BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21130.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492774 jgi|Araly1|492774|fgenesh2_kg.7__2207__AT4G21130.1 1096 0.0
Ahg490186 jgi|Araly1|490186|fgenesh2_kg.6__3320__AT4G05410.1 457 1e-127
> Ahg492774 jgi|Araly1|492774|fgenesh2_kg.7__2207__AT4G21130.1
Length=1432
Score = 1096 bits (593), Expect = 0.0
Identities = 746/818 (91%), Gaps = 17/818 (2%)
Strand=Plus/Plus
Query 1 AGGgagagaagaatgaaa--c----tcgagaagaagaaaggtatt-ggggcgaagagaag 53
|||||||||||||||||| | ||||||||||||||| || |||||||||||||
Sbjct 1 AGGGAGAGAAGAATGAAATTCAAGAACGAGAAGAAGAAAGG-CTTCGGGGCGAAGAGAAT 59
Query 54 agggaaaaagagTTCCATCGATC-ATGATCCTTTCTTAGAGGAAGAGACAG-AGAAGCGG 111
|||||||||||||||||||||| | ||||||||||| ||||||||||| | ||||||||
Sbjct 60 CGGGAAAAAGAGTTCCATCGATCGA-GATCCTTTCTTCGAGGAAGAGAC-GAAGAAGCGG 117
Query 112 AGAAAATTCAATTACGATGATGATGATGATATCGAATCTGTAGAATCTGAAGAGGAAGGG 171
|||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||
Sbjct 118 GGAAAATTCAATTAC-A--ATGATGATGATATCGAGTCTGTCGAATCTGAAGAGGAAGGA 174
Query 172 AAGGTTGGTGAGGAGGTGGAGGATGAGTTTG-CTCATGAGACGGTAGGCGAGAAACGAAA 230
||||||||||||||| | |||||| |||||| || ||||||||||||| |||||||||||
Sbjct 175 AAGGTTGGTGAGGAGATAGAGGATAAGTTTGCCT-ATGAGACGGTAGGTGAGAAACGAAA 233
Query 231 GAGACTGGCGGAGGATACTTTGAATAGAATCGAAGAGGCGAAACAGAGAGAGCATGAAGA 290
|||| | ||| || |||| | ||||||||||||||||||| | || ||||| ||||||
Sbjct 234 GAGATTTTTGGAAGAGACTTCGGATAGAATCGAAGAGGCGAAGCGGAAAGAGCGTGAAGA 293
Query 291 AGATAACGAGGAAGATGATGATTTTAGAGATTCGCTTGTGGCAAAGACTCTAATGCAGGA 350
|||| ||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 294 AGATGACGAGGAAGATGATGGTGTTAGAGATTCGCTTGTGGTGAAGACTCTAATGCAGGA 353
Query 351 ACAGCTCGAGAAGAGTGGTCGTGTTCGGAGAGCCAATGCATTGAGGGTTCAAGATCTACA 410
|||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||
Sbjct 354 GCAGCTCGAGAAGAGTGGTCGTGTTCGGAGAGCCATTGCATCGAGGGTTCAAGAACCACG 413
Query 411 GAGTAGCGATAAGTTTCGTGTTATAGTCAAACACCAACATTCTGTTACAGGAGTAGCTCT 470
|||||||||| |||||||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct 414 GAGTAGCGATGAGTTTCGTATTATAGTCAAACACCAACAATCTGTTACAGCAGTAGCTCT 473
Query 471 ATCAGATGATGATTCAAGAGGGTTCTCAGTTTCGAAAGACGGTACTATTCTGCATTGGGA 530
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 474 ATCAGATGATGATTCAAGAGGGTTCTCAGTTTCGAAGGACGGTACTATTCTGCATTGGGA 533
Query 531 TGTATCTTCTGGTAAAAGTGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCA 590
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGTATCGTCTGGTAAAAGCGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCA 593
Query 591 CGGGTTAAAGTTCCAGGAATCTTGGTATACAAGACATAACAAACAATCTCTAGCATTAGC 650
||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 594 CGGATTAATCTTCCAGGAATCTTGGAATACAAGACATAACAAACAATCTCTAGCGCTAGC 653
Query 651 TGTTAGCTCTGATGGCCGGTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCATTTGTG 710
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGTTAGCTCTGATGGCCGTTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCATTTGTG 713
Query 711 GGATATCCGAACACGAGAGCATGTCCAGGCTTTTACAGGTCACTGTGGCATTGTTTCTAG 770
