BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21150.1
Length=2437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492772 jgi|Araly1|492772|fgenesh2_kg.7__2205__AT4G21150.1 3541 0.0
> Ahg492772 jgi|Araly1|492772|fgenesh2_kg.7__2205__AT4G21150.1
Length=2287
Score = 3541 bits (1917), Expect = 0.0
Identities = 2166/2283 (95%), Gaps = 29/2283 (1%)
Strand=Plus/Plus
Query 17 TCCTAGGCTTACCTCAAACCTCAGTCTCCGTTGACTACTGAGACTCGTCGACCTCTGATC 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCCTAGGCTTACCTCAAACCTCAGTCTCCGTTGACTACTGAGACTCGTCGACCTCTGA-- 58
Query 77 CGCTTCTTCGACTATACGGATCTACTTCCGATCTTGATGATGGCCGGAGGTAACGTACGG 136
|| ||| | | | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 59 ----TC--CGA-T-T-C-GATCTACTTCCGATCTTGATGATGGCCGGAGGTGGCGTACGA 108
Query 137 TTTCTGGTTTTGATACTCGCCGTAGCAATTTGCGGTGCTGCTTCTGTTTTCCAGCCGATC 196
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 109 TTTCTGGTGTTGATACTCGTTGTAGCAATTTGCGGTGCTGCTTCTGTTTTCCAGCCGATC 168
Query 197 TCAGACTCTCACCGATCTGCGGCTCTGGATGTCTTCGTACCAGTCGATGGATCATACAAA 256
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 169 TCAGACTCTCACCGATCTGCGGCTGTGGATGTCTTCGTACCAGTCGATGGATCATACAAA 228
Query 257 AGCTTGGAGGAGGCATATGAAGCATTAAAGACTTTGGAGATTCTTGGAATTGATAAAAAG 316
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 AGCTTGGATGAGGCATATGAAGCATTAAAGACTTTGGAGATTCTTGGAATTGATAAAAAG 288
Query 317 TCTGATCTTAGCTCAAAGACTTGTGAGAATGTGGTTAAAGTTCTTCAGTCGTCTTCTTCT 376
|||||| |||||||| ||||||||||||||| |||||||||||| |||||||||||||
Sbjct 289 TCTGATTTTAGCTCATCGACTTGTGAGAATGTCGTTAAAGTTCTTGGGTCGTCTTCTTCT 348
Query 377 ACTCTTAAGGATGCATTTTATGCGTTAAACGTTAATGGGATTCTAAAATGTAAAATTGGT 436
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 349 ACTCTTAAGGATGCATTTTATGCGTTAAACATTAATGGGATTCTGAAATGTAAAATTGGT 408
Query 437 GAAGCTGGTCCTAAGGACATTGTTTCTCAACTTCAAGCTGGTGTTAAAGATGCGAAGCTA 496
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 409 GAAGCTGGTCCTAAGGACATTGTTTCTCAACTTCAAGCTGGTGTTAAAGATGCCAAGTTA 468
Query 497 TTGCTTGATTTCTATTATTCTGTCAGAGGCTTGGTGCTGGCTAAGGAGCAATTTCCTGGA 556
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 TTGCTTGACTTCTATTATTCTGTCAGAGGCTTGGTGCTGGTTAAGGAGCAATTTCCTGGA 528
Query 557 ACTCATATAAGTCTTGGAGATGCCGAAGCCATTTTCCGTTCCATCAAGTCTCTTAGCCAG 616
|| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 529 GCTGATATAAGTCTTGGAGATGCTGAAGCCATTTTTCGTTCCATCAAGGCTCTTAGCCAA 588
Query 617 AGTGATGGAAGATGGCGCTACAGCTCCAACAATCCCGAATCAAGCACTTTTGCTGCTGGC 676
|||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||||||
Sbjct 589 AGTGATGGAAGATGGCGCTATAGCTCCAGCAATCCAGAATCAAGCACCTTTGCTGCTGGC 648
Query 677 TTAGCCTATGAAACGCTTGCTGGAGTGATTTCATTAGCACCTTCAGAGTTTGATCCATCT 736
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 649 TTAGCCTACGAAACGCTTGCTGGAGTGATTTCATTAGCACCTTCAGAGCTTGATCCATCT 708
