BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21090.2
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492779 jgi|Araly1|492779|fgenesh2_kg.7__2212__AT4G21090.1 1190 0.0
> Ahg492779 jgi|Araly1|492779|fgenesh2_kg.7__2212__AT4G21090.1
Length=916
Score = 1190 bits (644), Expect = 0.0
Identities = 754/807 (93%), Gaps = 8/807 (1%)
Strand=Plus/Plus
Query 153 GTTTAAAGCTTATACCTTTGGACGGCGCCAAAAACATGGTCTTCCATAGGCTATCAAGAT 212
||||||||||||||||||||| |||||||| || |||| ||||||||||||||| |||||
Sbjct 113 GTTTAAAGCTTATACCTTTGGGCGGCGCCAGAATCATGATCTTCCATAGGCTATTAAGAT 172
Query 213 TAGGTTCTCGCATTGTTAAAGAGCTCCCAAGAGAGAGACA-TT-TGTCAATGTGTGGAAA 270
||||||||||||||||||||||||||||||||| | | | || || || ||| |||||
Sbjct 173 TAGGTTCTCGCATTGTTAAAGAGCTCCCAAGAG-G-TATATTTATGCCAGTGTTTGGAAT 230
Query 271 GAGGATTCTTCAAAGGTCTTATGGCCAGTATCTTCAATCTTCGCCAATGCTGCAAAGGCA 330
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 231 GAGGATTCTACACAGGTCTTATGGCCAGTATCTTCAATCTTCGCCAATGCTACAAAGGCA 290
Query 331 AACTAGGAGTTTTAAGGAAGCATTATTCTCGAATAATCATAAGTTTTGTACATCTTTCAG 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AACTAGGAGTTTTAAGGAAGCATTATTCTCGAATAATCATAAGTTTTGTACATCTTTCAG 350
Query 391 CACTACCTCTGAGAAAGGTGGCGAAAAAACAGAAAAGATAAACGTTACCTTTGTTGATAA 450
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 351 CACTACCTCTGAGAAAGGTGGCGAAGAAACAGAAAAGATAAACGTTATCTTTGTTGATAA 410
Query 451 AGATGGAGAGGAAATTCATATCAAGGTTCCAGTAGGAATGAACATCCTTGAAGCTGCTCA 510
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 411 AGATGGAGAGGAAATTCATATTAAGGTTCCAATAGGAATGAACATCCTTGAAGCTGCTCA 470
Query 511 TGAAAATGATATAGAACTCGAAGGGGCATGTGAAGGTTCTCTAGCGTGTTCAACCTGCCA 570
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 471 TGAAAATGATATAGAACTCGAAGGGGCGTGTGAAGGCTCTCTAGCGTGTTCAACGTGCCA 530
Query 571 TGTGATTGTTATGGACACCAAATACTACAACAAACTCGAAGAACCAACAGATGAAGAGAA 630
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 531 TGTGATTGTTATGGACACTGAATACTACAACAAACTCGAAGAACCAACTGATGAAGAGAA 590
Query 631 TGATATGCTAGATCTCGCTTTCGGGTTAACAGCAACGTCGCGATTGGGATGTCAAGTCAT 690
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 591 TGATATGCTAGATCTTGCTTTCGGGTTAACAGCAACGTCACGATTGGGATGTCAAGTGAT 650
Query 691 CGCAAAACCAGAGCTAGATGGAGTACGCCTAGCCATTCCTTCAGCTACTAGAAATTTTGC 750
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 651 CGCAAAACCAGAGCTAGATGGAGTACGCTTAGCCATTCCCTCAGCTACTAGAAATTTTGC 710
Query 751 GGTTGATGGGTTTGTTCCAAAACCTCACTAGTCACTTAATAGTCTCAGAGCAAATGATTT 810
||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||
Sbjct 711 GGTTGATGGGTTTGTTCCAAAACCTCACTAGCCACTTAAAAGTCTCAGAGCAGAGGATTT 770
Query 811 TTCGaaaa-aaaaCCCATTACATAAAAATTACCCTTACGGAGAGTCATACAAATGTAATT 869
||||| | ||||| | | |||||||| ||||||||| ||||||| ||||||||||||||
Sbjct 771 TTCGAGGACAAAACTCGTGACATAAAA-TTACCCTTAGGGAGAGTTATACAAATGTAATT 829
Query 870 CAGACGGTGAGATTTCAACTCAGCttttttttGCAGCATTGTTTTATTGTGT--CTTGAG 927
||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||
Sbjct 830 CAGACGGTGAGATTTCAGCTCAGCTTGTTTTTGCAGCATTGTTTTATTGTGTGTCTTGAG 889
Query 928 TTTAATATATATTTCATGAAAAAGCTA 954
|||||| || ||||||||| |||||||
Sbjct 890 TTTAATTTAGATTTCATGACAAAGCTA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36598000320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5