BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20920.1
Length=2734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890100 jgi|Araly1|890100|Al_scaffold_0007_2086 1934 0.0
Ahg492795 jgi|Araly1|492795|fgenesh2_kg.7__2228__AT4G20910.1 791 0.0
> Ahg890100 jgi|Araly1|890100|Al_scaffold_0007_2086
Length=2565
Score = 1934 bits (1047), Expect = 0.0
Identities = 1171/1232 (95%), Gaps = 3/1232 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGGTGAGGAGAAGCAGACTCTTACTCCAAAGGAGATGATACTTCAGAAGTTTGGT 60
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1 ATGGCGGGTGAGGAGAAGCAGACTCTTACTCCAAAGGAGATTATACATCAGAAGTTTGGT 60
Query 61 GTTAAAGCAATTTACAGAATTGAGGAAGTTCATGTTTCTTCGAATGATTGCCTCTATCGT 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GTTAAAGCAATTTATAGAATTGAGGAAGTTCATGTTTCTTCGAATGAATGCCTCTATCGT 120
Query 121 TGCCACTTGCAGCTACCAGAATTTTCTGTTGTATCAAATGTCTTCAAGAGAAAAAAGGAT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 121 TGCCACTTGCAGCTACCAGAATTTTCTGTTGTATCAAATGTTTTCAAGAGAAAGAAGGAT 180
Query 181 TCCGAACAATCTGCTGCTGAATTGGCTCTCGAGAAGCTAGGAATTCAGTCTCAGGATGAT 240
||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TCCGAACAATCCGCTGCAGAATTGGCTCTCGAGAAGCTAGGAATTCAGCCTCAGGATGAT 240
Query 241 GATGATGTTGATATAACTGTGGATGAAGCTTGGAATAATATCGTTGAACGCATTAAGTAT 300
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GATGATGATGATATAACTGTGGATGAAGCTTGGAATGATATCGTTGAACGCATTAAGTAT 300
Query 301 ATATTTTCTGATGAGTTTCTTTCAGTTGATCATCCTCTAGGAGGTCACCTAAGGGCGGCA 360
||||||||||||||||| ||||||| |||||||||||| |||||||| || |||||||||
Sbjct 301 ATATTTTCTGATGAGTTCCTTTCAGCTGATCATCCTCTGGGAGGTCATCTTAGGGCGGCA 360
Query 361 TTGCAAAGGGATGGCGAACGTTGCGGATCACTTCCTGTTTCTGTCATTGCTACATTTGAT 420
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TTGCAAAGGGATGGTGAACGTTGCGGATCACTTCCTGTTTCTGTCATTGCGACATTTGAT 420
Query 421 GCAAAGATTAACAGTCGCTGTAAAGTGATTGATCCTTCTGTAGAATCAGATCCTATCTTG 480
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 421 GCAAAGATTAACAGTCGCTGTAAAGTGATTGATCCTTCTGTGGACTCAGATCCTATCTTG 480
Query 481 CTCATGTCCTATGTCATGAAGGCTGCTGCAAAGTTGCCGGACTACATTGTTGTATCTCCG 540
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 481 CTCATGTCCTATGTCATGAAGGCTGCAGCAAAGTTGCCGGACTACATTGTCGTGTCTCCG 540
Query 541 CATGTCGATTCACTCCGAAGGAAAAAACCGTATCCTCCAGCAACTATTAAAGCACTGGCT 600
||||| |||||||| |||||||||||||| || |||||||||| ||| ||||| ||||
Sbjct 541 CATGTAGATTCACTACGAAGGAAAAAACCATACCCTCCAGCAATTATAAAAGCTCTGG-- 598
