BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21120.1
Length=2256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329490 jgi|Araly1|329490|fgenesh1_pm.C_scaffold_7001717 2881 0.0
> Ahg329490 jgi|Araly1|329490|fgenesh1_pm.C_scaffold_7001717
Length=1800
Score = 2881 bits (1560), Expect = 0.0
Identities = 1712/1787 (96%), Gaps = 4/1787 (0%)
Strand=Plus/Plus
Query 283 GGTGGTGGTGACGATGGGCTTCGTCGGCGAGGCTGTTCATGCACAAAAGACGATTTCTTA 342
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GGTGGTGGGGACGACGGGCTTCGTCGGCGAGGCTGTTCATGCACAAAAGACGATTTCTTA 75
Query 343 CCGGAAGAATCGTTCCAAAGCATGGGGAATTACCTAAAAGCCCTTAAAGAAACACCGAGT 402
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 76 CCGGAGGAATCGTTCCAAAGCATGGGAAATTACCTAAAAGCCCTTAAAGAAACACCGAGT 135
Query 403 CGGTTCATGGATCGTATTATGACTCGGTCACTAGACTCCGACGAGATTAACGAGATGAAG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 CGGTTCATGGATCGTATTATGACTCGGTCACTAGACTCCGACGAGATTAACGAGATGAAG 195
Query 463 GCTCGTAGTGGTCACGAGATGAAGAAGACGTTGACGTGGTGGGATCTCATGTGGTTTGGT 522
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 196 GCTCGTAGTGGTCACGAGATGAAGAAAACGTTGACGTGGTGGGATCTGATGTGGTTTGGT 255
Query 523 ATCGGTGCAGTCATCGGCTCTGGGATATTCGTTCTCACTGGACTCGAAGCACGTAAT-CA 581
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct 256 ATCGGTGCAGTCATCGGCTCCGGGATATTCGTTCTCACCGGACTCGAAGCACGTAATGC- 314
Query 582 TTCCGGTCCAGCCGTCGTGTTGTCTTACGTTGTCTCTGGTGTCTCCGCCATGCTCTCCGT 641
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TTCCGGTCCCGCCGTCGTGTTGTCTTACGTTGTCTCTGGTGTCTCCGCCATGCTCTCCGT 374
Query 642 CTTTTGTTACACCGAGTTCGCCGTTGAGATTCCCGTCGCAGGCGGTTCTTTTGCCTACTT 701
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 375 CTTTTGTTACACCGAGTTCGCCGTTGAGATTCCCGTCGCTGGTGGTTCTTTTGCCTACTT 434
Query 702 AAGAGTGGAGCTCGGCGACTTCATGGCCTTCATCGCCGCGGGAAACATAATCCTCGAATA 761
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 AAGAGTGGAGCTCGGCGACTTCATGGCCTTCATCGCCGCCGGAAACATAATCCTCGAATA 494
Query 762 CGTTGTCGGTGGAGCTGCCGTGGCTCGATCGTGGACCTCTTACTTCGCCACTCTCTTAAA 821
||| || || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 495 CGTCGTTGGCGGAGCTGCCGTGGCTCGATCATGGACCTCTTACTTCGCCACTCTCTTAAA 554
Query 822 CCATAAACCTGAAGACTTCCGCATCATAGTTCACAAACTCGGCGAAGACTATAGCCACTT 881
||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 555 CCACAAACCTGAAGACTTCCGCATCATAGCTCACAGTCTCGGCGAAGACTATAGCCACTT 614
Query 882 AGATCCAATAGCCGTCGGCGTTTGCGCCATCATTTGTGTTTTAGCTGTCGTTGGCACAAA 941
||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 615 AGATCCAATCGCTGTCGGCGTTTGCGCCATCATTTGTGTTTTAGCTGTCCTTGGCACGAA 674
Query 942 AGGCTCCTCAAGATTCAATTACATTGCTTCTATAATCCACATGGTCGTGATTCTCTTTGT 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 AGGCTCCTCAAGATTCAATTACATTGCTTCTATAATCCACATGGTCGTGATTCTCTTTGT 734
Query 1002 TATCATCGCCGGATTTACTAAAGCCGATGTGAAAAACTACAGCGATTTCACTCCTTACGG 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 735 CATCATCGCCGGATTTACTAAAGCCGATGTGAAAAACTACAGCGATTTCACTCCTTATGG 794
Query 1062 CGTTAGAGGAGTGTTTAAATCCGCCGCGGTTCTTTTCTTTGCCTATATTGGATTTGATGC 1121
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 795 AGTTAGAGGAGTGTTTAAATCCGCTGCGGTTCTTTTCTTTGCCTATATTGGATTTGATGC 854
Query 1122 GGTTTCAACGATGGCTGAGGAGACAAAGAATCCAGGGAGAGATATTCCTATTGGTCTTGT 1181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 855 GGTTTCAACGATGGCTGAGGAGACAAAGAATCCAGGGAGAGATATTCCGATTGGTCTTGT 914