|||||| || |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 714 GGATATTCGTACACGAGAGCATGTCCAGGCCTTTACAGGTCACCGTGGCATTGTTTCTAG 773
Query 771 TCTATGCTTTAGAGAAGGAACTGCAGAACTCTTTTCTG 808
||||||||||||||||||||||||||||||||||||||
Sbjct 774 TCTATGCTTTAGAGAAGGAACTGCAGAACTCTTTTCTG 811
Score = 961 bits (520), Expect = 0.0
Identities = 588/622 (95%), Gaps = 0/622 (0%)
Strand=Plus/Plus
Query 844 GAACATAGAACATATATAGAATCATGTTTTGGACACCAGTCTGAACTTCTATCCATTGAT 903
||| |||||| ||||||||| ||| |||||||||||||||||||| ||||| |||||||
Sbjct 811 GAAGATAGAATATATATAGACTCAAGTTTTGGACACCAGTCTGAAATTCTAAGCATTGAT 870
Query 904 GCTCTAGGGAGGGAGCGTGTTCTCAGTGTTGGACGCGATAGAACAATGCAGTTATATAAG 963
|||||| | |||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 871 GCTCTAAGAAGGGAGCGCGTTCTCAGTGTTGGACGCGATAGAACATTGCAGTTATACAAG 930
Query 964 GTTCCCGAGTCTACTCGGTTGATCTATCGAGCTTCCGAATCAAATTTTGAGTGCTGCTGT 1023
|||||||||||||||| ||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 931 GTTCCCGAGTCTACTCATTTGATCTTTCGAGCTTCTGAATCAAATCTTGAGTGCTGCTGT 990
Query 1024 TTTGTTAATAGTGATGAGTTTTTGTCCGGATCAGATAATGGAAGTATTGCACTTTGGTCC 1083
||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 991 TTTGTTAGTAGTGATGAGTTTTTGGCCGGATCAGATAATGGAAGCATTTCACTTTGGTCC 1050
Query 1084 ATTTTGAAAAAGAAACCAGTGTTTATCGTTAACAATGCTCACCACGTGATAGCTGATCAT 1143
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1051 ATTTTGAATAAGAAACCAGTGTTTATCGTTAAGAATGCTCACCACGTGATAGCTGATCAT 1110
Query 1144 GATTCTGTTAACCATAACTGTACACCAGCATGTTCTTGGGTCAGTTCAGTTGCTGTCTGT 1203
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1111 GATTCTGTTAACCATAACTGTACATCAGCATGTTCTTGGGTCAGTTCAGTTGCTGTCTGT 1170
Query 1204 AGAGGTAGCGAGCTTGCTGCATCGGGAGCTGGTAATGGTTGTGTGCGTTTATGGGGTGTT 1263
||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1171 AGAGGTAGCGATCTCGCTGCATCGGGAGCTGGTGATGGTTGTGTGCGTTTATGGGGTGTT 1230
Query 1264 GAAAGTGGATCTAGTGCTATACAACCTTTATACGAGCTTCCACTTCCTGGGTTTGTGAAC 1323
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1231 GAAAGTGGATCTAGAGCTATACAACCTTTATATGAGCTTCCACTTCCTGGGTTTGTGAAC 1290
Query 1324 TCTTTAGCTTTTGCAAAATCTGGTCGGTTTCTGATCGCTGGTGTTGGACAGGAACCGCGG 1383
||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||
Sbjct 1291 TCTTTAGCTTTTGCAAAATCTGGCCAGTTTCTGATAGCTGGTGTTGGACAGGAACCGCGA 1350
Query 1384 CTCGGAAGATGGGGTTGCTTAAAATCTGCGCAGAACGGTGTTGCAATACATCCCTTAAGG 1443
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1351 CTCGGAAGATGGGGTTGCTTAAAATCTGCGCAGAACGGTGTTACAATACATCCCTTAAGG 1410
Query 1444 CTTTCATGAAGGGATCTCAATT 1465
||||||||||||||||||||||
Sbjct 1411 CTTTCATGAAGGGATCTCAATT 1432
> Ahg490186 jgi|Araly1|490186|fgenesh2_kg.6__3320__AT4G05410.1
Length=1914
Score = 457 bits (247), Expect = 1e-127
Identities = 737/967 (76%), Gaps = 59/967 (6%)
Strand=Plus/Plus
Query 189 GGAGGATGAGTTTGCTCATGAGACGGTAGGCGAGAA-ACGAAAGAGACTGGCGGAGGATA 247
|||||||||||||||| |||||||||| || ||||| | | |||||| || |||||||||
Sbjct 322 GGAGGATGAGTTTGCTGATGAGACGGTGGGAGAGAAGAAG-AAGAGATTGACGGAGGATA 380
Query 248 CT-TTGAATAGAATCGA-AGAGGCGAAACAGAGAGAGCATGAAG-AAGATAACGAGGAAG 304
| |||||||| | || || || || | |||||||| || || ||| || || |
Sbjct 381 -TGCTGAATAGACT-GAGGGAAGCTAAGCGGAGAGAGCGTG-AGCAAGCGGGTGATGATG 437