Query 601 ACTACTCATGTGAAAAGCATAAAAGCTGAGGCTGTGCATTTACAATGTACCGTTGGCGGT 660
|||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 599 -CTACTCATGTGAAAAGCATAAAAGTTGAGGCTGTGCATATACAATGTACTGTTGGCGGT 657
Query 661 GAAGAGGTTGTTAAGCCAGTCACTCTTGATATTTCATCAGGTCGGTATTACTTGGATATT 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAAGAAGTTGTTAAGCCAGTCACTCTTGATATTTCATCAGGTCGGTATTACTTGGATATT 717
Query 721 ATTGCTGACAAGCTTGGATTGAAGGATGGCAGCCAAGTGATGATATCAAGGACTATTGGC 780
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATTGCTGAAAAGCTTGGGTTGAAGGATGGCAGCCAAGTGATGATATCAAGGACTATTGGC 777
Query 781 AAAACTTCCTCTGGCTATGAGTGTAGAGTATATGCTGCCATTCCTAAGTTGAAGTCTTCC 840
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 778 AAAACTTCCTCTGGCTATGAGTGTAGAGTATACGCTGCCATGCCTAAGTTGAAGTCTTTC 837
Query 841 GATAATTCATGGAAAGCCCGTGAAAAACGTCCAATCATTGAATCATCACATCTTGAAAAG 900
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 838 GATAATTCATGGAAAGCCCGTGAAAAACGTCCAATTAATGAATCATCACATCTTGAAAAG 897
Query 901 TCTCGGAATGCAAAAGCAAGTTTTGTTTGTGGTGTAGATATTCACGGTGATGCGATCGTG 960
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||
Sbjct 898 TCTCGGAATGCAAAAGCAAGTTTTGTTTGTGGTCTTGATGTTCACGGTGATGCGATTGTG 957
Query 961 GCATCTGTTGGTTACCCATGGAGGATATGTTGCGGTATTTCTCCTAATGGAATCTATAAA 1020
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 GCATCTGTTGGTTACCCATGGAGGATATGTTGCGGTATGTCTCCTAATGGAATCTATAAA 1017
Query 1021 TTATCCCGAGAAGCGATAATAGCGGCGCAGTTACCTTTTTCATTCACTACAAAGTCTACT 1080
||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1018 CTATCCCGAGAAGCAATAATTGCTGCGCAGTTGCCTTTTTCATTCACTACAAAGTCTACT 1077
Query 1081 TGGAGAGGTCCATTCCCCAGGGAGATTCTCTGCATGTTCTGCCGCCAGCAACAACTGGTA 1140
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1078 TGGAGAGGTCCATTCCCCAGGGAGATTCTCTGCATGTTCTGCCGTCAGCAACAACTAGCA 1137
Query 1141 GAGCCCATTTTTACTATATCTACTGCTCCTGTGAAACCAATGTCTTGCATATTAAGATCC 1200
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GAACCCATTTTTACTTTATCTACTGCTCCTGTGAAACCAATGTCTTGCATATTAAGATCC 1197
Query 1201 TACCAGAAGTTGAAAGACTCAGAATGTGATGA 1232
|||||||||||||||||||| |||| ||||||
Sbjct 1198 TACCAGAAGTTGAAAGACTCTGAATCTGATGA 1229
Score = 1378 bits (746), Expect = 0.0
Identities = 865/921 (94%), Gaps = 13/921 (1%)
Strand=Plus/Plus
Query 1254 GAAAGACTCAGAATGTGATGATAGCGAATATCAGTATACGAGCAAGGGAAAAGAGGAGAT 1313
