BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20960.1
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492791 jgi|Araly1|492791|fgenesh2_kg.7__2224__AT4G20960.1 2130 0.0
> Ahg492791 jgi|Araly1|492791|fgenesh2_kg.7__2224__AT4G20960.1
Length=1451
Score = 2130 bits (1153), Expect = 0.0
Identities = 1331/1418 (94%), Gaps = 8/1418 (1%)
Strand=Plus/Plus
Query 17 CACCGTTGATGTTAGGGTTTCGGCTGTATTCTCACCGCTGCTGAC-GGAGACGGCCCGAA 75
|||||||| |||||||||||||||||||||| | | ||||| | | |||||||||| |||
Sbjct 1 CACCGTTGTTGTTAGGGTTTCGGCTGTATTCCCGCAGCTGCCG-CTGGAGACGGCCTGAA 59
Query 76 TCCGCAATTTAATCTTCGAGGTTCGATTTTAGTGAAGAACAAGATTCAATAGTGATATGC 135
|||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 60 TCCGCAATTTAATCGTCGATTTTCAATTTTAGTCAAGAACAAGATTCAATAGTGATATGC 119
Query 136 AGATCTCATGTCTCCCAATTTCGATTCCTTCGATCACTCCTCGAACCTCAATTCCACTCT 195
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AGATCACATGTCTCCCAATTTCGATTCCTTCGATCACTCCTCGAACCTCAATTCCACTTT 179
Query 196 TACCATCACTCTCCTCAAATCCTCGCCGCATTTTCAACCTCACTTCACTTCAGAGCCCAA 255
|| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 180 TATCATCACTCTCCTCAAATCATCGCCGTATTTTCAACCTCACTTCACTTCAGAACCCAA 239
Query 256 ATCACTGTTTCTTCAAAAGATTACATAAATCTCAGACTGGTTTCAGCAATCCAGTTTTGG 315
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 ATCACAGTTTCTTCAAAAGATTACATAAATCTCAGACTGGTTTCAACAATCCAGTTTTGG 299
Query 316 CTGCCATGAGAAGAGAAGAAGATGTTGAAGTCGATGATTCGTTTTATATGA-GAAAGTGT 374
|| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 300 CTTCCATGAGAAGAGAAGAAGGTGTTGAAGTCGATGATTCGTTTTATATGAGGAAA-TGC 358
Query 375 GTGGAGCTAGCAAAAAGAGCAATTGGGTGTACAAGTCCTAATCCTATGGTAGGTTGTGTC 434
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTTGAACTAGCAAAGAGAGCAATTGGGTGTACAAGTCCTAATCCTATGGTAGGTTGTGTC 418
Query 435 ATTGTCAAAGATGGTGACATTGTTGGCCAAGGGTTTCATCCCAAAGCTGGTCAGCCTCAT 494
||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 ATTGTTAAAGACGGCGACATTGTTGGCCAAGGTTTTCATCCCAAAGCTGGTCAGCCTCAT 478
Query 495 GCTGAGGTGTTTGCTCTTAGAGATGCTGGAGAGTTAGCTGAGAATGCTACTGCTTATGTT 554
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 GCTGAGGTGTTTGCTCTTCGAGATGCTGGAGAGTTAGCTGAGAATGCCACTGCTTATGTT 538
Query 555 AGTTTGGAACCATGTAATCATTACGGAAGAACACCGCCGTGTACAGAAGCATTGATTAAG 614
|| ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||
Sbjct 539 AGCTTGGAACCATGTAATCATTACGGGAGAACGCCGCCGTGTACAGAGGCAATGATTAAG 598
Query 615 GCTAAGGTGAGAAGAGTTGTTA-TTGGGATGGTTGATCCGAATCCAATTGTTTTTTCTTC 673
|||||||||| |||||||| || | ||||||||||||||||||||||| |||| ||||||
Sbjct 599 GCTAAGGTGAAAAGAGTTG-TAGTCGGGATGGTTGATCCGAATCCAATCGTTTCTTCTTC 657
Query 674 GGGTATTAGTCGGTTGAAAGATGCTGGAATCGATGTTACTGTGAGTGTTGAAGAAGAGTT 733
