BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20930.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329506 jgi|Araly1|329506|fgenesh1_pm.C_scaffold_7001733 953 0.0
> Ahg329506 jgi|Araly1|329506|fgenesh1_pm.C_scaffold_7001733
Length=1119
Score = 953 bits (516), Expect = 0.0
Identities = 554/573 (97%), Gaps = 0/573 (0%)
Strand=Plus/Plus
Query 523 AATTGGGAAAAGCCAGTCATGTTGGATGCTCCCGTCTCTGGAGGTGTTCTTGCTGCAGAA 582
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 547 AATTGGGAAAAGCCGGTCATGTTGGATGCTCCTGTCTCTGGAGGTGTTCTTGCTGCAGAA 606
Query 583 GCTGGTACACTTACTTTCATGGTTGGAGGTCCCGAAGATGCTTACTTAGCCGCTAGACCA 642
||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 607 GCTGGTACACTTACTTTCATGGTTGGAGGTCCCAAAGATGCTTACGTAGCTGCTAGACCA 666
Query 643 ATACTTCAGTCAATGGGCAGAACCTCCATCTACTGTGGTGGTTCAGGAAATGGATCTGCC 702
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 667 ATACTTCATTCAATGGGTAGAACCTCCATCTACTGTGGTGGTTCAGGAAATGGCTCTGCT 726
Query 703 GCAAAGATTTGTAACAATCTGGCAATGGCCGTGAGTATGCTCGGCACTTCAGAAGCCTTA 762
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 727 GCAAAGATTTGTAACAATTTGGCAATGGCTGTGAGTATGCTCGGCACTTCAGAAGCCTTA 786
Query 763 GCTCTTGGTCAGTCACTTGGAATATCTGCCAGTACTTTAACAGAAGTCTTAAACACATCT 822
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 787 GCTCTTGGTCAGTCACTTGGAATATCTGCGAGTACTTTAACAGAAGTGTTAAACACATCT 846
Query 823 AGTGGCCGTTGTTGGAGCAGTGACGCATACAATCCAGTTCCAGGAGTGATGAAAGGTGTG 882
|||||| | |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 847 AGTGGCAGATGTTGGAGTAGCGACGCATACAATCCAGTTCCAGGAGTGATGAAAGGTGTG 906
Query 883 CCATCTTCAAGGGATTACAATGGCGGTTTCGCCTCCAAACTTATGGCTAAAGACCTAAAC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 CCATCTTCAAGGGATTACAATGGCGGTTTCGCCTCCAAACTTATGGCTAAAGACCTAAAC 966
Query 943 CTCGCAGCAGCCTCAGCTGAAGAAGTTGGACACAAAAGCCCATTGATATCCAAAGCACAA 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CTCGCAGCAGCCTCAGCTGAAGAAGTTGGACACAAAAGCCCATTGATATCCAAAGCACAA 1026
Query 1003 GAAATTTACAAGAAGATGTGCGAGGAAGGACATGAAACGAAGGACTTCTCTTGTGTTTTC 1062
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1027 GAAATTTACAAGAAGATGTGCGAGGAAGGGCATGAAACGAAGGACTTCTCTTGTGTTTTC 1086
Query 1063 AGACACTTTTACAATGGGAAAGATGAGGTCTGA 1095
||||||||||||||||| |||||||||||||||
Sbjct 1087 AGACACTTTTACAATGGCAAAGATGAGGTCTGA 1119
Score = 725 bits (392), Expect = 0.0
Identities = 447/473 (95%), Gaps = 5/473 (1%)
Strand=Plus/Plus
Query 52 ATGGCGATTCGCAGAGCGCAAACTCTACTTTGTCTTTCTAAATTCAAAACCAATTTCGTG 111
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGATTCGCAGAGCGCAAACTCTACTTTGTCTTTCCAAATTCAAAACCAATTTCGTG 60
Query 112 TCTGGGTCGCTCCACCG---GTTCTCTTCTTCGTCTCAAAATTCAAATCAATTCCAGAAT 168
| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTTGGGTCGCTCCACCGATTATTCTCTTCGTCGTCTCAAAATTCAAATCAATTCCAGAAT 120
Query 169 GTTGGTTTCATAGGACTTGGAAATATGGGATTC-AGAATGGTGAATAATCTAATTAGAGC 227
|||||||| ||||||||||||||||||||| || |||||||||||||||||| ||| |||
Sbjct 121 GTTGGTTTTATAGGACTTGGAAATATGGGA-TCTAGAATGGTGAATAATCTAGTTAAAGC 179
Query 228 TGGATATAAAGTTACCGTTCATGACATAAACCGTGATGTTATGAAAATGTTCACTGAAAT 287
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 180 TGGATATAAAGTTACCGTTCATGACATAAACCGTCATGTTATGAAGATGTTCACCGAAAT 239
Query 288 GGGAGTCTCTTCTAGAGAAACTCCTTATGAAGTTGCACAAGATAGCGAAGTTGTGATTAC 347
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 GGGAGTCTCTGCTAGAGAAACTCCTTATCAAGTTGCACAAGATAGCGAAGTTGTGATTAC 299
Query 348 AATGTTGCCTTCATCATCTCATGTGATGGATGTGTACACAGGAACAAATGGGTTGCTTCT 407
||||||||||| || ||||| || ||||||||||||||||||||||||||| |||||||
Sbjct 300 CATGTTGCCTTCTTCGTCTCACGTTATGGATGTGTACACAGGAACAAATGGGCTGCTTCT 359
Query 408 TGGAGAAAATGATATAAGACCTGCTTTGTTTATAGATTCATCCACTATTGATCCACAAAC 467
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TGGAGAAAATGCTATAAGACCTGCTTTGTTAATAGATTCATCCACTATTGATCCACAAAC 419
Query 468 AACTCGAAAAATCTCACTTGCTGTTTCTAATTGTAATTTGAAAGAAAAGAGAG 520
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 420 AACTCGAAAAATCTCGCTTGCTGTTTCTAATTGTAATTTGAAAGAAAAGAGAG 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5