Query 305 ATGATGATTTTAGA-GAT--TCGCTTGT-GGCA-AAGACTCTAATGCAGGAA-CAGCTCG 358
||||||| | ||| ||| | | || | |||| | | ||||| ||| |||| |
Sbjct 438 ATGATGA-TGAAGACGATGAT-GAGAGTATTAAGAAGATTTTGATGCA-GAAGCAGCAAG 494
Query 359 AGAAGAGTGGTCGTG-TTCGGAGAGCCAATGCATTGAGGGTTCAAGATCTAC-AGAGTAG 416
|| |||||||| | | |||| |||| | ||||| |||||||| || | || | ||||
Sbjct 495 AGGAGAGTGGTAG-GATTCGAAGAGTTATTGCATCCAGGGTTCAGGAGCCACTA-AGTA- 551
Query 417 C-GATAAGTTTCGTGTTATAGTCAAACACCAAC-ATTCTGTTACA-GGAGTAGCTCTATC 473
| ||| |||| ||||||| ||||| |||| || | |||||| | | |||||| ||||
Sbjct 552 CTGATGGGTTTAGTGTTATTGTCAAGCACCGACGA-TCTGTTGTATCG-GTAGCTTTATC 609
Query 474 AGATGATGATTCAAGAGGGTTCTCAGTTTCGAAAGACGGTACTATTCTGCATTGGGATGT 533
||||||||||| ||||| || |||| ||| ||||| |||||| || |||||||||||||
Sbjct 610 GGATGATGATTCTAGAGGATTTTCAGCTTCAAAAGATGGTACTGTTATGCATTGGGATGT 669
Query 534 ATCTTCTGGTAAAAGTGATGAGTACAAATGGCCAAGCGATGAAGTTTTGAAGTCTCACGG 593
|||||||||||||||||| | |||| ||||||||| |||||| || |||||||||| ||
Sbjct 670 ATCTTCTGGTAAAAGTGACAAATACATATGGCCAAGTGATGAAATTCTGAAGTCTCATGG 729
Query 594 GTT-AAAGTTCCAGGAATCTTGGTATACAAGACATAACAAACAATCTCTAGCATTAGCTG 652
| | ||| | || | || | ||| || ||| | || | ||||||| || |||||||
Sbjct 730 GATGAAAATGAGAG-AGCCTCGAAATAAAAAACACAGCAGAGAATCTCTTGCTTTAGCTG 788
Query 653 TTAGCTCTGATGGCCGGTATTTAGCGACTGGAGGAGTTGATTGCCATGTTCAT-TTGTGG 711
||||||||||||| || ||||| || |||||||||||||| | ||||||||| || |||
Sbjct 789 TTAGCTCTGATGGTCGTTATTTGGCCACTGGAGGAGTTGACCGTCATGTTCATATT-TGG 847
Query 712 GATATCCGAACACGAGAGCATGTCCAGGCTTTTACAGGTCACTGTGG-CATTGTTTCTAG 770
||| | || || ||||||||||||||||| ||| |||||||| | | || |||||| |
Sbjct 848 GATGTTCGTACCCGAGAGCATGTCCAGGCCTTTCCAGGTCACAG-GAACACCGTTTCTTG 906
Query 771 TCTATGCTTT-AGAGAAGGAACTGCAGAACTCTTTTCTGGTTCATATGATGGAACAT-T- 827
|||||| ||| ||| | |||||| ||||| ||| ||||||||||| |||| ||| || |
Sbjct 907 TCTATG-TTTCAGATACGGAACTTCAGAAGTCTATTCTGGTTCATTTGATAGAA-ATGTG 964
Query 828 AAGTATATGGAATGCAGAACATAGAA-CATATATAGAATCATG-TTTTGGACACCAGTCT 885
||| | ||||||| |||| ||| || | | | || | | || ||||||||||||| |
Sbjct 965 AAGG-TGTGGAATGTAGAAGATA-AAGCGTTTGTA-ACTGATAATTTTGGACACCAGGGT 1021
Query 886 GAACTTCTATCCATTGATGCT-CTAG-GGAGGGAGCGTGTTCTCA-GTGTTGGACGCGAT 942
||| ||||| ||||||||| | || | ||| |||||||| || | | |||||| | |||
Sbjct 1022 GAAGTTCTAGCCATTGATG-TGCT-GCGGAAGGAGCGTGCACTTACG-GTTGGAAGAGAT 1078
Query 943 AGAACAATGCAGTTAT-ATAAGGTTCCCGAGTCTA-CTCGGT-TGATCTATCGAGCTTCC 999
||||| |||| || || ||||||| || ||| ||| | || | || ||||||| ||| ||
Sbjct 1079 AGAACCATGCTGT-ATCATAAGGTGCCTGAGACTAGC-CG-TATGGTCTATCGTGCT-CC 1134
Query 1000 -GAATCAAATTTTGAGTGCTGCTGTTTTGTTAAT-AGTGATGAGTTTTTGTCCGGATCAG 1057
| |||| | ||||| |||||||||| | | | | | |||||| |||| || || |
Sbjct 1135 TGCATCATCTCTTGAGAGCTGCTGTTTCATCAGTGA-TAATGAGTACCTGTCTGGTTCGG 1193
Query 1058 ATAATGGAAGTATTGCACTTTGGTCCATTTTGAAAAAGAAACCAGTGTTTATCGTTAACA 1117
||||||||| | |||| |||||| ||| || ||||||||||| ||||| || || ||
Sbjct 1194 ATAATGGAACTGTTGCTCTTTGGGGCATGTTAAAAAAGAAACCGGTGTTCATTGTCAAGG 1253
Query 1118 ATGCTCA 1124
|||||||
Sbjct 1254 ATGCTCA 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5