BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G21160.1 Length=1377 Score E Sequences producing significant alignments: (Bits) Value Ahg492770 jgi|Araly1|492770|fgenesh2_kg.7__2203__AT4G21160.1 1829 0.0 Ahg490180 jgi|Araly1|490180|fgenesh2_kg.6__3314__AT4G05330.1 1038 0.0 > Ahg492770 jgi|Araly1|492770|fgenesh2_kg.7__2203__AT4G21160.1 Length=1216 Score = 1829 bits (990), Expect = 0.0 Identities = 1159/1236 (94%), Gaps = 30/1236 (2%) Strand=Plus/Plus Query 32 GTTCATCTTGAATTTGTG--TC-CCAAGAACATAtctctctctctctct-ctcCTCACCT 87 |||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||| Sbjct 1 GTTCATCTTGAATTTGTGTCTCTCCAAGAACATATCTCTCTCTCTCTCTCCTCCT--CCT 58 Query 88 TGG-A-TTCTCTGTTTGATGATTGCTAG-TTCTTTAGAAGAGCAATGAGTTATTCTGGAG 144 ||| | | ||||||||||||||| ||| || |||||||||||||||||||| | | Sbjct 59 TGGTAGAT-TCTGTTTGATGATTGTTAGCTT-TTTAGAAGAGCAATGAGTTA-T-T---- 110 Query 145 CCGGACTCGGAAAGCCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTG 204 || ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 111 -----CT----AAGTCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTG 161 Query 205 ATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATTG 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 162 ATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATCG 221 Query 265 GAGTGTTTATATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAA 324 ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| Sbjct 222 GAGTGTTTATATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGCACTCATATCTCAA 281 Query 325 AGGTCTTATCCGTGACATTGGATGAATGGTCAGATGAAGAAGTCGATTCGATGATTGAAA 384 |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 282 AGGTCTTATCTGTGACACTGGATGAATGGTCAGATGAAGAAGTCGATTCTATGATTGAAA 341 Query 385 TTGGAGGAAATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGAAGGTAGCTCTA 444 ||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||||| Sbjct 342 TTGGAGGAAATGCCTCTGCGAATTCAATTTACGAGGCGTTTATACCCGAAGGAAGCTCTA 401 Query 445 AGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCGAAATATGAGC 504 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 402 AGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCTAAATATGAGC 461 Query 505 ACCAAGAGTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGA 564 |||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 462 ACCAAGAGTTTCTGAAACCAAGCTTGCGAATCACATCTGTGAGGGGCTCGAGTACAAAGA 521 Query 565 CTCCAGCATTTCTTTCATCGAGTCTATCTAAAAAGATTGTTGATAGCTTTCGCACTAATT 624 | || ||| ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct 522 GTACACCATATCTTTCATCAAGTATATCTAAAAAGATTATTGATAGCTTTCGCACTAATT 581 Query 625 CATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGA 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 582 CATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTTA 641 Query 685 CTATTAAAAAGGGTACCAATATGGCCATCCGAGATATGATGTCAAGTGATCCCTATGTTG 744 |||| |||||||||| |||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 642 CTATCAAAAAGGGTAACAATTTAGCCGTCCGAGATATGATGTCAAGTGATCCCTATGTTG 701 Query 745 TGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTG 804 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 702 TGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTGAACCCGG 761 Query 805 TCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAG 864 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 TCTGGAACGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAG 821 Query 865 TGTTTGACTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCC 924 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 822 TGTTTGATTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCC 881 Query 925 AGCCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGA 984 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 AACCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGA 941 Query 985 TTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTG 1044 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 942 TTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTG 1001 Query 1045 CAGATGGTAAAGTGAAGCAAGAGGTTCAAATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1104 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1002 CAGATGGTAAAGTGAAACAAGAGGTTCAGATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1061 Query 1105 TAGAACTAGAAATGGAGTGGCTACCTCTTGAGCAATAAATAATCAACTATATAATAGGGT 1164 |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1062 TAGAACTAGAAATGGAGTGGCTGCCTCTTGACCAATAAATAATCAACTATATAATAGGGT 1121 Query 1165 CATTATATATAACCAAACAAATTTTATTACTGTATTCATT-ATTTTAACATT-CCCCC-T 