BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21130.1 Length=1465 Score E Sequences producing significant alignments: (Bits) Value Ahg492774 jgi|Araly1|492774|fgenesh2_kg.7__2207__AT4G21130.1 1096 0.0 Ahg490186 jgi|Araly1|490186|fgenesh2_kg.6__3320__AT4G05410.1 457 1e-127 > Ahg492774 jgi|Araly1|492774|fgenesh2_kg.7__2207__AT4G21130.1 Length=1432 Score = 1096 bits (593), Expect = 0.0 Identities = 746/818 (91%), Gaps = 17/818 (2%) Strand=Plus/Plus Query 1 AGGgagagaagaatgaaa--c----tcgagaagaagaaaggtatt-ggggcgaagagaag 53 |||||||||||||||||| | ||||||||||||||| || ||||||||||||| Sbjct 1 AGGGAGAGAAGAATGAAATTCAAGAACGAGAAGAAGAAAGG-CTTCGGGGCGAAGAGAAT 59 Query 54 agggaaaaagagTTCCATCGATC-ATGATCCTTTCTTAGAGGAAGAGACAG-AGAAGCGG 111 |||||||||||||||||||||| | ||||||||||| ||||||||||| | |||||||| Sbjct 60 CGGGAAAAAGAGTTCCATCGATCGA-GATCCTTTCTTCGAGGAAGAGAC-GAAGAAGCGG 117 Query 112 AGAAAATTCAATTACGATGATGATGATGATATCGAATCTGTAGAATCTGAAGAGGAAGGG 171 |||||||||||||| | |||||||||||||||| ||||| ||||||||||||||||| Sbjct 118 GGAAAATTCAATTAC-A--ATGATGATGATATCGAGTCTGTCGAATCTGAAGAGGAAGGA 174 Query 172 AAGGTTGGTGAGGAGGTGGAGGATGAGTTTG-CTCATGAGACGGTAGGCGAGAAACGAAA 230 ||||||||||||||| | |||||| |||||| || ||||||||||||| ||||||||||| Sbjct 175 AAGGTTGGTGAGGAGATAGAGGATAAGTTTGCCT-ATGAGACGGTAGGTGAGAAACGAAA 233 Query 231 GAGACTGGCGGAGGATACTTTGAATAGAATCGAAGAGGCGAAACAGAGAGAGCATGAAGA 290 |||| | ||| || |||| | ||||||||||||||||||| | || ||||| |||||| Sbjct 234 GAGATTTTTGGAAGAGACTTCGGATAGAATCGAAGAGGCGAAGCGGAAAGAGCGTGAAGA 293 Query 291 AGATAACGAGGAAGATGATGATTTTAGAGATTCGCTTGTGGCAAAGACTCTAATGCAGGA 350 |||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||| Sbjct 294 AGATGACGAGGAAGATGATGGTGTTAGAGATTCGCTTGTGGTGAAGACTCTAATGCAGGA 353 Query 351 ACAGCTCGAGAAGAGTGGTCGTGTTCGGAGAGCCAATGCATTGAGGGTTCAAGATCTACA 410 |||||||||||||||||||||||||||||||||| ||||| |||||||||||| | || Sbjct 354 GCAGCTCGAGAAGAGTGGTCGTGTTCGGAGAGCCATTGCATCGAGGGTTCAAGAACCACG 413 Query 411 GAGTAGCGATAAGTTTCGTGTTATAGTCAAACACCAACATTCTGTTACAGGAGTAGCTCT 470 |||||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||| Sbjct 414 GAGTAGCGATGAGTTTCGTATTATAGTCAAACACCAACAATCTGTTACAGCAGTAGCTCT 473 Query 471 ATCAGATGATGATTCAAGAGGGTTCTCAGTTTCGAAAGACGGTACTATTCTGCATTGGGA 530 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 474 ATCAGATGATGATTCAAGAGGGTTCTCAGTTTCGAAGGACGGTACTATTCTGCATTGGGA 533 Query 531 TGTATCTTCTGGTAAAAGTGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCA 590 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TGTATCGTCTGGTAAAAGCGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCA 593 Query 591 CGGGTTAAAGTTCCAGGAATCTTGGTATACAAGACATAACAAACAATCTCTAGCATTAGC 650 ||| |||| ||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 594 CGGATTAATCTTCCAGGAATCTTGGAATACAAGACATAACAAACAATCTCTAGCGCTAGC 653 Query 651 TGTTAGCTCTGATGGCCGGTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCATTTGTG 710 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 654 AGTTAGCTCTGATGGCCGTTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCATTTGTG 713 Query 711 GGATATCCGAACACGAGAGCATGTCCAGGCTTTTACAGGTCACTGTGGCATTGTTTCTAG 770 |||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 714 GGATATTCGTACACGAGAGCATGTCCAGGCCTTTACAGGTCACCGTGGCATTGTTTCTAG 773 Query 771 TCTATGCTTTAGAGAAGGAACTGCAGAACTCTTTTCTG 808 |||||||||||||||||||||||||||||||||||||| Sbjct 774 TCTATGCTTTAGAGAAGGAACTGCAGAACTCTTTTCTG 811 Score = 961 bits (520), Expect = 0.0 Identities = 588/622 (95%), Gaps = 0/622 (0%) Strand=Plus/Plus Query 844 GAACATAGAACATATATAGAATCATGTTTTGGACACCAGTCTGAACTTCTATCCATTGAT 903 ||| |||||| ||||||||| ||| |||||||||||||||||||| ||||| ||||||| Sbjct 811 GAAGATAGAATATATATAGACTCAAGTTTTGGACACCAGTCTGAAATTCTAAGCATTGAT 870 Query 904 GCTCTAGGGAGGGAGCGTGTTCTCAGTGTTGGACGCGATAGAACAATGCAGTTATATAAG 963 |||||| | |||||||| ||||||||||||||||||||||||||| |||||||||| ||| Sbjct 871 GCTCTAAGAAGGGAGCGCGTTCTCAGTGTTGGACGCGATAGAACATTGCAGTTATACAAG 930 Query 964 GTTCCCGAGTCTACTCGGTTGATCTATCGAGCTTCCGAATCAAATTTTGAGTGCTGCTGT 1023 |||||||||||||||| ||||||| ||||||||| ||||||||| |||||||||||||| Sbjct 931 GTTCCCGAGTCTACTCATTTGATCTTTCGAGCTTCTGAATCAAATCTTGAGTGCTGCTGT 990 Query 1024 TTTGTTAATAGTGATGAGTTTTTGTCCGGATCAGATAATGGAAGTATTGCACTTTGGTCC 1083 ||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||||| Sbjct 991 TTTGTTAGTAGTGATGAGTTTTTGGCCGGATCAGATAATGGAAGCATTTCACTTTGGTCC 1050 Query 1084 ATTTTGAAAAAGAAACCAGTGTTTATCGTTAACAATGCTCACCACGTGATAGCTGATCAT 1143 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1051 ATTTTGAATAAGAAACCAGTGTTTATCGTTAAGAATGCTCACCACGTGATAGCTGATCAT 1110 Query 1144 GATTCTGTTAACCATAACTGTACACCAGCATGTTCTTGGGTCAGTTCAGTTGCTGTCTGT 1203 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1111 GATTCTGTTAACCATAACTGTACATCAGCATGTTCTTGGGTCAGTTCAGTTGCTGTCTGT 