BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20900.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329509 jgi|Araly1|329509|fgenesh1_pm.C_scaffold_7001736 961 0.0
Ahg915783 jgi|Araly1|915783|Al_scaffold_0008_534 355 4e-97
> Ahg329509 jgi|Araly1|329509|fgenesh1_pm.C_scaffold_7001736
Length=1281
Score = 961 bits (520), Expect = 0.0
Identities = 604/645 (94%), Gaps = 3/645 (0%)
Strand=Plus/Plus
Query 1 ATGTGTCCCTGCGTAGAGCGTCGTGCTCCACCTGGAGTTTACTATACTCCGCCGCCGGCG 60
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTGTCCCTGCGAAGAGCGTCGTGCTCCACCTGGGGTTTACTATACTCCGCCGCCGGCG 60
Query 61 AGAACAAGTGATCATGTGGCGGCGATGCCGATGACGGAGAGGAGGAGACCACCGTATTCT 120
||||||||| | ||||||||||||||||| || |||||||||| |||||||||| ||||
Sbjct 61 AGAACAAGT--T-ATGTGGCGGCGATGCCGTTGTCGGAGAGGAGAAGACCACCGTTTTCT 117
Query 121 TGTTCTTCGTCGTCGGAGAGACGTGATCCGTTTCACATTGTTCATAAAGTTCCTTCTGGT 180
||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||
Sbjct 118 TGTTCGTCGTCGTCGGAGAAACGTGATCCGTTTCACATTGTTCACAAGGTTCCTTCTGGT 177
Query 181 GATTCTCCTTACGTCAGAGCCAAACACGCGCAGTTGATAGATAAAGATCCGAACAGAGCT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 178 GATTCTCCTTACGTCAGAGCCAAACATGCGCAGTTGATAGATAAAGATCCGAATAGAGCT 237
Query 241 ATATCATTGTTTTGGACTGCAATAAACGCTGGAGATCGAGTTGATAGTGCTTTGAAGGAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATATCATTGTTTTGGACTGCAATAAACGCTGGAGATCGAGTTGATAGTGCTTTGAAGGAC 297
Query 301 ATGGCCGTTGTAATGAAACAATTAGGTCGATCTGATGAAGGGATTGAAGCTATTAAATCC 360
|||| |||||||||||||| |||| |||||||| ||||| |||||||| || | ||||
Sbjct 298 ATGGTAGTTGTAATGAAACAGTTAGACCGATCTGACGAAGGAATTGAAGCCATCAGATCC 357
Query 361 TTTCGGTATCTCTGTTCTTTCGAGTCTCAAGACTCGATTGATAACTTGCTACTCGAGCTC 420
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 358 TTTCGGTATCTCTGTTCTTTCGAGTCTCAAGACTCCATTGATAACTTGCTACTCGAACTC 417
Query 421 TACAAGAAGTCAGGGAGAATTGAAGAAGAAGCTGTTTTACTTGAGCACAAACTGCAAACA 480
||||| ||||||||||| |||||||||||||||| |||||||||||||| ||| |||||
Sbjct 418 TACAAAAAGTCAGGGAGGATTGAAGAAGAAGCTGAGTTACTTGAGCACAAGCTGAAAACA 477
Query 481 CTCGAACAAGGAATGGGATTTGGTGGTAGAGTCAGTAGAGCAAAAAGGGTTCAAGGAAAA 540
||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 478 CTCGAACAAGGAATGGGATTTGGAGGTAGAGTCATTAGAGCTAAAAGGGTTCAAGGAAAA 537
Query 541 CATGTTATTATGACTATCGAGCAAGAGAAAGCAAGGATACTAGGGAACTTGGGCTGGGTT 600
||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 538 CATGTTACAATGACTATCGAGCAAGAGAAAGCAAGGGTATTAGGGAACTTGGGCTGGGTT 597
Query 601 CATTTACAGTTACATAACTATGGAATTGCAGAGCAGCATTACAGG 645
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CATTTACAGTTACATAACTATGGAATTGCAGAGCAGCATTACAGG 642
Score = 833 bits (451), Expect = 0.0
Identities = 570/625 (91%), Gaps = 18/625 (3%)
Strand=Plus/Plus
Query 693 GAGAGCTTTGGGTTTGGAGCGAGACAAAAACAAACTCTGTAACCTTGCAATCTGCTTGAT 752
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 642 GAGAGCTTTGGGTTTGGAGCGAGACAAAAACAAACTGTGCAACCTTGCAATCTGCTTGAT 701
Query 753 GCGTATGAGTCGAATTCCTGAAGCTAAATCTCTGCTTGATGATGTAAGAGATTCTCCTGC 812
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| || |
Sbjct 702 GCGTATGGGTCGAATTCCTGAAGCTAAATCTCTTCTTGATGATGTAAGAGATTCTTCTAC 761
Query 813 AGAGAGTGAATGCGGAGATGAACCATTCGCAAAGTCTTATGACCGAGCCGTCGAAATGTT 872
|||||||||||| ||||||||||||||| |||||||||||||||||||||| || |||||
Sbjct 762 AGAGAGTGAATGTGGAGATGAACCATTCACAAAGTCTTATGACCGAGCCGTTGAGATGTT 821
Query 873 AGCAGAAATAGAATCGAAAAAGCCAGAAGCTGATCTTTCGGAGAAGTTCTACGCGGGATG 932
