BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G20990.1
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329501 jgi|Araly1|329501|fgenesh1_pm.C_scaffold_7001728 1280 0.0
Ahg329500 jgi|Araly1|329500|fgenesh1_pm.C_scaffold_7001727 632 1e-180
> Ahg329501 jgi|Araly1|329501|fgenesh1_pm.C_scaffold_7001728
Length=804
Score = 1280 bits (693), Expect = 0.0
Identities = 767/804 (95%), Gaps = 0/804 (0%)
Strand=Plus/Plus
Query 1 ATGGATACCAACGCAAAAACAATTTTCTTCATGGCTATGTGTTTCATCTATCTATCTTTC 60
|||||| ||||||| ||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 1 ATGGATCCCAACGCGAAAACAATTTTCTTCTTGGCTATGTTTTTCATCTATTTATCTTTC 60
Query 61 CCTAATATTTCACACGCTCATTCTGAAGTCGACGACGAAACTCCATTTACTTACGAACAA 120
|||||||| |||| ||| ||| | ||||| |||||||||||||||||||| |||||||||
Sbjct 61 CCTAATATCTCACTCGCACATACGGAAGTTGACGACGAAACTCCATTTACATACGAACAA 120
Query 121 AAAACGGAAAAGGGACCAGAGGGATGGGGCAAAATAAATCCGCACTGGAAAGTTTGTAAC 180
||||| ||||| ||||| ||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 121 AAAACAGAAAAAGGACCCGAGGGATGGGGAAAAATAAATCCGCAATGGAAAGTCTGTAAC 180
Query 181 ACCGGAAGATATCAATCCCCGATCGATCTTACTAACGAAAGAGTCAGTCTTATTCATGAT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACCGGAAGATATCAATCGCCGATCGATCTTACTAACGAAAGAGTCAGTCTTATTCATGAT 240
Query 241 CAAGCATGGACAAGACAATATAAACCAGCTCCGGCTGTAATTACAAACAGAGGCCATGAC 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CAAGCATGGACAAGACAATATAAACCAGCTCCGGCTGTAATTACAAATAGAGGCCATGAC 300
Query 301 ATTATGGTATCATGGAAAGGAGATGCTGGGAAGATGACAATACGGAAAACGGATTTTAAT 360
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 301 ATTATGGTATCATGGAAAGGAGATGCTGGGAAAATAACAATACGTAAAACGGATTTTAAA 360
Query 361 TTGGTGCAATGCCATTGGCATTCACCTTCTGAGCATACCGTTAACGGAACTAGGTACGAC 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 361 TTGGTGCAATGCCATTGGCATTCACCCTCTGAGCATACCGTTAACGGAACTAGCTACGAC 420
Query 421 CTAGAGCTTCACATGGTTCACACGAGTGCACGAGGCAGAACTGCGGTTATCGGAGTTCTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTAGAGCTTCACATGGTTCACACGAGTGCACGAGGCAGAACTGCGGTTATCGGAGTTCTT 480
Query 481 TACAAATTAGGCGAACCTAATGAATTCCTCACCAAGCTACTAAATGGAATAAAAGCAGTG 540
|||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TACAGATTAGGGGAACCTAATGAATTCCTCACAAAGCTACTAAATGGAATAAAAGCAGTG 540
Query 541 GGAAATAAAGAGATAAATCTAGGGATGATTGATCCACGAGAGATTAGGTTTCAAACAAGA 600
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 GGAAATAAAGAGATAAATCTAGGGATGATTGATCCTCGAGAGATTAGGTTTCAAACCAGA 600
Query 601 AAATTCTATAGATACATTGGCTCTCTCACTGTTCCTCCTTGCACTGAAGGCGTCATTTGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 AAATTCTATAGATACATTGGCTCTCTCACTGTTCCTCCTTGCACTGAAGGCGTTATTTGG 660
Query 661 ACTGTCGTCAAAAGGGTGAACACAATATCAATGGAGCAAATTACAGCTCTTAGGCAAGCC 720
||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||
Sbjct 661 ACTGTCGTCAAAAGGGTGAACACAATATCAACGGAGCAAATTGCAGCTCTGAGGGAAGCC 720
Query 721 GTTGACGATGGATTTGAGACAAATTCAAGACCGGTTCAAGACTCAAAGGGAAGATCAGTT 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTGACGATGGGTTTGAGACAAATTCAAGACCGGTTCAAGACTCAAAGGGAAGATCAGTT 780