1170 Query 1204 AGAGGTAGCGAGCTTGCTGCATCGGGAGCTGGTAATGGTTGTGTGCGTTTATGGGGTGTT 1263 ||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1171 AGAGGTAGCGATCTCGCTGCATCGGGAGCTGGTGATGGTTGTGTGCGTTTATGGGGTGTT 1230 Query 1264 GAAAGTGGATCTAGTGCTATACAACCTTTATACGAGCTTCCACTTCCTGGGTTTGTGAAC 1323 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1231 GAAAGTGGATCTAGAGCTATACAACCTTTATATGAGCTTCCACTTCCTGGGTTTGTGAAC 1290 Query 1324 TCTTTAGCTTTTGCAAAATCTGGTCGGTTTCTGATCGCTGGTGTTGGACAGGAACCGCGG 1383 ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| Sbjct 1291 TCTTTAGCTTTTGCAAAATCTGGCCAGTTTCTGATAGCTGGTGTTGGACAGGAACCGCGA 1350 Query 1384 CTCGGAAGATGGGGTTGCTTAAAATCTGCGCAGAACGGTGTTGCAATACATCCCTTAAGG 1443 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1351 CTCGGAAGATGGGGTTGCTTAAAATCTGCGCAGAACGGTGTTACAATACATCCCTTAAGG 1410 Query 1444 CTTTCATGAAGGGATCTCAATT 1465 |||||||||||||||||||||| Sbjct 1411 CTTTCATGAAGGGATCTCAATT 1432 > Ahg490186 jgi|Araly1|490186|fgenesh2_kg.6__3320__AT4G05410.1 Length=1914 Score = 457 bits (247), Expect = 1e-127 Identities = 737/967 (76%), Gaps = 59/967 (6%) Strand=Plus/Plus Query 189 GGAGGATGAGTTTGCTCATGAGACGGTAGGCGAGAA-ACGAAAGAGACTGGCGGAGGATA 247 |||||||||||||||| |||||||||| || ||||| | | |||||| || ||||||||| Sbjct 322 GGAGGATGAGTTTGCTGATGAGACGGTGGGAGAGAAGAAG-AAGAGATTGACGGAGGATA 380 Query 248 CT-TTGAATAGAATCGA-AGAGGCGAAACAGAGAGAGCATGAAG-AAGATAACGAGGAAG 304 | |||||||| | || || || || | |||||||| || || ||| || || | Sbjct 381 -TGCTGAATAGACT-GAGGGAAGCTAAGCGGAGAGAGCGTG-AGCAAGCGGGTGATGATG 437 Query 305 ATGATGATTTTAGA-GAT--TCGCTTGT-GGCA-AAGACTCTAATGCAGGAA-CAGCTCG 358 ||||||| | ||| ||| | | || | |||| | | ||||| ||| |||| | Sbjct 438 ATGATGA-TGAAGACGATGAT-GAGAGTATTAAGAAGATTTTGATGCA-GAAGCAGCAAG 494 Query 359 AGAAGAGTGGTCGTG-TTCGGAGAGCCAATGCATTGAGGGTTCAAGATCTAC-AGAGTAG 416 || |||||||| | | |||| |||| | ||||| |||||||| || | || | |||| Sbjct 495 AGGAGAGTGGTAG-GATTCGAAGAGTTATTGCATCCAGGGTTCAGGAGCCACTA-AGTA- 551 Query 417 C-GATAAGTTTCGTGTTATAGTCAAACACCAAC-ATTCTGTTACA-GGAGTAGCTCTATC 473 | ||| |||| ||||||| ||||| |||| || | |||||| | | |||||| |||| Sbjct 552 CTGATGGGTTTAGTGTTATTGTCAAGCACCGACGA-TCTGTTGTATCG-GTAGCTTTATC 609 Query 474 AGATGATGATTCAAGAGGGTTCTCAGTTTCGAAAGACGGTACTATTCTGCATTGGGATGT 533 ||||||||||| ||||| || |||| ||| ||||| |||||| || ||||||||||||| Sbjct 610 GGATGATGATTCTAGAGGATTTTCAGCTTCAAAAGATGGTACTGTTATGCATTGGGATGT 