Query 1182 TGGATCGATGGTGGTTACTACGGTTTGTTATTGTCTCATGGCGGTTACGTTGTGTCTTAT 1241
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 915 TGGATCGATGGTGGTTACTACAGTTTGTTATTGTCTCATGGCGGTTGTGTTGTGTCTTAT 974
Query 1242 GCAGCCGTATCAACAGATTGATCCGGACGCGCCATTCTCGGTTGCGTTTTCTGCCGTTGG 1301
||| |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 975 GCAACCGTTTCAACAGATTGATCCGGACGCGCCATTCTCAGTTGCGTTTTCTGCGGTTGG 1034
Query 1302 ATGGGATTGGGCTAAGTACATTGTCGCCTTTGGGGCTCTTAAAGGTATGACGACGGTTTT 1361
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1035 ATGGGATTGGGCTAAGTACATTGTCGCGTTTGGTGCTCTTAAAGGTATGACGACAGTTTT 1094
Query 1362 GTTAGTTGGGGCCATTGGTCAAGCTAGGTACATGACACACATAGCCCGAGCCCATATGAT 1421
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1095 GTTAGTTGGAGCCATTGGTCAAGCTAGGTACATGACACACATAGCCAGGGCCCATATGAT 1154
Query 1422 GCCTCCATGGCTAGCTCAAGTCAACGCAAAGACCGGAACACCAATTAACGCGACCGTGGT 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 GCCTCCATGGCTAGCTCAAGTCAACGCAAAGACCGGAACACCAATTAACGCGACCGTGGT 1214
Query 1482 AATGCTTGCCGCGACAGCTCTCATAGCATTCTTCACAAAACTGAAAATTTTAGCCGATCT 1541
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 AATGCTTGCCGCTACAGCTCTCATAGCATTCTTCACAAAACTGAAAATTTTAGCCGATCT 1274
Query 1542 CTTGTCTGTTTCCACACTTTTCATCTTCATGTTCGTTGCTGTGGCTCTTCTCGTTAGAAG 1601
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1275 CTTGTCTGTTTCCACACTTTTCATCTTCATGTTCGTTGCTGTGGCTCTTCTCGTCAGAAG 1334
Query 1602 ATATTACGTCACCGGAGAAACATCGACCCGTGACCGTAACAAGTTTTTAGTGTTCTTAGG 1661
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1335 ATATTACGTCACGGGAGAAACATCGTCCCGTGACCGTAACAAGTTTTTAGTGTTCTTAGG 1394
Query 1662 TTTGATTCTTGCGTCCTCTACCGCGACTGCTGTTTATTGGGCTTTGGAAGAAGAAGGTTG 1721
|||||||||||||||||| ||||| |||| ||||||||||||||||||| |||| |||||
Sbjct 1395 TTTGATTCTTGCGTCCTCGACCGCCACTGGTGTTTATTGGGCTTTGGAAAAAGAGGGTTG 1454
Query 1722 GATTGGGTATTGCATTACGGTTCCTATATGGTTTCTGTCTACGGTTGCCATGAAGTTTCT 1781
|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1455 GATTGGGTATTGCATTACGGTTCCTATATGGTTTCTGTCTACAGCTGGGATGAAGTTTCT 1514
Query 1782 TGTACCGCAAGCTAGGGCTCCGAAAATTTGGGGTGTTCCTTTGGTTCCGTGGTTGCCTTC 1841
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1515 TGTACCGCAAGCTAGGGCTCCCAAAATTTGGGGTGTTCCTTTGGTTCCGTGGTTGCCTTC 1574
Query 1842 TGCTTCCATCGCTATTAATATCTTCCTTCTTGGTTCCATCGATACAAAATCGTTCGTTAG 1901
|||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 1575 TGCTTCGATCGCTATTAATATCTTTCTACTTGGTTCCATCGATAAAAAATCGTTCGTTAG 1634
Query 1902 GTTTGCAATCTGGACAGGTATTCTGCTCATATATTACGTCTTGTTTGGGTTGCACGCAAC 1961
|||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 1635 GTTTGCAATCTGGACAGGTATTCTTCTCGTATATTACGTCTTGTTTGGATTGCACGCAAC 1694
Query 1962 GTATGATACAGCTAAGGCGACGTTGAAGGAGAAGCAGGCATTGCAGAAAGCTGAGGAAGG 2021
|| ||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 1695 TTACGATACAGCTAAGGCGACGTTGAAGGAGAAGCTGACGTTGCAGAAAGCTGAGGAAGG 1754
Query 2022 TGGTGTTGTTGCTGATAATTCTTGTTCTGCAACT-TAAGCTCACTAG 2067
||||||||||||||| |||||| ||||||||||| || | |||||||
Sbjct 1755 TGGTGTTGTTGCTGACAATTCTGGTTCTGCAACTGTA-GATCACTAG 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84941246350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5