BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21160.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492770 jgi|Araly1|492770|fgenesh2_kg.7__2203__AT4G21160.1 1829 0.0
Ahg490180 jgi|Araly1|490180|fgenesh2_kg.6__3314__AT4G05330.1 1038 0.0
> Ahg492770 jgi|Araly1|492770|fgenesh2_kg.7__2203__AT4G21160.1
Length=1216
Score = 1829 bits (990), Expect = 0.0
Identities = 1159/1236 (94%), Gaps = 30/1236 (2%)
Strand=Plus/Plus
Query 32 GTTCATCTTGAATTTGTG--TC-CCAAGAACATAtctctctctctctct-ctcCTCACCT 87
|||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||
Sbjct 1 GTTCATCTTGAATTTGTGTCTCTCCAAGAACATATCTCTCTCTCTCTCTCCTCCT--CCT 58
Query 88 TGG-A-TTCTCTGTTTGATGATTGCTAG-TTCTTTAGAAGAGCAATGAGTTATTCTGGAG 144
||| | | ||||||||||||||| ||| || |||||||||||||||||||| | |
Sbjct 59 TGGTAGAT-TCTGTTTGATGATTGTTAGCTT-TTTAGAAGAGCAATGAGTTA-T-T---- 110
Query 145 CCGGACTCGGAAAGCCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTG 204
|| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 -----CT----AAGTCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTG 161
Query 205 ATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATTG 264
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 162 ATAACCGAGTCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATCG 221
Query 265 GAGTGTTTATATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAA 324
||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 222 GAGTGTTTATATGCTTAAAATGTTGCGGTGTGCACAGAAGCCTTGGCACTCATATCTCAA 281
Query 325 AGGTCTTATCCGTGACATTGGATGAATGGTCAGATGAAGAAGTCGATTCGATGATTGAAA 384
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 282 AGGTCTTATCTGTGACACTGGATGAATGGTCAGATGAAGAAGTCGATTCTATGATTGAAA 341
Query 385 TTGGAGGAAATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGAAGGTAGCTCTA 444
||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||
Sbjct 342 TTGGAGGAAATGCCTCTGCGAATTCAATTTACGAGGCGTTTATACCCGAAGGAAGCTCTA 401
Query 445 AGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCGAAATATGAGC 504
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 402 AGCCTGGACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCTAAATATGAGC 461
Query 505 ACCAAGAGTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGA 564
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 462 ACCAAGAGTTTCTGAAACCAAGCTTGCGAATCACATCTGTGAGGGGCTCGAGTACAAAGA 521
Query 565 CTCCAGCATTTCTTTCATCGAGTCTATCTAAAAAGATTGTTGATAGCTTTCGCACTAATT 624
| || ||| ||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 522 GTACACCATATCTTTCATCAAGTATATCTAAAAAGATTATTGATAGCTTTCGCACTAATT 581
Query 625 CATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGA 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 582 CATCATCGCAACAGCCGCAACTTGAAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTTA 641
Query 685 CTATTAAAAAGGGTACCAATATGGCCATCCGAGATATGATGTCAAGTGATCCCTATGTTG 744
|||| |||||||||| |||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 642 CTATCAAAAAGGGTAACAATTTAGCCGTCCGAGATATGATGTCAAGTGATCCCTATGTTG 701
Query 745 TGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTAAACCCTG 804
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 702 TGTTGACTCTAGGACAACAGAAGGCTCAATCTACTGTAGTGAAGAGCAACTTGAACCCGG 761
Query 805 TCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAG 864
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TCTGGAACGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCAAG 821
Query 865 TGTTTGACTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCC 924
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TGTTTGATTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATATCC 881
Query 925 AGCCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGA 984
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AACCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCAGA 941
Query 985 TTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACATTG 1001
Query 1045 CAGATGGTAAAGTGAAGCAAGAGGTTCAAATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1104
