BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21020.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492785 jgi|Araly1|492785|fgenesh2_kg.7__2218__AT4G21020.1 1384 0.0
> Ahg492785 jgi|Araly1|492785|fgenesh2_kg.7__2218__AT4G21020.1
Length=974
Score = 1384 bits (749), Expect = 0.0
Identities = 897/967 (93%), Gaps = 15/967 (2%)
Strand=Plus/Plus
Query 56 GTTTTTCTTGATTTGATAAAAATGGCGGCCATGCAACTAACAAGAACCGCTCTAGTTGGT 115
||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 11 GTTTTTCTTGATTTGATGAAAATGGCAGCCATGCAACTAACAAGAACCGCTCTCTTTGGT 70
Query 116 CTCTCAAAGGCTTTCCCTGGAATCAAAGCTCCGGCTACTCTCGCTGCTTCTTCCCGGAAA 175
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 71 CTCTCAAAGGCTTTCCCTGGAATCAAAGCTCCGCCTACTCTCGTTGCTTCTACCCGGAAA 130
Query 176 GTCTCTCGCATCTGCTTCGCCACCTCCGTTAGCCAAAACGAGGGAAGAGATCCTCTAGAT 235
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 131 GTCTCTCGCGTCTGCTTCGCCTCCTCCGTTAGCCAAAACGAGGGAAGAGATCCTCTAGAT 190
Query 236 AACGCTAGAGACTCGAGGGCTGATTCAGCTTACGGATCGAAGAAATGGAGGGAGGACACC 295
|||||||| |||||||||||||||||| ||||||| || ||||||||||||||||| |||
Sbjct 191 AACGCTAGGGACTCGAGGGCTGATTCATCTTACGGGTCAAAGAAATGGAGGGAGGATACC 250
Query 296 GGAGAATACTATGCCCAAGCGGCTAAAGACAAGGCTAACGAAGGAGCAAGCAAAGCTGCA 355
|| ||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 251 GGCGAAAACTATGCCCAATCAGCTAAAGACAAGGCTAATGAAGGAGCAAGCAAAGCTGCA 310
Query 356 GATAAAGCCTACGAGACAAAAGAGCAAGCAAAGGATAAAGCCTACGAAACTAAAGAGAAA 415
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 311 GATAAAGCCCACGAGACAAAAGAGCAAGCAAAGGATAAAGCCTACGAAACTAAAGAGCAA 370
Query 416 GCAAAGGATACAGCCTACAATGCAAAAGAGAAGGCTAAGGATTATGCTGAACGGACTAAA 475
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 371 GCAAAGGATACAGCCTACAATGCAAAAGAGAAGGCCAAGGATTATGCTGAACGGACTAAA 430
Query 476 GATAAGGTGAACGAAGGGGCGTATAAGGCAGCGGATAAAGCGGAAGATACAAAAGAAAAA 535
|| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 431 GACAAGGTGAACCAAGGCGCGTCTAAGGCAGCGGATAAAGCGGAAGATACAAAAGAAAGA 490
Query 536 GCAAAGGATTACGCAGAGGATACAATGGACAATGCAAAAGAGAAAGCTCGACATGCAAAA 595
|| |||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct 491 GCTAAGGATTACGCAGAAGATACAATGGACAATGCAAAGGAGAAAGCTCGAGATGCGAAA 550
Query 596 GAGAAGGTGAAAGAGTATGGAGAAGATACTAAGGAGAAGGCAGAAGGGTTTAAGGAGACT 655
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 551 GAGAAGGTCAAAGAGTATGGAGAAGATACTAAGGAGAGGGCAGAAGGGTTTAAGGAGACT 610
Query 656 GTGAAAGGTAAAGCTGAGGAACTTGGAGAGAAGACCAAGGAGACGGTGAAAGGAGCTTGG 715
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTGAAGGGTAAAGCTGAGGAACTTGGAGAGAAGACCAAGGAGACGGTGAAAGGAGCTTGG 670
Query 716 GAGAGTACTAAAAACGCTGCCCAAACCGTCACTGAAGCTGTGGTAGGGCCTGAAGAGGAT 775
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 671 GAGAGTACGAAAAACGCTGCCCAAACCGTCACTGAAGCTGTTGTTGGGCCTGAAGAGGAT 730
Query 776 GCGGAGAAGGCACGAGCTGATAT-GAATAAAGGCGTGGAAGATCACAGGAAGAA-AAAA- 832
||| |||||||||| |||||||| || |||||||||||||||||| | |||||| ||||
Sbjct 731 GCGAAGAAGGCACGGGCTGATATCGA-TAAAGGCGTGGAAGATCATACGAAGAAGAAAAA 789
Query 833 G-CAGAGAAAGATCAAAAAGAGGACGATTTCATAACATTTAACTGATGAGGAAAGATA-- 889
| | |||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 790 GGCGGAGAGAGATCAAAAAGAGGACGATTTCATAACATTTAACTGATGAGGAAATAAAGT 849
Query 890 --CATATGCGTTCTGAAGTGTTATTGCTTTTTATGTATTGCTCTGTTT-C-CT--GTTTA 943
| ||||||||||||| |||||| |||| ||||| |||||||||| | || ||||
Sbjct 850 TGCCTATGCGTTCTGAAATGTTATAACTTT--ATGTAATGCTCTGTTTTCTCTCAGTTTC 907
Query 944 TTCTCTGTTTTAAAACTACGTTTGATCACATGTATGTGACAGTGTGAGATGCATTAGTAT 1003
|||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||
Sbjct 908 TTCTCTGTTTTAAAACTACGCTTGATCTCATGTATGTGACAATGTGAGATGCATTAGTAT 967
Query 1004 ATAAATA 1010
|||||||
Sbjct 968 ATAAATA 974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5