|||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 822 AGCAGACATAGAATCAAAAAATCCAGAAGCTGATCTTTCGGATAAGTTCTACGCGGGATG 881
Query 933 TTCATTTGT-GAATAGGATGAAGGAAAATATAGCTCCTGGAACCGCAAACAAGAACTACT 991
|||||||| || | ||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 882 TTCATTTGCAGA-TGGGATGAAGGAAAACATAGCTCCTGGAATCGCAAACAAGAACTACT 940
Query 992 CAG-ATGTTTCTTCGTCTCCAGCATCTGT-GAGACCGAACTCTGCAGGTCTATATACACA 1049
| | |||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 941 C-GCATGTGTCTTCTTCTCCAGCATCTGTTG-GACCGAACTCTGCAGGTCTATATACACA 998
Query 1050 ACCACGCAGATGCAGATT-G---T-T-TGAAGAAGAGACGAGAGGTGCTGCTCGAAAGCT 1103
||||||| | |||||| | | | ||| |||||||| |||||||| |||||||||||
Sbjct 999 ACCACGCGGTTGCAGAGCAGGGATGTATGAGGAAGAGACCAGAGGTGCAGCTCGAAAGCT 1058
Query 1104 ACTATTTG-GAAAACC-ACAACCTTTTGGCTCTGAACAGATGAAGATCTTAGAGAGAGGA 1161
||| |||| |||| || | |||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 1059 ACTGTTTGAGAAA-CCGA-AACCTTTTGGTTCTGAACAGATTAAGATCTTAAAGAGAGGA 1116
Query 1162 GAAGAAGAACCC-ATGAAGCGAAAGAAACTGGACCAGAACATGATTCAATATCTCCATGA 1220
|||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1117 GAAGAAGAACCCCA-GACGCGAAAGAAACTGGACCCGAACATGATTCAATATCTCCATGA 1175
Query 1221 ATTCGTCAAAGATACAGCAGATGGTCCgaagagtgaatcaaagaaaagctgggcagatat 1280
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1176 ATTCATCAAAGATACAGCAGATGGTCCGAAGAATGAATCTAAGAAAAGCTGGGCAGATAT 1235
Query 1281 cgcagaagaggaagaagcagaagaa 1305
||||||||||||||||| |||||||
Sbjct 1236 CGCAGAAGAGGAAGAAGAAGAAGAA 1260
> Ahg915783 jgi|Araly1|915783|Al_scaffold_0008_534
Length=1413
Score = 355 bits (192), Expect = 4e-97
Identities = 393/488 (81%), Gaps = 22/488 (5%)
Strand=Plus/Plus
Query 169 GTTCCTTCTGGTGATTCTCCTTACGTCAGAGCCAAACACGCGCAGTTGATAGATAAAGAT 228
|||||| ||||||||||||||||||||||||||||||| || |||||| | |||||||
Sbjct 148 GTTCCTACTGGTGATTCTCCTTACGTCAGAGCCAAACATGCTCAGTTGGTTTCTAAAGAT 207
Query 229 CCGAA-CAGAGCTATATCATTGTTTTGGACTGCAATAAACGCTGGAGATCGAGTTGATAG 287
||| | | |||| || || ||||||||| |||| | || ||||||||| ||||||||||
Sbjct 208 CCGGATC-GAGCAATCTCGTTGTTTTGGGCTGCGGTTAATGCTGGAGATAGAGTTGATAG 266
Query 288 TGCTTTGAAGGATATGGCCGTTGTAATGAAACAATTAGGTCGATCTGATGAAGGGATTGA 347
||| |||||| |||||| ||||| ||||||| |||| ||||| |||||||| || ||
Sbjct 267 TGCATTGAAGAATATGGTAGTTGTTCTGAAACATTTAGACCGATCCGATGAAGGAATCGA 326
Query 348 AGCTATTAAATCCTTTCGGTATCTCTGTTCTTTCGAGTCTCAAGACTCGATTGATAACTT 407
|||||| ||||| ||||| ||||||||| |||| || |||||||| || |||||||||||
Sbjct 327 AGCTATCAAATCTTTTCGATATCTCTGTCCTTTTGAATCTCAAGATTCTATTGATAACTT 386
Query 408 GCTACTCGAGCTCTACAAGAAGTCAGGGAGAATTGA-AGAAGAAGCTGTTTTACTTGAGC 466
| |||| || |||||||||||||||||||| ||| | ||| ||||||| ||||||| |
Sbjct 387 GTTACTTGAACTCTACAAGAAGTCAGGGAGGATT-ACAGAGGAAGCTGAGCTACTTGAAC 445
Query 467 ACAAACTGCA-AACACTCGAACAAGGA-ATGGGATT-TGGTGGTAG-AGTCAGTAGAGCA 522
|||||||| | |||||| ||||| | | | | | | |||||| || | | | | |||
Sbjct 446 ACAAACTG-AGAACACTTGAACATG-ACACGC-ACTATGGTGGCAGGA-TGAAAATAGCG 501
Query 523 AAAAGG-GTTCAAGGAAAACATGTT-ATTATGACTATCGAGCAAGAGAAAGCA-AGGATA 579
||||| | || || | || | | ||||||||||||||||||||||| || ||
Sbjct 502 AAAAGAAGC-CACGGGGAGCA-GAACAACATGACTATCGAGCAAGAGAAAGCGCAG-ATT 558
Query 580 CTAGGGAACTTGGGCT-GGGTTCATTTACAG-TTACATAACTATGGAATTGCAGAGCAGC 637
||||||||||| | || ||||||| |||||| || |||||||||||||| |||||||||
Sbjct 559 CTAGGGAACTTAG-CTTGGGTTCACTTACAGCTT-CATAACTATGGAATCGCAGAGCAGT 616
Query 638 ATTACAGG 645
||||||||
Sbjct 617 ATTACAGG 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5