BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21010.1
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890092 jgi|Araly1|890092|Al_scaffold_0007_2078 1051 0.0
Ahg492835 jgi|Araly1|492835|fgenesh2_kg.7__2268__AT4G20330.1 676 0.0
> Ahg890092 jgi|Araly1|890092|Al_scaffold_0007_2078
Length=858
Score = 1051 bits (569), Expect = 0.0
Identities = 754/840 (90%), Gaps = 26/840 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTGCGGGAGCAGCTTGATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60
|||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCTACAGGAGCAGCTAAATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60
Query 61 CTTTCGAGCATT-T--CTTCTTCAAGAACGGC-CCTTTCGAGATCATACGTGCCTGCAGC 116
|||||||||||| | ||||||||||||||| |||| |||| |||| ||| ||||||||
Sbjct 61 CTTTCGAGCATTATTGCTTCTTCAAGAACGGGGCCTT-CGAGGTCATCCGTACCTGCAGC 119
Query 117 AACAACCAGTCAGAAGCCTAATGTATTTCGTGGCAAGTTTTCAGAAAACACAAAGCAACT 176
||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||
Sbjct 120 AACAACCAGTCAGAAGCCTAATGCAGTTCGTGGCAAGTTTTCAGAAAATACAAAGCAGCT 179
Query 177 TCAGCACATTACCAACATAAGAAACAGTGCTGTTGGAGCTCAAATGAAGATTGTCATTGA 236
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TCAGCACATTAACAACATAAGAAACAGTGCTGTTGGAGCTCAAATGAAGCTTGTCATTGA 239
Query 237 TCTTTTGTTTAAGACAAGGCTAGCTTATACGGCAGAGCAAATAAATGAAGCTTGTTACGT 296
||||||| ||||| | |||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 240 TCTTTTGCTTAAG-C----CTAGCT-ATACGGCGGAGCAAATAAATGAAGCTTGTTATGT 293
Query 297 TGATATG-CATAACAACAAGGCTGTTTTTGATAGTTTGAGGAAGAATCCTAAAGTGCATT 355
||||||| | | ||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 294 TGATATGAC-TGCCAATAAGGCTGTTTTTAATAGTTTGAGGAAGAATCCGAAAGTGCATT 352
Query 356 ATGACGGAAGA--A-GGTTCTCTTATAAGGCTACGCACAATATCAAGGACAAGAAGCAAC 412
||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 353 ATGACGGAAGATCAAGGTTCTCTTATAAGGCTACGCACGATATCAAGGACAAGAAGCAGC 412
Query 413 TTCTTTCGTTTGTGAATAAATCAGATAAGGTGATTGATGTG-TCTGATCTCAAAGATGCT 471
|||||||||||||||||||||| ||| |||||||||||| | ||||||||||||||||
Sbjct 413 TTCTTTCGTTTGTGAATAAATCCTCTAATGTGATTGATGTGGT-TGATCTCAAAGATGCT 471
Query 472 TACCCGAATGTAATGGAAGATTTGAAGTCTCTAAAATCTTCAGGAGAAATCTTCTGGTTG 531
||||| ||||| |||||||||||| || || | ||| |||||||||| ||||||||||||
Sbjct 472 TACCCTAATGTCATGGAAGATTTGCAGGCTTTGAAAGCTTCAGGAGACATCTTCTGGTTG 531
Query 532 CTATCAAACACTGATTCAAAAGAGGGCACTGTGTATCGAAATAATATGGAGTATCCGAAG 591
| ||||||||||| |||||||||||| | |||||||| |||| || | |||||||||||
Sbjct 532 CCATCAAACACTGGTTCAAAAGAGGGTATTGTGTATCCAAATGATTTAAAGTATCCGAAG 591
Query 592 ATTGATGACGAGCTTAAAGCTCTATTCCGTGACAT---CATCCCGAGCGACATGCTTGAG 648
||||||||||| ||||||||||| ||||| ||||| ||| |||||||||||||||||
Sbjct 592 ATTGATGACGAACTTAAAGCTCTTTTCCGCGACATAGACATTCCGAGCGACATGCTTGAC 651
Query 649 GTGGAGAAGGAGTTGCTGAAGATTGGTTTGAAGCCAGCCACAAACATTGCAGAGAGGAGA 708
|||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||||
Sbjct 652 GTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGGCGACAAACACTGCAGAGAGGAGA 711
Query 709 GCTGCTGAACAGCTCCATGGCGTATCGAATAAACC-AAAGGATAAGAAGAAGAAGAA-AA 766
||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||
Sbjct 712 GCTGCTGCACAGCTCCATGGCGTATCGAATAAACCGAAAG-ATAAGAAGAAGAAGAAGAA 770
Query 767 A-A-GAGATCACCAACAGAACCAAACTCACCAATTCCCATATGCTCGAGCTCTTCCAGAG 824
| | ||||||| ||| |||||||||||||||||||||||||| | |||||||||||||||
