BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21080.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492780 jgi|Araly1|492780|fgenesh2_kg.7__2213__AT4G21080.1 710 0.0
Ahg946092 jgi|Araly1|946092|scaffold_702321.1 200 1e-50
> Ahg492780 jgi|Araly1|492780|fgenesh2_kg.7__2213__AT4G21080.1
Length=545
Score = 710 bits (384), Expect = 0.0
Identities = 497/551 (90%), Gaps = 9/551 (2%)
Strand=Plus/Plus
Query 1 ATGGATAACTTGAATGTTTTCGCAAATGAAGACAATCAAGTGAATGATGTGAAGCCCCCA 60
|||||| ||||||||||||| || |||||||||||||||||||||| ||||||| ||||
Sbjct 1 ATGGATGACTTGAATGTTTTTGCGAATGAAGACAATCAAGTGAATGGTGTGAAG--CCCA 58
Query 61 CCACCACCACCTCGAGTGTGTGCAAGGTGTGATTCTGATAATACTAAATTTTGTTATTAC 120
|||| ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct 59 -CACCTCCACCGCGAGTATGTGCAAGGTGTGATTCTGATAACACCAAGTTTTGTTATTAC 117
Query 121 AACAACTACTGTGAGTTTCAGCCACGATACTTCTGCAAGAACTGTCGTAGATACTGGACT 180
||||||||| || | |||| || || |||||||||||||||||||||||||||||||||
Sbjct 118 AACAACTACAGTTTGCTTCAACCGCGCTACTTCTGCAAGAACTGTCGTAGATACTGGACT 177
Query 181 CATGGTGGGGCTTTAAGAAACATACCAATTGGTGGAAG-TAGTCGTGCCAAACGGGCAAG 239
||||||||| ||||||| ||| |||||||||||||||| | ||||||||| | ||||||
Sbjct 178 CATGGTGGGACTTTAAGGAACGTACCAATTGGTGGAAGCTC-TCGTGCCAAGCAGGCAAG 236
Query 240 GGTAAATCAACCTTCGGTTGCTCGGATGGTTTCTGTTGAGACCCAACGAGGTAACAATCA 299
||||||||||||||||||||||||||||||| ||||||||| ||||| || |||| ||||
Sbjct 237 GGTAAATCAACCTTCGGTTGCTCGGATGGTTCCTGTTGAGATCCAACCAGTTAACCATCA 296
Query 300 ACCTTTCTCT-AATGTTCAAGAAAACGTTCATCTTGTTGGATCTTTTGGTGCTTCATCTT 358
|||||||| | ||||| ||||||||| || || |||||||| ||||||||||||||||||
Sbjct 297 ACCTTTCT-TGAATGTCCAAGAAAACATTAATTTTGTTGGACCTTTTGGTGCTTCATCTT 355
Query 359 CATCTTCTGTTGGTGCTGTTGGGAACCTTTTTGGTTCTTTGTATGATATTCATGGTGGTA 418
||||||||| || |||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 356 CATCTTCTGATGCTGCTGTTGGGAACCATTTCGGTTCTTTGTCTGATATTCATGGTGGTA 415
Query 419 TGGTAACAAATTTGCATCCAACTCGAACTGTTC-GACCAAATCATCGCTTAGCTTTCCAT 477
||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| |
Sbjct 416 TGGTAACAAATGTGCATCCAACTCGAACT-TTCCGACCAAATCATCGCTTAGCTTTCCCT 474
Query 478 GATGGATCATTTGAGCAAGACTATTACGATGTTGGGTCCGATAATCTTTTGGTCAACCAA 537
|||||||||||||||||||| |||||||| || || |||||||||||| |||||||||||
Sbjct 475 GATGGATCATTTGAGCAAGATTATTACGACGTCGGATCCGATAATCTTATGGTCAACCAA 534
Query 538 CAAGTTGGTGG 548
|||||||||||
Sbjct 535 CAAGTTGGTGG 545
> Ahg946092 jgi|Araly1|946092|scaffold_702321.1
Length=626
Score = 200 bits (108), Expect = 1e-50
Identities = 247/311 (79%), Gaps = 22/311 (7%)
Strand=Plus/Plus
Query 1 ATGGATAACTTGAATGTTTTCGCAAATGAAGACAATCAAGTGAATGATGTGAAGCCCCCA 60
||||||| |||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 22 ATGGATACCTTGAATGTTTTTGCAAATGAAGACAATCAAGTGAATGTTGTGAAG----C- 76
Query 61 CCACCACCACCTCGAGTGTGTGCAAGGTGTGATTCTGAT-AATACTAAATTTTGTTA-TT 118
|| |||||| ||||| ||| |||||||| |||| ||| || || ||||| || || ||
Sbjct 77 CC-CCACCA---CGAGTATGTCCAAGGTGTTATTCCGATCAA-ACAAAATTCTGCTACTT 131
Query 119 ACAACAACTACTGTGA-GTTTCAGCCACGATACTTCTGCAAGAACTGTCGTAGATACTGG 177
|||||||||| | || ||| ||||| ||| |||||| |||||||||||||||||
Sbjct 132 -CAACAACTAC-AAAACGTCTCAACCACGCTACAAATGCAAGGACTGTCGTAGATACTGG 189
Query 178 ACTCATGGTGGGGCTTTAAGAAACATACCAATTGGTGGAAGTAGTCGTG---CCAAACGG 234
||||||||||| |||||||| ||||||||||| ||||||||| | ||| |||| |
Sbjct 190 ACTCATGGTGGAGCTTTAAGGAACATACCAATCGGTGGAAGTTGCCGTAAATCCAAGCTT 249
Query 235 GCAAGGGTAAATCAACCTTCGGTTGCTCGGATGGTTTCTGTTGAGACCCAAC-GAGGTAA 293
||| | | ||||| |||| ||| ||| |||| ||||||||||| |||| ||| |||
Sbjct 250 CCAAAGATTGATCAATCTTCAGTTTCTCAAATGGCTTCTGTTGAGATTCAACCGAG-TAA 308
Query 294 -CAATCAACCT 303
|| |||||||
Sbjct 309 TCA-TCAACCT 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5