BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21000.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329500 jgi|Araly1|329500|fgenesh1_pm.C_scaffold_7001727 1081 0.0
Ahg329501 jgi|Araly1|329501|fgenesh1_pm.C_scaffold_7001728 665 0.0
> Ahg329500 jgi|Araly1|329500|fgenesh1_pm.C_scaffold_7001727
Length=705
Score = 1081 bits (585), Expect = 0.0
Identities = 668/708 (94%), Gaps = 6/708 (1%)
Strand=Plus/Plus
Query 1 ATGGATGCCAACACAAAAACAATTTTATTTTTTGTAGTGTTCTTCATCGATTTA-TTTTC 59
|||||| ||||||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct 1 ATGGATCCCAACACAAAAACAATTTTCTTTTTTGTAGTGTTTTTCATGGATTTATTTTTT 60
Query 60 CCCTAATATTTTATTCGTTTATGCTCGTGAAATCGGCAACAAACCGCTATTTACATACAA 119
||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 CCC-AATATTTTACTCGTCTATGCTCGTGAAATCGGCAACAAACCACTATTTACATACAA 119
Query 120 ACAAAAAACAGAGAAAGGACCAGCGGAATGGGGCAAATTAGACCCTCAATGGAAAGTTTG 179
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 ACAAAAAACAGAAAAAGGACCAGCGGAATGGGGCAAATTAAACCCTCAATGGAAAGTTTG 179
Query 180 TAGCACCGGAAAAATTCAATCTCCGATTGATCTCACTGACGAAAGAGTCAGTCTTATTCA 239
|||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TAGCACGGGAAAATTTCAATCTCCGATTGATCTCACAGACGAAAGAGTCAGTCTTATTCA 239
Query 240 TGATCAAGCCTTGAGTAAACATTACAAACCAGCTTCGGCTGTAATTCAAAGTAGAGGACA 299
||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 240 TGACCAAGCCTTGAGCAAACATTACAAACCAGCTTTGGCTGTTATTCAAAGTAGAGGACA 299
Query 300 TGACGTTATGGTATCGTGGAAAGGAGATGGTGGGAAAATAACAATACATCAAACGGATTA 359
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 300 TGACGTTATGGTATCGTGGAAAGAAGATGCAGGAAAAATAACAATACATCAAACGGATTA 359
Query 360 TAAATTGGTGCAGTGCCATTGGCATTCACCGTCTGAGCATACCATTAACGGAACTAGCTA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 TAAATTGGTGCAGTGCCATTGGCATTCACCGTCTGAGCATACCATTAACGGAACTAGTTA 419
Query 420 TGACCTAGAGCTTCACATGGTTCACACGAGTGCTAGTGGCAAAACCACTGTGGTTGGAGT 479
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 420 CGACCTAGAGCTTCACATGGTTCACACGAGTGCTAGTGGCAAAACCGCAGTGGTTGGAGT 479
Query 480 TCTTTATAAATTAGGTGAACCTGATGAATTCCTCACAAAGATACTAAATGGAATAAAAGG 539
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 480 TCTTTATAAATTAGGTGAACCTGATGAATTCCTCACAAAGCTACTAAATGGAATAAAAGG 539
Query 540 AGTAGGGAAAAAAGAGATAGA-TCTAGGAATCGTGGATCCTCGAGATATTAGATTTGAAA 598
|||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 540 AGTAGGAAAAAAAGAGAT-GAATCTAGGAATTGTGGATCCTCGAGATATTAGATTTGAAA 598
Query 599 CCAACAATTTCTATAGATACATTGGCTCTCTCACTATTCCTCCATGCACCGAAGGCGTTA 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CCAACAACTTCTATAGATACATTGGCTCTCTCACTATTCCTCCATGCACCGAAGGCGTTA 658
Query 659 TTTGGACCGTCCAGAAAAGGGTATTATAttttttttGTTTCTGTTATA 706
||||||| ||| ||||||||||||| ||||||| ||||| ||||||