Query 781 TGGTTCTATGATCCAAATGTTTGA 804
||||||||||||||||||||||||
Sbjct 781 TGGTTCTATGATCCAAATGTTTGA 804
> Ahg329500 jgi|Araly1|329500|fgenesh1_pm.C_scaffold_7001727
Length=705
Score = 632 bits (342), Expect = 1e-180
Identities = 578/690 (84%), Gaps = 23/690 (3%)
Strand=Plus/Plus
Query 1 ATGGATACCAACGCAAAAACAATTTTCTTCATGGCTA-TGTGTTTCATCTATCTA-TCTT 58
|||||| ||||| |||||||||||||||| | | || ||| |||||| || || | ||
Sbjct 1 ATGGATCCCAACACAAAAACAATTTTCTTTTTTG-TAGTGTTTTTCATGGATTTATTTTT 59
Query 59 TCCCTAATATTTCACACGCTC-AT--TC-TGAAGTCGACGACGAAA-CTCCATTTACTTA 113
|||| ||||||| || || || || || |||| ||| | || ||| | | |||||| ||
Sbjct 60 TCCC-AATATTTTACTCG-TCTATGCTCGTGAAATCGGCAAC-AAACCACTATTTACATA 116
Query 114 CGAACAAAAAACGGAAAAGGGACCAGAGGGATGGGGCAAAATAAATCCGCACTGGAAAGT 173
| |||||||||| ||||| ||||||| || |||||||||| |||| || || ||||||||
Sbjct 117 CAAACAAAAAACAGAAAAAGGACCAGCGGAATGGGGCAAATTAAACCCTCAATGGAAAGT 176
Query 174 TTGTAACACCGGAAGATATCAATCCCCGATCGATCTTACTA-ACGAAAGAGTCAGTCTTA 232
||||| ||| |||| || |||||| ||||| ||||| || | ||||||||||||||||||
Sbjct 177 TTGTAGCACGGGAAAATTTCAATCTCCGATTGATCTCAC-AGACGAAAGAGTCAGTCTTA 235
Query 233 TTCATGATCAAGCATGGA-CAAGACAATATAAACCAGCTCCGGCTGTAATTACAAA-CAG 290
||||||| ||||| | || ||| ||| || ||||||||| |||||| ||| |||| ||
Sbjct 236 TTCATGACCAAGCCTTGAGCAA-ACATTACAAACCAGCTTTGGCTGTTATT-CAAAGTAG 293
Query 291 AGGCCATGACATTATGGTATCATGGAAAGGAGATGCTGGGAAGATGACAATACGGAAAAC 350
||| |||||| |||||||||| ||||||| |||||| || || || ||||||| ||||
Sbjct 294 AGGACATGACGTTATGGTATCGTGGAAAGAAGATGCAGGAAAAATAACAATACATCAAAC 353
Query 351 GGATTTTAATTTGGTGCAATGCCATTGGCATTCACCTTCTGAGCATACCGTTAACGGAAC 410
||||| ||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 354 GGATTATAAATTGGTGCAGTGCCATTGGCATTCACCGTCTGAGCATACCATTAACGGAAC 413
Query 411 TAGGTACGACCTAGAGCTTCACATGGTTCACACGAGTGC-ACGAGGCAGAACTGCGGTTA 469
||| ||||||||||||||||||||||||||||||||||| | | |||| ||| || ||
Sbjct 414 TAGTTACGACCTAGAGCTTCACATGGTTCACACGAGTGCTA-GTGGCAAAACCGCAGTGG 472
Query 470 TCGGAGTTCTTTACAAATTAGGCGAACCTAATGAATTCCTCACCAAGCTACTAAATGGAA 529
| ||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||
Sbjct 473 TTGGAGTTCTTTATAAATTAGGTGAACCTGATGAATTCCTCACAAAGCTACTAAATGGAA 532
Query 530 TAAAAGCAGTGGGAAATAAAGAGATAAATCTAGGGAT-GATTGATCCACGAGAGATTAGG 588
|||||| ||| ||||| |||||||| |||||||| || | | ||||| ||||| |||||
Sbjct 533 TAAAAGGAGTAGGAAAAAAAGAGATGAATCTAGGAATTG-TGGATCCTCGAGATATTAGA 591
Query 589 TTTCAAAC-AAGAAAATTCTATAGATACATTGGCTCTCTCACTGTTCCTCCTTGCACTGA 647
||| |||| || || ||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 592 TTTGAAACCAACAAC-TTCTATAGATACATTGGCTCTCTCACTATTCCTCCATGCACCGA 650
Query 648 AGGCGTCATTTGGACTGTCGTCAAAAGGGT 677
|||||| ||||||||||||| ||||||||
Sbjct 651 AGGCGTTATTTGGACTGTCGAGAAAAGGGT 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29697752343
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5