1221 ||||||||||| | || ||||| |||||| |||||||||| ||| ||||||| ||||| | Sbjct 1122 CATTATATATATC-AATCAAATCTTATTATTGTATTCATTCATTATAACATTTCCCCCCT 1180 Query 1222 TGGTTCTTGTTTGACAAATTTTTGAAACTTTGATCT 1257 | |||||||||||||||||||||||||||| ||||| Sbjct 1181 TTGTTCTTGTTTGACAAATTTTTGAAACTTCGATCT 1216 > Ahg490180 jgi|Araly1|490180|fgenesh2_kg.6__3314__AT4G05330.1 Length=1275 Score = 1038 bits (562), Expect = 0.0 Identities = 899/1060 (85%), Gaps = 29/1060 (3%) Strand=Plus/Plus Query 97 TGTTTGATGATTGCT-AGTTCTT--TAGAAGAGCAATGAGTTATTCTGGAGCCGGACTCG 153 ||||||||||||| | ||| || |||||||||||||| ||| || ||||||||||| Sbjct 67 TGTTTGATGATTGTTGGGTT-TTGAAAGAAGAGCAATGAGCAATTATGCAGCCGGACTCG 125 Query 154 GAAAGCCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAG 213 | |||||||||||||||||||||||||| || |||||||||| |||| |||||||||||| Sbjct 126 GTAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAG 185 Query 214 TCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATTGGAGTGTTTA 273 |||||||||||||||||||| | |||||||| ||||| ||||| ||||| || || || | Sbjct 186 TCTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGGGTATTCA 245 Query 274 TATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAAAGGTCTTAT 333 | |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| || | Sbjct 246 TTTGCTTAAAATGTTGCGGTGTGCACAGAAGCCTCGGCACTCATATCTCAAAGGTTTTGT 305 Query 334 CCGTGACA-TTGGATGAATGGTCAGATGAAGAAGTCGATTCGATGATTGAAATTGGAGGA 392 | |||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 306 CTGTGACACTTG-ATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGGAGGA 364 Query 393 AATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGA-AGGTAGCTCTAAGCCTGG 451 ||||| ||||| |||||||||||||| || ||| | ||||| | | ||||||||||||| Sbjct 365 AATGCGTCTGCTAATTCAATTTACGAAGCTTTTGTACCTGACACAT-GCTCTAAGCCTGG 423 Query 452 ACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCGAAATATGAGCACCAAGA 511 |||||||| ||||||||||||||||||||| ||||||||| | |||||||| | ||||| Sbjct 424 ACCTGATGTTAGTCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCAAGA 483 Query 512 GTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGACTCCAGC 571 ||||||||| |||||||||||||| ||||||| || |||| | ||||||| | |||| Sbjct 484 GTTTCTGAAGCCAAGCTTGCGGATTACATCCGGGAAATGCTC-A--ACAAAGAGTTCAGC 540 Query 572 ATTTCTTTCATCGAGTCTATCTAAAAAGATTGTTGATAGCTTTCGCACTAATTCATCATC 631 |||||| |||| ||||| |||| |||||| | ||||| |||||||| ||||||||||| Sbjct 541 TTTTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATC 600 Query 632 GCAACAGCCGCA-ACTT--G-AAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGACTA 687 | ||| | | | || | |||| ||||| |||||||||||||||||||||||||||| Sbjct 601 --A-CAGAAG-ATATTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTA 656 Query 688 TTAA-AAAGGGTACCAA-TATGGCCATCCGAGATATGATGTCAAGTGATCCCTATGTTGT 745 |||| ||||| ||| || | | || ||| |||| ||||||||||||||||| |||||||| Sbjct 657 TTAAGAAAGG-TACTAACT-TAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGT 714 Query 746 GTTGACTCTAGGACAA-CAGAAGGCT-CA-ATCTACTGTAGTGAAGAGCAACTTAAACCC 802 ||||| |||||| || || || || || | | ||||| ||||| || || || ||||| Sbjct 715 GTTGAATCTAGGG-AAGCAAAAA-CTTCAGA-CAACTGTTGTGAATAGTAATTTGAACCC 771 Query 803 TGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCA 862 || |||||| | ||||||||||| ||||||||| | | ||||||| | ||||||||||| Sbjct 772 GGTATGGAATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCA 831 Query 863 AGTGTTTGACTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATAT 922 ||||| ||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 832 AGTGTATGATTATGATACATTTTCTGCTGATGACATAATGGGGGAAGCAGAGATTGATAT 891 Query 923 CCAGCCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCA 982 ||| ||| |||| |||||||||||||||||||| || || ||||||||||| |||||||| Sbjct 892 CCAACCTTTGATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCA 951 Query 983 GATTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACAT 1042 |||||| |||||||| |||||||| || ||| | || ||||| || || ||||| ||||| Sbjct 952 GATTGGGAAATGGCTAAAATCGCATGATAATCCACTAATAGATGACAGTATCATTAACAT 1011 Query 1043 TGCAGATGGTAAAGTGAAGCAAGAGGTTCAAATCAAGCTTCAGAATGTTGAATCTGGTGA 1102 || ||||| |||||||| || |||||||| ||||||||||||||||| || ||||| || Sbjct 1012 TGTTGATGGGAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGA 1071 Query 1103 ACTAGAACTAGAAATGGAGTGGCTACCTCTTGAGCAATAA 1142 | |||| ||||||||||| |||||||| ||||| |||||| Sbjct 1072 ATTAGAGCTAGAAATGGAATGGCTACCACTTGACCAATAA 1111 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51542183784 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5