|||||||||||||||||||| |||||||| ||||| |||||| ||||||||||||||||
Sbjct 658 AGGTATTAGTCGGTTGAAAGACGCTGGAATTGATGTCACTGTGGGTGTTGAAGAAGAGTT 717
Query 734 ATGCAAGAAGATGAATGAGGGATTCATCCATCGAATGTTAACAGGGAAGCCTTTTCTCGC 793
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 718 ATGCAAGAAGATGAATGAGGGATTCATCCATCGCATGTTAACAGGGAAGCCTTTCCTTGC 777
Query 794 CCTCAGGTATTCTATGTCTGTCAATGGTTGTTTGCTAGACAAGATTGGGCAAGGGGCTTC 853
||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 778 CCTCAGGTATTCTATGTCTGTCAATGGTTGTTTTCTGGACAAGATTGGGGAAGGGGCTTC 837
Query 854 GGATAGTGGTGGATACTACTCGAAGCTATTGCAGGAATATGATGCGATAATACTTTCTTC 913
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 838 GGATAGTGGTGGATACTACTCGAAGCTATTACAGGAATATGATGCGATAATACTTTCATC 897
Query 914 CTCGTTATCGGATGAACTCTCGAGCATTTCTTCACAAGAAGCTATTAATGTTTCGATCCA 973
|||||||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||||
Sbjct 898 CTCGTTATCGGATGAACTCTCGAGTATTTCCTCACAAGAAGCTACTAACGTTTCGATCCA 957
Query 974 ACCTATTCAGATCATAGTAGCTAGCAATGCACAACAGTCTCATATCCTTGCTTCTTCCCA 1033
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 958 ACCTATTCAAATCATAGTAGCTAGCAATGCACAACAGTCTCCTATCCTTGCTTCTTCCAA 1017
Query 1034 CACTGTGGAAGAATCGGGTCCAAAAGTTGTAGTTTTCACCGCAAAGGAATCGGTTGCAGA 1093
||||| ||||||||||||||||||||||||| | |||||||||||||||| |||||||||
Sbjct 1018 CACTGCGGAAGAATCGGGTCCAAAAGTTGTACTGTTCACCGCAAAGGAATTGGTTGCAGA 1077
Query 1094 ATCCGGAATCAGTAGTAGCGGGGTCGAAACCGTAGTATTGGAAAAGATAAACTTGGATTC 1153
|||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||
Sbjct 1078 ATCCGGAATCAGTAGTAGCGGGGTTGAAACTGTAGTACTGGAAAAGATAAATTTGGATTC 1137
Query 1154 CATTTTGGATTATTGTTACAACCGTGGACTATGCAGTGTCTTGTTAGATTTGAGGGGGAA 1213
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CATTCTGGATTACTGTTACAACCGTGGACTATGCAGTGTCTTGTTAGATTTGAGGGGGAA 1197
Query 1214 CGTCAAAGACCTTGAAGT-TCTTCTGAGAGATGGATTTGAGCAGAAACTATTGCAGAAAG 1272
|||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1198 CGTCAAAGACCTTGAAGTGT-TTCTGAGAGATGGATTTGAACAGAAACTATTGCAGAAAG 1256
Query 1273 TAATTATTGAGGTCTTGCCGGAATGGAGCACAAAAGATGAGAGACAGATCGCGTCGATGA 1332
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1257 TAATTATTGAGGTTTTGCCGGAATGGAGCACAAAAGATGAGAGACAGATTGCATCGATGA 1316
Query 1333 AGTGGTTAGAATCAAAGCATGTGAAAGATTTGCAGTCTAAGCAATTAGGTGGAAGCGTTT 1392
|||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 AGTGGTTAGAATCAAAACAGGTGAAAGATTTGCAGTCTAAGCAATTAGGTGGAAACGTTT 1376
Query 1393 TGCTAGAGGGCTATTTTTGATGTTTTCATGTATGAATG 1430
|||||||||||||| ||||||||||| |||||||||||
Sbjct 1377 TGCTAGAGGGCTATCTTTGATGTTTTGATGTATGAATG 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57135367500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5