BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21140.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492773 jgi|Araly1|492773|fgenesh2_kg.7__2206__AT4G21140.1 941 0.0
> Ahg492773 jgi|Araly1|492773|fgenesh2_kg.7__2206__AT4G21140.1
Length=741
Score = 941 bits (509), Expect = 0.0
Identities = 655/723 (91%), Gaps = 20/723 (3%)
Strand=Plus/Plus
Query 1 ATGATCAGATTCGCGAGACCAAAACCTATAATTGACTCAGTGAGTTACAATCTTCTCCAG 60
|||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1 ATGATCCGATTCGCGAGACCAAAACCTATAATCGACTCAGTGAGTCACAATCTTCTCCAG 60
Query 61 AAATGTTACGCTAGTGGAACCCCCAAAGGAAAATCGAAGCTGAAGACAGGCCAATCATTG 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 61 AAATGTTACGCTAGTGGAACCCCTAAAGGAAAATCGAAGCTGAAGACAGGCCAACCATTG 120
Query 121 AAACGCAACAAACTCACAATCAAAAAAGGC---GGT-G-GAAACGGCGG-T---GGCAGA 171
||||||||||||||||||||||| |||||| ||| | || |||||| | || | |
Sbjct 121 AAACGCAACAAACTCACAATCAAGAAAGGCGGAGGTGGTGATGCGGCGGTTAAGGGAAAA 180
Query 172 GG-TG-GTGATGAGGTGGATAAGGGAAA-AGGAAGAATCTCA-GATCAATGCATAAACGC 227
|| | |||| | ||| | |||| | |||| | | | |||||||||||||||||
Sbjct 181 GGAAGAATGATCA--CAGAT--GAGAAACA-GAAG-CTAT-ACGATCAATGCATAAACGC 233
Query 228 TCCTTGTCCTGTTCGTTACCTGAGACCTAAGGAAAGAGAGCGAGAAGCGAGACGAGAGAA 287
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 234 TCCTTGTCCTGTTCGTTACCTGAGACCTAAGGAAAGAGAGCGAGAAGCGAAACGAGAGAA 293
Query 288 GCTAGGGCTAATCAGTAAAGCGAGGCAAAAAGAGATTGATTTTCAGAAGAAAGGTGGATC 347
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ATTAGGGCTAATCAGCAAAGCGAGGCAAAAAGAGATTGATTTTCAGAAGAAAGGTGGATC 353
Query 348 CTTTACGATGGGAGTTACTACTGCGCCGATGAGGATTGGGACTCCAGGATTGGATTACAT 407
||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 354 TTTTACTATGGGAGTTACTACTGAGCCGATGAGAATTGGGACTCAAGGATTGGATTACAT 413
Query 408 TTCGTTAGGGATTTTTACGGAAGATGAGTTACCAAAGTATAAGGTTACAGTGGAGGATGG 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTCGTTAGGGATTTTTACGGAAGATGAGTTACCAAAGTATAAGGTTACAGTGGAGGATGG 473
Query 468 GATTAGACTTGCGAAAGAGTATAGTAGAGTGCTTATGAGAGAGCATAGAGCGAGACGTGT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GATTAGACTTGCGAAAGAGTATAGTAGAGTGCTTATGAGAGAGCATAGAGCGAGACGTGT 533
Query 528 AGCGGAGATTAGTTTGATGAAGATGAGGAACGCTGCGGTTGAGGCATTGCCGGAGAATTT 587
||| ||||||| |||| ||||| ||||||| |||||| |||||||||||||||| |||||
Sbjct 534 AGCCGAGATTAATTTGGTGAAGTTGAGGAAAGCTGCGATTGAGGCATTGCCGGATAATTT 593
Query 588 GAAGAAGGCGGCTTTAGTGCGTGATTTGACTCCGTTTCCGGTGAGTCGAGGTACGGCTAC 647
|| ||||| ||| || | |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 594 GAGGAAGGGGGCGTTGGAGCGTGATTTGACTCCGTTTCCGGTGAATCGAGGTTTGGCTAC 653
Query 648 GCTTACTCCACCTATTGAAGGGTATTTGGAGAGGATTATGAATGCTGCGGCTAGGAAGAG 707
||||| || |||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 654 TCTTACGCCGCCTATTGAAGGGTATTTGGAGAAGATTATGAATGCGGCGGCTAAGAAGAG 713
Query 708 CTC 710
|||
Sbjct 714 CTC 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5