||||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1209 GAAAGACTCTGAATCTGATGATAGCGAATATCAATATGTGAGCAAGGGAAAAGAGGAGAT 1268
Query 1314 ACCAGAATCAGGGACTGGATATAGATGTGAAGTGAAAATTCTCTCAAAGTCCCAGGATTT 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 ACCAGAATCAGGGACTGGATATAGATGTGAAGTGAAAATTCTCTCAAAGTCCCAGGATTT 1328
Query 1374 GGTTTTAGATTGCTCGTCCAGAAAGTTCTATGAGAAGGAAAACCATGCTATTCAAAATGC 1433
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GGTTTTAGATTGCTCGTCGAAAAAGTTCTATGAGAAGGAAAACCATGCTATTCAAAATGC 1388
Query 1434 TTCGTTGAATGCCCTCTCATGGTTAAGTAGGCTTTTCGACGAGGGGGATGGGGACCCACT 1493
||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1389 TTCATTGGATGCCCTCTCATGGTTAAGTAGGCTTTTCGACGAGGGGGATGTGGACCCACT 1448
Query 1494 GCAAATATGTTATACG-GATGATCACCTGGATGCGGTATTTCAACAGAGGATCTTGATGA 1552
|||| ||||||||| | ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1449 GCAACCATGTTATACAAG-TGAACACCTGGATATGGTATTTCAACAGAGGATCTTGATGA 1507
Query 1553 AAGAGGCTGTTCCAAAGGGACATTTCCGAAATAGAGACGAAATGAATCAATATGAGGATC 1612
||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 1508 AAGAGGCTGTTCCAAGGGGACATTTCCGAAATAGAGACGAAAGGAATGAATATGAGGACC 1567
Query 1613 AAGTTCGTATTCAAACCATAACAAAGGGTTCCTTGGTTAGCATATGCTATTCTGTGTATT 1672
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1568 AAATTCGTATTCAATCCATAACAAAGGGTTCCTTGGTTATCATATGCTATTCTGTGTATT 1627
Query 1673 TGGATGTAGATGCTGATTTTTCAAAG-GATGGTAAATCTAAAAAAGAACTCATCGAAAGC 1731
|||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct 1628 TGGATGTAGATGCTGATTTTTCGA-GTGATGGTAAATCTAGAAAAGAACTCATCGAAAGC 1686
Query 1732 AATGAAGAGATAGAGTTTGAGGTGGGGAATGGTTCTATGAATCCACATCTTGAAGCAGTT 1791
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1687 AATGAAGAGATAGAGTTCGAGGTGGGGAATGGTTCTATGAATCCACATCTTGAATCAGTT 1746
Query 1792 GTTACTCAACTGGTTGTGGGCCAATATGCTCGTTTTTTAACTAATGCGCCTGCTGAAGAC 1851
|||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1747 GTTACTCAGCTGGCTGTGGGCCAATATGCTCGTTTTTTAACTGATGCGCCTGCTGAAGAC 1806
Query 1852 TTGTTTGTGACTGCTGCCACTGGTACCCAGAGAGATCGTTCACTTTTATCAGATGTCGCA 1911
||||||||||||||||||||||| |||||||||||||||||| || | | ||||
Sbjct 1807 TTGTTTGTGACTGCTGCCACTGGAACCCAGAGAGATCGTTCAG----AT-A--T--CGCA 1857
Query 1912 GGTTTTGAATACTGTGTACGTTTGTTGGGAGTGAAAGGGCCAACAGAAAAACGAATTGAG 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GGTTTTGAATACTGTGTACGTTTGTTGGGAGTGAAAGGGCCAACAGAAAAACGAATTGAG 1917
Query 1972 GCGGATTTTTTCAAACCTTCACTTTCAAAACAGCGTCTTGAATATGTAGTGAAACATATT 2031
