BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G21105.1

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329492 jgi|Araly1|329492|fgenesh1_pm.C_scaffold_7001719           350    8e-96


> Ahg329492 jgi|Araly1|329492|fgenesh1_pm.C_scaffold_7001719
Length=207

 Score =  350 bits (189),  Expect = 8e-96
 Identities = 201/207 (97%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  97   ATGTTGACTGAAACTCCATTTAGGCCACGAGAGAAGCTTCTGGAGAAACAGAGATTGTTC  156
            ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGTGACTGAAACTCCATTTAGGCCACGAGAGAAGCTTCTGGAGAAGCAGAGATTGTTC  60

Query  157  CAGAGCATCCAAAGGCACACTTACTTGAAAGGACCAATGGACAAGATCACTTCTGTTGCT  216
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  61   CAGAGCATCCAGAGGCACACTTACTTGAAAGGACCAATGGACAAGATCACTTCCGTTGCT  120

Query  217  ATTCCTATTGCCTTGGCTGCAAGTTCTCTCTACATGATTGGAACAGGAATCTACAACATG  276
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ATTCCCATTGCCTTGGCTGCAAGTTCTCTCTACATGATTGGAACAGGAATCTACAACATG  180

Query  277  TCGAATGGAATCGGCAAAAAGGAATAA  303
            || ||||||||||||||||||||||||
Sbjct  181  TCTAATGGAATCGGCAAAAAGGAATAA  207



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20069839814


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5