGAGCTCGCGGTGGCGCGTGTCTTCACGTACCTG 725
Query 725 AATCTCTGTCCCGACGCGCAGATTCGGATAGATTCTTTGATCGATAAGCTCATAGGGAAG 784
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 726 AATCTCTGTCCAGACGCGCAGATTCGGATAGATTCGTTGATCGATAAACTCATAGGGAAG 785
Query 785 CGACATAaagagaagctagaagaagaagaagaaTCAACATCGACGCATGACAGAAGAAAC 844
||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 786 CGACATAAAGAGAAGCTAGAAGAAGAAGAAGAATCGTTATCAACGCCTGACAGAAGAAAC 845
Query 845 AATGTCTAC-TTTGAAATCATCGAAGAACCTAGAGAGGAGATTAGAGTCACTCCTCAATC 903
||||||| | | ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 846 AATGTCT-CGTCTGAAATCATCGAAGAACCTAGAGAGGAAATTAGAGTCGTTCCTCAATC 904
Query 904 GGATTCGTCGTCATTGGAGAAGGCGAAACTTGTGGTGGATGAGAAGAAAGAAATGCAGAC 963
||||||||| ||||| ||||||| |||| ||||||||| |||||||| || |||| ||
Sbjct 905 GGATTCGTCCACATTGAAGAAGGCTAAACCTGTGGTGGAGGAGAAGAAGGACGTGCAAAC 964
Query 964 GATAAGAGATGTTATGTTTAAGACTGAGAAAAGCAAAAGCGCGAAGCTGAAATCAaagat 1023
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GATAAGAGATGTTGTGTTTAAGACTGAGAAAAGCAAAAGCGCGAAGCTGAAATCAAAGAT 1024
Query 1024 tgtgaagaagattgtgccaaagaagctaaggagttataagaagaagaagaagatgaagaa 1083
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1025 TGTGAAGAAGATTGTTCCAAAGAAGTTGAGGAGTTATAAGAAGAAGAAGAAGATGAAGAT 1084
Query 1084 caaagaaaaagaagaagaagaagttgaacttgaaactgaagaagaagGGTCTATGACAGA 1143
||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 1085 CAAAGAAAAAGAAGAAGAAGAAGCTGAAGTTGAAACTGAAGAAGAAGGGTCTGTGACAGA 1144
Query 1144 AGTTTCTAGCTTGTATTCAGATGAGAGAATCGGGAGTGAAATCTCTGAGAGGGATGATTT 1203
||| || ||||||| |||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1145 AGTATCAAGCTTGTTTTCAGATGAGAGAATCGGAAGCGAAATCTCTGAGAGAGATGATTT 1204
Query 1204 GAGTTCGAATCCGCCATTTTTAGAGAGTTGTACAGAGGTTGA--A-GAAGAAGAAGA-GA 1259
||||||||||||||||| |||||||||||||||||| |||| | ||||||||||| ||
Sbjct 1205 AAGTTCGAATCCGCCATTGTTAGAGAGTTGTACAGAGATTGATGAAGAAGAAGAAGAAGA 1264
Query 1260 C-T-GGACCAAAAGAGGATCTAACGAAAGTGATTGGTT-TGATAGTGATTGTTCTTGTTG 1316
| |||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 1265 AATTGGACCAAAAGGGGATCTAACGAAAGCGAT-GGTTCTGATAGTGATTGTTCTTGTTG 1323
Query 1317 GATTGCTGTGTGGGAAAGTCTTTGCTATTGGTCTGACACTCTCTTGGTGTCTGATTCTCA 1376
||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GATTGTTAAGTGGGAAAGTTTTTGCTATTGGTCTGACACTCTCTTGGTGTCTGATTCTCA 1383
Query 1377 GAGTTTTCTGTTGCAAATCTCAAACCAGTTTCTGA 1411
|||||||||| |||||||||||||||||| |||||
Sbjct 1384 GAGTTTTCTGCTGCAAATCTCAAACCAGTCTCTGA 1418
Score = 226 bits (122), Expect = 4e-58
Identities = 127/129 (98%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 13 TTCTTCTCCATTTATTGCATTTGTCTCTCCAAAATGTCTAATTAATGGTTTTGATCTTCC 72
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTCCATTTATTGCATTT-TCTCTCC-AAATGTCTAATTAATGGTTTTGATCTTCC 58
Query 73 AACCAGATCTTCTTCTCTATCTCTTCGACAAACCCTTTTTTCTGGGTTCTTCGGAGAGGT 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AACCAGATCTTCTTCTCTATCTCTTCGACAAACCCTTTTTTCTGGGTTCTTCGGAGAGGT 118
Query 133 GATTTATCA 141
|||||||||
Sbjct 119 GATTTATCA 127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5