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1918 GCGGATTTTTTCAAACCTTCACTTTCAAAACAGCGTCTTGAATATGCAGTGAAACATATA 1977
Query 2032 AAAGAATCGTCAGCTTCTACTCTGGTTGATTTTGGATGTGGATCTGGAAGTTTACTAGCA 2091
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1978 AAAGAATCGTCAGCTTCTACTCTGGTTGACTTTGGATGTGGATCTGGAAGTTTACTAGCC 2037
Query 2092 TCTATACTTGACTGTCCAACTTCACTTCAAACCATTGCTGGCGTTGACATCTCACATAAG 2151
||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2038 TCTTTACTTGACCATCCAACTTCACTTCAAACCATTGCTGGCGTTGACATCTCACAGAAG 2097
Query 2152 AGTCTTACCCGTGCTGCTAAG 2172
||||| |||||||||||||
Sbjct 2098 GGTCTTGTCCGTGCTGCTAAG 2118
Score = 654 bits (354), Expect = 0.0
Identities = 414/443 (93%), Gaps = 4/443 (1%)
Strand=Plus/Plus
Query 2292 AGGTCATTGAACACATGGAGGAGGATCAAGCCAGTCAATTCGGGAAAACAGTTCTAAGCT 2351
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2117 AGGTCATTGAACACATGGAGGAAGATCAAGCCTGTCAATTCGGGAAAACAGTTCTAAGCT 2176
Query 2352 TGTTTCGCCCGAAACTTCTGATTGTCTCCACACCAAACATCGAGTACAACACAAATTTCC 2411
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2177 TGTTTCGCCCGAAACTTCTCATTGTCTCCACACCAAACATCGAGTACAACAAAAATTTCC 2236
Query 2412 ATAAGTCTGGTCCTCCAAACCACCCAAAAAACAGATCCATGTCTTCACAGCTACCAAAAT 2471
| ||||||| |||||||||||||| ||||||||| |||||||| ||||||||| ||||
Sbjct 2237 ACAAGTCTGCTCCTCCAAACCACCTAAAAAACAGTTCCATGTC---ACAGCTACCTAAAT 2293
Query 2472 TCAGGAACCAAGACCACAAGTTTGAATGGACAAGGAAACAGTTTAAGCAGTGGGCATCTA 2531
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2294 TCAGGAACCAAGACCACAAGTTCGAATGGACAAGGAAACAGTTTAAGCAGTGGGCATCTA 2353
Query 2532 AACTCGCTAAACGCCACAACTACAGCGTCTATTTTAGCGGTGTTGGTGGGTCTGGTAAAG 2591
| |||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct 2354 AGCTCGCTAAACGCCATAACTACAGCGTCTACTTTAGCGGTGTTGGTGAGTCTGGTAAAG 2413
Query 2592 GAGACCCCGGGTTTGCTTCTCAAATTGTTGTTTTTAGACGGATATCTTTGTCCAACATAG 2651
||| ||||||||||||||||| |||| |||||| ||||||| ||||||||||||| | |
Sbjct 2414 CAGATCCCGGGTTTGCTTCTCAGATTGCTGTTTTCAGACGGAAATCTTTGTCCAACGTTG 2473
Query 2652 TGGAGAAGGTCTCAGAAGGCTCGATGCAGCCTTATAAAATCATATGGAAATGGTCAAAGA 2711
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 2474 TGGAGAAGGTCTCAGAAGGCTCGATGCAGCCTTATAAAGTCATATGGGAATGGTCAA-GA 2532
Query 2712 GGAAATGGAGAGAAAAAGACTAA 2734
||||||||||| |||||||||||
Sbjct 2533 GGAAATGGAGACAAAAAGACTAA 2555
> Ahg492795 jgi|Araly1|492795|fgenesh2_kg.7__2228__AT4G20910.1
Length=2947
Score = 791 bits (428), Expect = 0.0