669 Query 534 ATCTTCTGGTAAAAGTGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCACGG 593 |||||||||||||||||| | |||| ||||||||| |||||| || |||||||||| || Sbjct 670 ATCTTCTGGTAAAAGTGACAAATACATATGGCCAAGTGATGAAATTCTGAAGTCTCATGG 729 Query 594 GTT-AAAGTTCCAGGAATCTTGGTATACAAGACATAACAAACAATCTCTAGCATTAGCTG 652 | | ||| | || | || | ||| || ||| | || | ||||||| || ||||||| Sbjct 730 GATGAAAATGAGAG-AGCCTCGAAATAAAAAACACAGCAGAGAATCTCTTGCTTTAGCTG 788 Query 653 TTAGCTCTGATGGCCGGTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCAT-TTGTGG 711 ||||||||||||| || ||||| || |||||||||||||| | ||||||||| || ||| Sbjct 789 TTAGCTCTGATGGTCGTTATTTGGCCACTGGAGGAGTTGACCGTCATGTTCATATT-TGG 847 Query 712 GATATCCGAACACGAGAGCATGTCCAGGCTTTTACAGGTCACTGTGG-CATTGTTTCTAG 770 ||| | || || ||||||||||||||||| ||| |||||||| | | || |||||| | Sbjct 848 GATGTTCGTACCCGAGAGCATGTCCAGGCCTTTCCAGGTCACAG-GAACACCGTTTCTTG 906 Query 771 TCTATGCTTT-AGAGAAGGAACTGCAGAACTCTTTTCTGGTTCATATGATGGAACAT-T- 827 |||||| ||| ||| | |||||| ||||| ||| ||||||||||| |||| ||| || | Sbjct 907 TCTATG-TTTCAGATACGGAACTTCAGAAGTCTATTCTGGTTCATTTGATAGAA-ATGTG 964 Query 828 AAGTATATGGAATGCAGAACATAGAA-CATATATAGAATCATG-TTTTGGACACCAGTCT 885 ||| | ||||||| |||| ||| || | | | || | | || ||||||||||||| | Sbjct 965 AAGG-TGTGGAATGTAGAAGATA-AAGCGTTTGTA-ACTGATAATTTTGGACACCAGGGT 1021 Query 886 GAACTTCTATCCATTGATGCT-CTAG-GGAGGGAGCGTGTTCTCA-GTGTTGGACGCGAT 942 ||| ||||| ||||||||| | || | ||| |||||||| || | | |||||| | ||| Sbjct 1022 GAAGTTCTAGCCATTGATG-TGCT-GCGGAAGGAGCGTGCACTTACG-GTTGGAAGAGAT 1078 Query 943 AGAACAATGCAGTTAT-ATAAGGTTCCCGAGTCTA-CTCGGT-TGATCTATCGAGCTTCC 999 ||||| |||| || || ||||||| || ||| ||| | || | || ||||||| ||| || Sbjct 1079 AGAACCATGCTGT-ATCATAAGGTGCCTGAGACTAGC-CG-TATGGTCTATCGTGCT-CC 1134 Query 1000 -GAATCAAATTTTGAGTGCTGCTGTTTTGTTAAT-AGTGATGAGTTTTTGTCCGGATCAG 1057 | |||| | ||||| |||||||||| | | | | | |||||| |||| || || | Sbjct 1135 TGCATCATCTCTTGAGAGCTGCTGTTTCATCAGTGA-TAATGAGTACCTGTCTGGTTCGG 1193 Query 1058 ATAATGGAAGTATTGCACTTTGGTCCATTTTGAAAAAGAAACCAGTGTTTATCGTTAACA 1117 ||||||||| | |||| |||||| ||| || ||||||||||| ||||| || || || Sbjct 1194 ATAATGGAACTGTTGCTCTTTGGGGCATGTTAAAAAAGAAACCGGTGTTCATTGTCAAGG 1253 Query 1118 ATGCTCA 1124 ||||||| Sbjct 1254 ATGCTCA 1260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54811862555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5