Sbjct 659 TTTGGACTGTCGAGAAAAGGGTATTGTATTTTTC--GTTTCAGTTATA 704
> Ahg329501 jgi|Araly1|329501|fgenesh1_pm.C_scaffold_7001728
Length=804
Score = 665 bits (360), Expect = 0.0
Identities = 584/690 (85%), Gaps = 23/690 (3%)
Strand=Plus/Plus
Query 1 ATGGATGCCAACACAAAAACAATTTTATTTTTTG-TAGTGTTCTTCATCGATTTAT-TTT 58
|||||| ||||| | ||||||||||| || || | || |||| |||||| |||||| |||
Sbjct 1 ATGGATCCCAACGCGAAAACAATTTTCTTCTTGGCTA-TGTTTTTCATCTATTTATCTTT 59
Query 59 CCCCTAATATTTTATTCGTTTATGCTCGTGAAATCGGCAAC-AAACCGCTATTTACATAC 117
||||||||| | | ||| || || ||| | | | || ||| | | ||||||||||
Sbjct 60 -CCCTAATATCTCACTCGCACAT--ACG-GAAGTTGACGACGAAA-CTCCATTTACATAC 114
Query 118 AAACAAAAAACAGAGAAAGGACCAGCGGAATGGGGCAAATTAGACCCTCAATGGAAAGTT 177
||||||||||||| |||||||| | || |||||| ||| || | || |||||||||||
Sbjct 115 GAACAAAAAACAGAAAAAGGACCCGAGGGATGGGGAAAAATAAATCCGCAATGGAAAGTC 174
Query 178 TGTAGCACCGGAAAAAT-TCAATCTCCGATTGATCTCACTGACGAAAGAGTCAGTCTTAT 236
|||| |||||| || || |||||| ||||| ||||| ||| |||||||||||||||||||
Sbjct 175 TGTAACACCGG-AAGATATCAATCGCCGATCGATCTTACTAACGAAAGAGTCAGTCTTAT 233
Query 237 TCATGATCAAGCCTTGAGTAA-ACATTACAAACCAGCTTCGGCTGTAATT-CAAAGTAGA 294
|||||||||||| | || || ||| || ||||||||| ||||||||||| |||| ||||
Sbjct 234 TCATGATCAAGCATGGA-CAAGACAATATAAACCAGCTCCGGCTGTAATTACAAA-TAGA 291
Query 295 GGACATGACGTTATGGTATCGTGGAAAGGAGATGGTGGGAAAATAACAATACATCAAACG 354
|| |||||| |||||||||| ||||||||||||| ||||||||||||||||| | |||||
Sbjct 292 GGCCATGACATTATGGTATCATGGAAAGGAGATGCTGGGAAAATAACAATACGTAAAACG 351
Query 355 GATTATAAATTGGTGCAGTGCCATTGGCATTCACCGTCTGAGCATACCATTAACGGAACT 414
|||| |||||||||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct 352 GATTTTAAATTGGTGCAATGCCATTGGCATTCACCCTCTGAGCATACCGTTAACGGAACT 411
Query 415 AGCTATGACCTAGAGCTTCACATGGTTCACACGAGTGCTA-GTGGCAAAACCACTGTGGT 473
||||| |||||||||||||||||||||||||||||||| | | |||| ||| | || |
Sbjct 412 AGCTACGACCTAGAGCTTCACATGGTTCACACGAGTGC-ACGAGGCAGAACTGCGGTTAT 470
Query 474 TGGAGTTCTTTATAAATTAGGTGAACCTGATGAATTCCTCACAAAGATACTAAATGGAAT 533
||||||||||| | |||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 471 CGGAGTTCTTTACAGATTAGGGGAACCTAATGAATTCCTCACAAAGCTACTAAATGGAAT 530
Query 534 AAAAGGAGTAGGGAAA-AAAGAGATAGATCTAGGAATCG-TGGATCCTCGAGATATTAGA 591
||||| ||| |||||| ||||||||| ||||||| || | | ||||||||||| |||||
Sbjct 531 AAAAGCAGT-GGGAAATAAAGAGATAAATCTAGGGAT-GATTGATCCTCGAGAGATTAGG 588
Query 592 TTTGAAACCA-ACAATTTCTATAGATACATTGGCTCTCTCACTATTCCTCCATGCACCGA 650
||| |||||| | |||| ||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 589 TTTCAAACCAGAAAATT-CTATAGATACATTGGCTCTCTCACTGTTCCTCCTTGCACTGA 647
Query 651 AGGCGTTATTTGGACCGTCCAGAAAAGGGT 680
||||||||||||||| ||| ||||||||
Sbjct 648 AGGCGTTATTTGGACTGTCGTCAAAAGGGT 677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5