Identities = 856/1051 (81%), Gaps = 75/1051 (7%)
Strand=Plus/Plus
Query 1716 AGAACTCATCGAAAGCAATGAAGAGATAGAGTTTGAGGTGGGGAA-TGGTTCTATGAATC 1774
||| ||||| ||||||||||||||||||||||||||||| || || ||| || |||||||
Sbjct 1936 AGATCTCATTGAAAGCAATGAAGAGATAGAGTTTGAGGTAGG-AACTGGATCCATGAATC 1994
Query 1775 CACATCTTGAAGCAGTTGTTACTCA-ACTGGTTGTGGGCCAATATGCT-CGTTT--T-TT 1829
||||| ||||| ||| ||||||||| | || |||||| ||||| || | ||| | ||
Sbjct 1995 CACATATTGAATCAGCTGTTACTCAGA-TGACTGTGGGTGAATATTCTTCTTTTAGTATT 2053
Query 1830 AACTAA--TGC-GCCTGCTGAAGACTT-G-TTTGTGACTGCTGCCACTGGTACCCAGAGA 1884
| | || || |||||||| ||| | ||| || ||| ||| ||| ||| ||||
Sbjct 2054 ACCCCCCCTGATGC-TGCTGAAG-CTTTGATTT-TGGCTGTTGCTTCTGATACTGTGAGA 2110
Query 1885 GATC-GTTCACTTTTATCAGAT-GTCGCAGGTTTTGAAT-ACTGTGTACGTTTGTTGGGA 1941
| | | || ||| ||||||| ||| || |||| ||| || || ||| ||||||||||
Sbjct 2111 -ACCCGCTCGCTTCTATCAGAACGTC-CAAGTTTA-AATTACAGTATACTTTTGTTGGGA 2167
Query 1942 GTGAAAGGGCCAACAGAAAAACGAATTGAGGCGGATTTTTTCAAACCTTCACTTTCAAAA 2001
|||||||||||| ||||| ||||||| ||||||| ||||||||||||| ||||||| |||
Sbjct 2168 GTGAAAGGGCCATCAGAAGAACGAATGGAGGCGGCTTTTTTCAAACCTCCACTTTCTAAA 2227
Query 2002 CAGCGTCTTGAATATGTAGTGAAACATATTAA-AGAATCGTCAGCTTCTACTCT-GGTTG 2059
|||||| ||||||||| | |||||||||| || |||||| || |||||||| || |||||
Sbjct 2228 CAGCGTGTTGAATATGCACTGAAACATAT-AAGAGAATCATCCGCTTCTAC-CTTGGTTG 2285
Query 2060 ATTTTGGATGTGGATCTGGAAGTTTACTAG-CATCTATACTTGACTGTCCAACTTCACTT 2118
| |||||||| ||||||||||||||| ||| | ||| ||||||||| |||||||||||||
Sbjct 2286 ACTTTGGATGCGGATCTGGAAGTTTATTAGAC-TCTCTACTTGACTATCCAACTTCACTT 2344
Query 2119 CAAACCAT--TGCTGGCGTTGACATCTCACATAAGAGTCTTACCCGTGCTGCTAAGATTG 2176
|||||||| | | || |||||||| || | ||| ||||| |||||||||||||||| |
Sbjct 2345 CAAACCATCAT-C-GGTGTTGACATTTCGCCGAAGGGTCTTGCCCGTGCTGCTAAGAT-G 2401
Query 2177 CTACAT-TCAAAAATAAACAAGGGAGCTTGCAACCTCAAATCTACTTTACTCCATGATGG 2235
|||||| | |||| ||||||||| |||||||||| |||||||| || ||| |||||||
Sbjct 2402 CTACATAT-AAAACTAAACAAGGAAGCTTGCAACGTCAAATCTGCTACACTTTATGATGG 2460
Query 2236 TTCCATCCTTGAGTTTGATTCCAGGCTGCATGACATTGACATCGGCACTTGCTTAGAGGT 2295
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 2461 TTCCATCCTTGAGTTTGACTCCAGGCTGCATGACGTTGACATCGGCACTTGCTTAGAGGT 2520
Query 2296 CATTGAACACATGGAGGAGGATCAAGCCAGTCAATTCGGG-AAAACAGTTCTAAGCTTGT 2354
|||||||||||||| || ||||||||| || |||||||| |||| |||||| |||||||
Sbjct 2521 TATTGAACACATGGAAGAAGATCAAGCCTGTGAATTCGGGGAAAA-AGTTCTTAGCTTGT 2579