Query 737 TTGATCCAGTCGGTGAAGACGGGTATCCTGAAGCT-TTCTGACAGTATCCAAAAA----- 790
||||||||| || |||||| ||||||||||||||| || ||||||||||||||||
Sbjct 709 TTGATCCAGACGTTGAAGAAGGGTATCCTGAAGCTATT-TGACAGTATCCAAAAATTTGG 767
Query 791 TATG-ATGATGGGACATTTTATTTTGATGAGAAGTCTGTTGATGCAAGTCAAGGCCCGAT 849
|||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 768 TATGCACGATGGGACATTTTACTTCGATGAGAAGTCTGTTGATGCAAGTCAAGGCCCGAT 827
Query 850 CTCAACAACTGCATCAGTTATTAGAGGGCTCACGTCATTTGCAGCTTCAGAATCCACAGG 909
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CTCAACAACTGCATCAGTAATTAGAGGGCTCACGTCATTTGCAGCTTCAGAATCCACAGG 887
Query 910 ATTGAACCTTCCAGGTGATAAGATAGTTGGTCTGGCCAAATTCTTTCTGGGTGTTGGAAT 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 ATTGAACCTTCCAGGTGATAAGATAGTTGGTCTGGCCAAATTCTTTCTGGGTGTTGGAAT 947
Query 970 TCCTGGTGATGCCAAGGACTTCTTCAACCAAATAGATGCACTAGCTTGTTTGGAAGACAA 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TCCTGGTGATGCCAAGGACTTCTTCAACCAAATAGATGCACTAGCTTGTTTGGAAGACAA 1007
Query 1030 CAAGTTTTCTGTTCCACTCATCTTGTCTCTTCCATCCACTGTCATTTCATTGACAAAGAA 1089
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1008 CAAGTTTTCTGTCCCACTCATCTTGTCTCTTCCATCTACTGTCATTTCATTGACAAAGAA 1067
Query 1090 AGAGCCTCTGAAGGTTAAAGTTAGCACTGTACTGGGTTCGAAGGCACCAGCTCTTAGTGT 1149
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1068 AGAGCCTCTGAAGGTTAAAGTGAGCACTGTACTGGGTTCGAAGGCACCAGCTCTTAGTGT 1127
Query 1150 GAAGCTTACACAAGCTCTAAGTTCTAAGTCAGTGGATTCATCTGTAATTAATAACCAGGA 1209
|||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 1128 GAAGCTCACACAAGCTCTAAGTTCTAAATCAGTGGATTCGTCTGTAATAAATAACCAGGA 1187
Query 1210 GCTTAAGTTTGACGCTGACAGTGCAACGTACTTCCTGGACTCCTTTCCCAAGAACTTTGA 1269
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GCTTAAGTTTGACTCTGACAGTGCAACGTACTTCCTGGACTCCTTTCCCAAGAACTTTGA 1247
Query 1270 CATTGGAAAATATACTTTTGTATTTAAGATTGT-GCTGGATGAATCAGCACATGAGAAAG 1328
| ||||||||||||| ||||||||| ||||| | | ||||||| ||||||||||||||||
Sbjct 1248 CGTTGGAAAATATACATTTGTATTTGAGATTTTAG-TGGATGATTCAGCACATGAGAAAG 1306
Query 1329 TATACATAACTGAAGCTCAAACAAAAGTGCCTATAGCTGCCACAGGAGCTATTAGCATTG 1388
|||||||||| ||||||||||||||||||||| ||||||||| ||||| |||| ||||||
Sbjct 1307 TATACATAACCGAAGCTCAAACAAAAGTGCCTGTAGCTGCCATAGGAGTTATTGGCATTG 1366
Query 1389 AAAATGCAGAAATTGCTGTACTTGACAGTGACATTGGAAGCGTTGAATCTCAGAAAAAGC 1448
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1367 AAAATGCAGAAATTGCTGTACTTGACAGTGACATTGGGAGCGTTGAATCTCAGAAAAAGC 1426
Query 1449 TAGATTTAACTAAAGATGGAGCGGTATCATTATCAGCAAACCACCTTCAAAAGCTACGCC 1508
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1427 TAGATTTAACTAAAGATGGAGAGGTATCATTATCAGCAAACCACCTTCAAAAGCTACGCC 1486
Query 1509 TGTCATTCCAGTTAACTACTCCACTTGGCAATGCGTTTAAGCCACACCAGGCATTTTTCA 1568