Sbjct 771 ACAAGAGATCAGCAAGAGAACCAAACTCACCAATTCCCATATTCCCGAGCTCTTCCAGAG 830
> Ahg492835 jgi|Araly1|492835|fgenesh2_kg.7__2268__AT4G20330.1
Length=1096
Score = 676 bits (366), Expect = 0.0
Identities = 703/857 (82%), Gaps = 57/857 (7%)
Strand=Plus/Plus
Query 1 ATGGCTTTGCGGGAGCAGCTTGATAAGTTCAATAAACAGCAAGAGAAATGCCAATCTACG 60
|||||||| ||||||||| ||||| ||||| |||||||||| ||||||||||||||||
Sbjct 77 ATGGCTTTAAAGGAGCAGCTGGATAAATTCAACAAACAGCAAGTGAAATGCCAATCTACG 136
Query 61 CTTTCGAGCATTTCTTCTTC------AAGAAC-GGCCCTTTCGA-G-A-TC-AT-AC-GT 107
|| ||||||||| ||||||| |||||| || | ||||| | | || | | |
Sbjct 137 CTATCGAGCATTGCTTCTTCAAGAGAAAGAACAGGGTC-TTCGAGGCAGTCTGTGCCTTT 195
Query 108 GCCTGCAGCAA-CAACCAGTCAGAAGCCTAATGTATTTCGTGGCAAGTTTTCAGAA-AAC 165
|||||| |||| || ||| |||||||| ||| | || || |||||||||| || |
Sbjct 196 GCCTGCGGCAATCAGTCAG-AAGAAGCCTGATGCAGCTCCTGTCAAGTTTTCA-AACGAT 253
Query 166 ACAAAGCAACTTCAGCA-CATTACCAACATAAGAAACAG-TGCTGTTGGAGCTCAAATGA 223
|| ||| ||||||| | |||| |||||| ||||| || | |||||||||||||||| |
Sbjct 254 ACCGAGCGACTTCAG-ATTATTAACAACATTAGAAA-AGCTCCTGTTGGAGCTCAAATCA 311
Query 224 AGATTGTCATTGATCTTTTGTTTAAGACAAGGCTAG-CTTATACGGCAGAGCAAATAAAT 282
|| ||||||||||||| | ||| ||| |||||||| |||| || ||||||||||||||
Sbjct 312 AGCGTGTCATTGATCTTCTCTTTGAGAAAAGGCTAGCCTTA-ACTCCAGAGCAAATAAAT 370
Query 283 GAAGCTTGT-T-ACGTTGATATGCATAACAACAAGGCTGTTTTTGATAGTTTGAGGAAGA 340
||| |||| | | |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 371 GAA--TTGTGTCATGTTGATATGCATGCCAATAAGGCTGTTTTTGATAGTTTGAGGAAGA 428
Query 341 ATCCTAAAGTGCATTATGACGGAAGAAGGTTCTCTTATAAGGCTACGCACAATATCAAGG 400
|||| |||| ||||||||| |||||||||||||||||||||||||| ||| || ||||||
Sbjct 429 ATCCGAAAGCGCATTATGATGGAAGAAGGTTCTCTTATAAGGCTACACACGATGTCAAGG 488
Query 401 ACAAGAAGCAACTTCTTTCGTTTGTGAATAAAT-CA--GATAAGGTGATTGATGTG-TCT 456
||||||| || ||||||||||| |||| ||||| | ||| || ||||| ||| | |
Sbjct 489 ACAAGAACCAGCTTCTTTCGTTGGTGAGTAAATACCCTGAT--GG-GATTGCGGTGGT-T 544
Query 457 GATCTCAAAGATGCTTACCCGAATGTAATGGAAGATTTGAAGTCTCTAAAAT-CTTCAGG 515
||||||||||| ||||||||||||||||| || ||||||||| |||| | | ||||||
Sbjct 545 GATCTCAAAGACGCTTACCCGAATGTAATAGAGGATTTGAAGGCTCTGAG-TGCTTCAG- 602
Query 516 AGAAATCTTCTGGTTGCTATCAAACACTGATTCAAAAGAGGGCACTGTGTATCGAAATAA 575
|| | | |||||||||||||||| | | || |||||| || || ||| | ||||||
Sbjct 603 AGGA--CATCTGGTTGCTATCAAA---T--T-CACAAGAGGACATTGCGTACCCAAATAA 654
Query 576 TATGGAGTATCCGA--A-GATTGATGACGAGCTTAAAGCTCTATTCCGTGACAT---CAT 629
| | ||| | || | | |||||||||| |||||||||||||||||||||| |||
Sbjct 655 TTTCAAGTGTGAGATTAAGGTTGATGACGAATTTAAAGCTCTATTCCGTGACATAGACAT 714
Query 630 CCCGAGCGACATGCTTGAGGTGGAGAAGGAGTTGCTGAAGATTGGTTTGAAGCCAGCCAC 689
||||||||||||||| || |||||||||||| |||||||||||||||||||||| || ||
Sbjct 715 CCCGAGCGACATGCTGGACGTGGAGAAGGAGCTGCTGAAGATTGGTTTGAAGCCGGCGAC 774
Query 690 AAACATTGCAGAGAGGAGAGCTGCTGAACAG-CTCCATGGCGTATCGAATAAACC-AAAG 747
||||| |||||||||||||||||||| |||| | ||||||||||||||||||||| ||||
Sbjct 775 AAACACTGCAGAGAGGAGAGCTGCTGCACAGAC-CCATGGCGTATCGAATAAACCGAAAG 833
Query 748 GATAAGAAGAAGAAGAAAAAAGAGATCACCAACAGAACCAAACTCACCAATTCCCATATG 807
||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||| |
Sbjct 834 -ATAAGAAGAAGAAGAAACAAGAGATCAGCAAGAGAACCAAACTCACCAATGCCCATCTT 892
Query 808 CTCGAGCTCTTCCAGAG 824
| |||||| ||||||||
Sbjct 893 CCCGAGCTTTTCCAGAG 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31794512778
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5