BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21050.1
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946091 jgi|Araly1|946091|scaffold_702320.1 708 0.0
> Ahg946091 jgi|Araly1|946091|scaffold_702320.1
Length=712
Score = 708 bits (383), Expect = 0.0
Identities = 530/601 (88%), Gaps = 10/601 (2%)
Strand=Plus/Plus
Query 1 ATGGATAACTTGAATGTTTTCGCTAATGAAGACAATCAAGTGAATGGTTTGAAG---CGT 57
|||||||||||||||||||| || || ||||||||||||||| ||||| ||||| |
Sbjct 21 ATGGATAACTTGAATGTTTTTGCAAACGAAGACAATCAAGTGGATGGTGTGAAGCCACCC 80
Query 58 CCACCCCCGTCACGAGTGTGTCCAAGGTGTGATTCTGATAACACTAAGTTTTGCTTTTAC 117
|||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 81 CCACCCCCACCGCGAGTGTGTCCAAGGTGTGATTCTGATAACACTAAGTTTTGCTATTAC 140
Query 118 AACAACTACAGTGAATCTCAACCGCGCTACTTTTGCAAAAACTGTCGTAGATATTGGACT 177
|||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 141 AACAACTACAGTGAGTCTCAACCGCGCTACTTCTGCAAGAATTGTCGTAGATATTGGACT 200
Query 178 CATGGTGGAGCTTTAAGAAACATACCAGTTGGTGGAAGTTGTCGTAAACCAAAGCGTCTG 237
|||||||| |||||||| ||||||||| | |||||||||||||||||||| ||||||| |
Sbjct 201 CATGGTGGGGCTTTAAGGAACATACCAATCGGTGGAAGTTGTCGTAAACCTAAGCGTCCG 260
Query 238 AAGGTAGATCAATCTTCGATTTCTGAGATGGTTTCTGTTGAGAACC-AACCAATTAATCA 296
|||||||||||||||| | ||||| | |||||||| ||||||||| || | || ||||
Sbjct 261 AAGGTAGATCAATCTTTGGTTTCTCAAATGGTTTCCGTTGAGAACAGAAG-AGTTGATCA 319
Query 297 TCAATCTTTCAGACAAACTCAAGAAAACAATGAGTTTGTTCGATCTTTTGACGCTTCTTC 356
|||| |||||| ||| | | | |||||||| ||||||||||||||||||| ||||| ||
Sbjct 320 TCAACCTTTCAAACAGATTTATGAAAACAACGAGTTTGTTCGATCTTTTGGTGCTTCATC 379
Query 357 TTCTGCTACTGTTACTGCCGTTCCG-AACCATTTTGGTTATCTAAGTGAACTTCATGGTG 415
|||| ||| || | ||| ||| | |||||||| |||||||| ||||||||||||||||
Sbjct 380 TTCTTCTATTGCTGCTGTTGTTG-GTAACCATTTCGGTTATCTGAGTGAACTTCATGGTG 438
Query 416 TAACAAATTTGCTTCCAATTCAAAGTTTTCGAACAATGGACTGCTTAGATTTCGGTGATG 475
| ||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||
Sbjct 439 TGACAAATTTGCTTCCAGTTCGAAGTTTTCGAA---TGGATTGCTTAGATTTCGGTGATG 495
Query 476 AATCTTTTCAACAAGGTTATTACGATGTTGGATCCAATGATTTGATTGATAACCCTTTGA 535
| ||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 496 ATTCTTTTCAACAAGATTATCACGATGTTGGATCCAATGATTTGATTGGTAACCCTTTGA 555
Query 536 TAAACCAATCCATCGGTGGGTATGTTGATAATCTTACAAGTTATTGCATAAATCAAGTGG 595
||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||
Sbjct 556 TAAACCAATCCATTGGTGGATATGTTGATAATCTTAAAAGTTATCGCATAAATCAAGTGG 615
Query 596 A 596
|
Sbjct 616 A 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23178733536
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5