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1487 TGTCGTTCCAGTTAACTACTCCACTTGGCAATTCGTTTAAGCCACACCAGGCATTTTTCA 1546
Query 1569 AGCTGAAACATGAGTCACAGGTCGAGCATATCTTTCTCGTGAAAACTTCTGGAAAGAAGT 1628
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1547 AGCTGAAACATGAGTCACAGGTCGAGCATATCTATCTCGTGAAAACTTCTGGAAAGAAGT 1606
Query 1629 CTGAATTAGTTCTAGATTTTCTTGGATTGGTTGAGAAGCTCTACTACCTCTCTGGTAAAT 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 CTGAATTAGTTCTAGATTTTCTTGGATTGGTTGAGAAGCTCTACTACCTCTCTGGTAAAT 1666
Query 1689 ATGAGATACAGCTAACCATTGGAGATGCTTCTATGGAGAACTCTTTACTGAGTAATATTG 1748
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1667 ATGAGATCCAGCTAACTATTGGGGATGCTTCTATGGAGAACTCTTTACTGAGTAATATTG 1726
Query 1749 GTCACATTGAACTAGACCTACCAGAGCGTCCAGAGAAGGCGACTCGTCCTCCTCTACAGT 1808
| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1727 GCCACATCGAACTAGACCTACCAGAGCGTCCAGAGAAGGCGCCTCGTCCTCCTCTACAAT 1786
Query 1809 CTACTGAGCCTTACTCAAGATATGGGCCAAAAGCTGAAATATCACACATATTCAGGATTC 1868
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CTACTGAACCTTACTCAAGATATGGGCCAAAAGCTGAAATATCACACATATTCAGGATTC 1846
Query 1869 CTGAAAAGCTTCCAGCAAAGCAGCTCTCACTAGTTTTCTTGGGTGTTATCGTTCTCCCAT 1928
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1847 CTGAAAAGCTTCCAGCAAAGCAGCTCTCACTAGTTTTCTTGGGTGTTATCGTCCTCCCAT 1906
Query 1929 TCATCGGTTTCCTGATTGGGCTTACGCGGTTGGGAGTGAACATAAAGAGCTTCCCATCGT 1988
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1907 TCATCGGTTTCCTGATAGGGCTTACGCGGTTGGGAGTGAACATAAAGAGCTTCCCATCGT 1966
Query 1989 CGACTGGATCTGCAATATCCGCTTTACTTTTCCACTGCGGAATTGGAGCTGTTTTGCTTC 2048
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1967 CGACTGGATCTGCAATATCGGCTTTACTTTTCCACGGCGGAATTGGAGCTGTTTTGCTTC 2026
Query 2049 TATATGTGCTATTCTGGTTGAAGTTGGATCTATTCACGACTCTCAAGGCACTTTCTTTGT 2108
| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 2027 TCTATGTGCTTTTCTGGTTAAAGTTGGATCTGTTCACGACTCTCAAGGCACTTTCTTTGT 2086
Query 2109 TGGGAGTGTTTCTGTTGTTCGTGGGACACAGAACACTATCTCAACTTGCATCAGCATCAA 2168
|||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||| |
Sbjct 2087 TGGGAGTGTTTCTGTTGTTCGTCGGACACAGAACACTATCTCAGCTCGCAGCAGCATCGA 2146
Query 2169 ACAAGTTGAAATCTGCTTGAAGAAGAAGAACT-CACTATGAAGGATCttttttt--GGTT 2225
|||||||||||||||||||||||||| ||| | | ||||| |||||||||||| ||||
Sbjct 2147 ACAAGTTGAAATCTGCTTGAAGAAGA-GAAATTCGTTATGACGGATCTTTTTTTTTGGTT 2205
Query 2226 TATGCGTATTTTCAGTTTTGTAGTATTGCTTATA--GATTATGGTGATAGACAAATTCAA 2283
||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2206 TATGCGTATTT-CAGTTTTGTAGTGTTGCTTATATAGATTATGGTGATAGACAAATTCAA 2264
Query 2284 AAG 2286
|||
Sbjct 2265 AAG 2267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91835580695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5