Query 2355 TTCGCCCGAAACTTCTGATTGTCTCCACACCAAAC-ATCGAGTACAACACAAATT-TCCA 2412
| | ||| || || ||||||||||| ||||||||| | ||||| |||||||| || ||||
Sbjct 2580 TCCACCCCAAGCTCCTGATTGTCTCAACACCAAACTA-CGAGTTCAACACAA-TTCTCCA 2637
Query 2413 TAAGTCTGGTCC-TCC-AAAC-CACCCAA-AAAACAGA-TCCATGTCTTCACAGCTACCA 2467
| || | | | || |||| || || |||||| | ||| ||| |||||| |||
Sbjct 2638 -ACGT-TC-TACATCAGAAACACAAG-AAGAAAACA-ACTCCGGGTC---ACAGCTTCCA 2689
Query 2468 AAATTCAGGAACCAAGACCACAAGTTTGAATGGACAAG-GAAACAGTTTAAGCAG-TGGG 2525
|||||||||||||| |||||||| |||||||||||||| ||| |||||||| || ||||
Sbjct 2690 AAATTCAGGAACCATGACCACAAATTTGAATGGACAAGAGAA-CAGTTTAA-CAACTGGG 2747
Query 2526 CATCTAAACTCGCTAAACGCCACAACTACAGCGTCTATTTTAGCGGTGTTGGTGGGTCTG 2585
| ||||| ||||| |||||||| |||||| | ||| | ||||||||||||||||||||||
Sbjct 2748 CCTCTAATCTCGCCAAACGCCATAACTACGGTGTCGAGTTTAGCGGTGTTGGTGGGTCTG 2807
Query 2586 GTAAAGGAGACCCCGGGTTTGCTTCTCAAATTGTTGTTTTTAGACGG-ATATCTTTGTCC 2644
|| ||| ||| ||||||||||||||||| || | |||||||| |||| | | ||| |
Sbjct 2808 GTGAAGTAGAACCCGGGTTTGCTTCTCAGATAGCTGTTTTTAAACGGGA-AGCTT---C- 2862
Query 2645 AACATAGTGGAGAAGGTCT-CAGAAGGCTCGATGCAGCCTTATAAAATCATATGGAAATG 2703
| | | || ||||| || | ||||| |||| ||||||| ||||||| |||||||| ||||
Sbjct 2863 ATC-T-GTTGAGAATGT-TGCAGAAAGCTCAATGCAGCGTTATAAAGTCATATGGGAATG 2919
Query 2704 GTCAAAGAGGAA-ATGGAGAGAAAAA-GACT 2732
| || || || ||||||| ||||| ||||
Sbjct 2920 G--AA-GA--AAGATGGAGATAAAAAAGACT 2945
Score = 675 bits (365), Expect = 0.0
Identities = 731/897 (81%), Gaps = 67/897 (7%)
Strand=Plus/Plus
Query 112 CTCTATCGTTGCCACTTGCAGCTACCAGAATTTTCTGTTGTATCAAATGTCTTCAAG-AG 170
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 263 CTCTATCGCTGCCACTTGCAGCTACCAGACTTTTCTGTTGTATCAAATGTCTTCAAGAAG 322
Query 171 AAAAAAGGATTCCGAACAATCTGCTGCTGAATTGGCTCTCGAGAAGCTAGGAATTCAGT- 229
|| |||||||| |||||||||||||||||||||||||| || |||||||| |||| ||
Sbjct 323 -AAGAAGGATTCTGAACAATCTGCTGCTGAATTGGCTCTTGACAAGCTAGGCATTC-GTC 380
Query 230 CTCAGGATGATGATGATGTTGATATAACTGTGGATGAAGCTTGGAAT-AATATCGTTGAA 288
|||| || ||||||| | | | |||||||||||||||||| || || || ||||
Sbjct 381 CTCA-GA--ATGATGA---T-CT-T-ACTGTGGATGAAGCTTGGGATGAA-ATTGTTGGC 430
Query 289 CGCATTAAGTATATATTTTCTGATGAGTTTCTTTCAGTTGATCATCCTCTAGGAGGTCAC 348
||||||||||||||||||||||||||||||||||||| ||| || ||||| |||| ||||
Sbjct 431 CGCATTAAGTATATATTTTCTGATGAGTTTCTTTCAGCTGAGCACCCTCTGGGAGCTCAC 490
Query 349 CTAAGGGCGGCATTGCAAAGGGATGGCGAACGTTGCGGATCACTTCCTGTTTCTGTCATT 408
|| || |||||||||| ||| ||||| |||||||| |||||| |||||||||||||||||
Sbjct 491 CTTAGAGCGGCATTGCGAAGAGATGGTGAACGTTGTGGATCAGTTCCTGTTTCTGTCATT 550
Query 409 GCTACATTTGATGCAAAGATTAACAGTCGCTGTAAAGTGATTGATCCTTCTGTAGAATCA 468
||||||||||||||||||||||||||||| |||||| | || ||||||||||| ||||||
Sbjct 551 GCTACATTTGATGCAAAGATTAACAGTCGTTGTAAAATTATCGATCCTTCTGTGGAATCA 610
Query 469 GATCCTATCTTG-CTCATGTCCTATGTCATGAAGGCTGCTGCAAAGTTGCCGGACTACAT 527
|||||| ||||| | ||| |||||||||||||||||| ||||||||||| | ||||||||
Sbjct 611 GATCCTTTCTTGGC-CATTTCCTATGTCATGAAGGCTTCTGCAAAGTTGTCAGACTACAT 669
Query 528 TGTTGTATCTCCGCATGTCGATTCACTCCGAAGGAAAAAACCGTATCCTCCAGCAACTAT 587
||||| ||||||||||| | | | ||||||||||||| | || ||| ||| || | |
Sbjct 670 TGTTGCATCTCCGCATG-C-A--C--TCCGAAGGAAAAATGCATACCCTTCAGAAATTGT 723
Query 588 TA-AAGCACTGGCTACT-AC-TCATGTGA------A-A-AGCATAAAAG-CTGAGGCTGT 635
| ||||||| |||||| | | || ||| | | || | | ||| | | ||||||
Sbjct 724 -AGAAGCACTAGCTACTCATGT-ATCTGATTCCCTACATAGAAGAGAAGTC-GCGGCTGT 780
Query 636 GCATTTACAATGTACCGTTGGCGGTGAAGAGGTTGTTAAGCCAG-TCACTCTTGATATTT 694
|| ||| ||||| | || ||| ||||||||| ||| || | |||||| | ||||
Sbjct 781 ATATATACCATGTA---T---CGATGAGGAGGTTGTTGAGCTAGAT-ACTCTTTACATTT 833
Query 695 CATCAGGTCGGTATTACTTGGATATTATTGCTGACAAG-CTTGGATTGAAGGATGGCAGC 753
|||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||||||
Sbjct 834 CATCAGACCGGCATTACTTGGATAGTATTGCTGA-AAGGCTCGGATTGAAAGATGGCAGC 892
Query 754 CAAGTGATGATATC-A--AGGACTATTGGCAAAA-CTTCCTCTGGCTATGAGTGTAGAGT 809
|||||||||||||| | |||||| |||| |||| | |||| ||| | |||||||||| |
Sbjct 893 CAAGTGATGATATCCAGCAGGACTTTTGG-AAAAGCATCCTGTGGTTCTGAGTGTAGATT 951
Query 810 ATA-TGCTGCCATTCCTAAGTTGAAGTCTTCCGATAATTCATG-GAAAGCC-CGTGAAAA 866
|| | ||| ||||| ||| ||||| || |||||||||| ||| ||| | || ||
Sbjct 952 GTACT-CTGATATTCCGAAG---AAGTCCTCTGATAATTCATCAGAA-GCCTC-TGGAA- 1004
Query 867 ACGTCCAA-TCATTGAATCATCACATCTTGAAAAGTCTCGGAATGCAAAAGCAAGTTTTG 925
|| ||| | | || ||||| ||| || |||| |||||||||||| ||||||||
Sbjct 1005 --GTTCAAATGAA-GACTCATCTCATATTAAAAAATCTCGGAATGCACGAGCAAGTTACA 1061
Query 926 TTTGTGGTGTAGATATTCACGGTGATGCGATCGTGGCATCTGTTGGTTACCCATGGA 982
|||||||| |||||||||||| ||||| ||| |||||||||||||||||| |||||
Sbjct 1062 TTTGTGGTCAAGATATTCACGGGGATGCAATCTTGGCATCTGTTGGTTACCGATGGA 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103148383460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5