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1002 CAGATGGTAAAGTGAAACAAGAGGTTCAGATCAAGCTTCAGAATGTTGAATCTGGTGAAC 1061
Query 1105 TAGAACTAGAAATGGAGTGGCTACCTCTTGAGCAATAAATAATCAACTATATAATAGGGT 1164
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1062 TAGAACTAGAAATGGAGTGGCTGCCTCTTGACCAATAAATAATCAACTATATAATAGGGT 1121
Query 1165 CATTATATATAACCAAACAAATTTTATTACTGTATTCATT-ATTTTAACATT-CCCCC-T 1221
||||||||||| | || ||||| |||||| |||||||||| ||| ||||||| ||||| |
Sbjct 1122 CATTATATATATC-AATCAAATCTTATTATTGTATTCATTCATTATAACATTTCCCCCCT 1180
Query 1222 TGGTTCTTGTTTGACAAATTTTTGAAACTTTGATCT 1257
| |||||||||||||||||||||||||||| |||||
Sbjct 1181 TTGTTCTTGTTTGACAAATTTTTGAAACTTCGATCT 1216
> Ahg490180 jgi|Araly1|490180|fgenesh2_kg.6__3314__AT4G05330.1
Length=1275
Score = 1038 bits (562), Expect = 0.0
Identities = 899/1060 (85%), Gaps = 29/1060 (3%)
Strand=Plus/Plus
Query 97 TGTTTGATGATTGCT-AGTTCTT--TAGAAGAGCAATGAGTTATTCTGGAGCCGGACTCG 153
||||||||||||| | ||| || |||||||||||||| ||| || |||||||||||
Sbjct 67 TGTTTGATGATTGTTGGGTT-TTGAAAGAAGAGCAATGAGCAATTATGCAGCCGGACTCG 125
Query 154 GAAAGCCTGGCTCAGGTAAAAGGAGAATAAGGGATCTTTTAACTCAATCTGATAACCGAG 213
| |||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||
Sbjct 126 GTAAGCCTGGCTCAGGTAAAAGGAGAATCAGAGATCTTTTAAATCAACCTGATAACCGAG 185
Query 214 TCTGCGCTGATTGTGGCGCTCCAGATCCTAAGTGGGCGTCAGCTAATATTGGAGTGTTTA 273
|||||||||||||||||||| | |||||||| ||||| ||||| ||||| || || || |
Sbjct 186 TCTGCGCTGATTGTGGCGCTTCTGATCCTAAATGGGCATCAGCAAATATCGGGGTATTCA 245
Query 274 TATGCTTAAAATGTTGTGGTGTCCACAGAAGCCTTGGCAGTCATATCTCAAAGGTCTTAT 333
| |||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| || |
Sbjct 246 TTTGCTTAAAATGTTGCGGTGTGCACAGAAGCCTCGGCACTCATATCTCAAAGGTTTTGT 305
Query 334 CCGTGACA-TTGGATGAATGGTCAGATGAAGAAGTCGATTCGATGATTGAAATTGGAGGA 392
| |||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 306 CTGTGACACTTG-ATGAATGGTCAGATGAGGAAGTCGATTCCATGATTGAAATTGGAGGA 364
Query 393 AATGCCTCTGCAAATTCAATTTACGAGGCGTTTATTCCTGA-AGGTAGCTCTAAGCCTGG 451
||||| ||||| |||||||||||||| || ||| | ||||| | | |||||||||||||
Sbjct 365 AATGCGTCTGCTAATTCAATTTACGAAGCTTTTGTACCTGACACAT-GCTCTAAGCCTGG 423
Query 452 ACCTGATGCTAGTCATGACCAGCGTATGAGGTTCATTAGGTCGAAATATGAGCACCAAGA 511
|||||||| ||||||||||||||||||||| ||||||||| | |||||||| | |||||
Sbjct 424 ACCTGATGTTAGTCATGACCAGCGTATGAGATTCATTAGGGCAAAATATGAACTGCAAGA 483
Query 512 GTTTCTGAAACCAAGCTTGCGGATCACATCCGTGAGGGGCTCTAGTACAAAGACTCCAGC 571
||||||||| |||||||||||||| ||||||| || |||| | ||||||| | ||||
Sbjct 484 GTTTCTGAAGCCAAGCTTGCGGATTACATCCGGGAAATGCTC-A--ACAAAGAGTTCAGC 540
Query 572 ATTTCTTTCATCGAGTCTATCTAAAAAGATTGTTGATAGCTTTCGCACTAATTCATCATC 631
|||||| |||| ||||| |||| |||||| | ||||| |||||||| |||||||||||
Sbjct 541 TTTTCTTACATCAAGTCTTTCTAGAAAGATCATGGATAGTTTTCGCACAAATTCATCATC 600
Query 632 GCAACAGCCGCA-ACTT--G-AAGGCATGGTTGAGTTTATTGGATTGTTGAAGGTGACTA 687
| ||| | | | || | |||| ||||| ||||||||||||||||||||||||||||
Sbjct 601 --A-CAGAAG-ATATTTCAGGAAGGAATGGTAGAGTTTATTGGATTGTTGAAGGTGACTA 656
Query 688 TTAA-AAAGGGTACCAA-TATGGCCATCCGAGATATGATGTCAAGTGATCCCTATGTTGT 745
|||| ||||| ||| || | | || ||| |||| ||||||||||||||||| ||||||||
Sbjct 657 TTAAGAAAGG-TACTAACT-TAGCAATCAGAGACATGATGTCAAGTGATCCATATGTTGT 714
Query 746 GTTGACTCTAGGACAA-CAGAAGGCT-CA-ATCTACTGTAGTGAAGAGCAACTTAAACCC 802
||||| |||||| || || || || || | | ||||| ||||| || || || |||||
Sbjct 715 GTTGAATCTAGGG-AAGCAAAAA-CTTCAGA-CAACTGTTGTGAATAGTAATTTGAACCC 771
Query 803 TGTCTGGAATGAGGAACTCATGCTCTCTGTTCCTCATAACTATGGCTCAGTGAAATTGCA 862
|| |||||| | ||||||||||| ||||||||| | | ||||||| | |||||||||||
Sbjct 772 GGTATGGAATCAAGAACTCATGCTGTCTGTTCCTGAGAGCTATGGCCCTGTGAAATTGCA 831
Query 863 AGTGTTTGACTATGACACATTTTCTGCTGATGACATAATGGGAGAAGCTGAGATTGATAT 922
||||| ||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 832 AGTGTATGATTATGATACATTTTCTGCTGATGACATAATGGGGGAAGCAGAGATTGATAT 891
Query 923 CCAGCCTCTGATTACATCTGCAATGGCTTTTGGAGACCCTGAAATGTTTGGAGATATGCA 982
||| ||| |||| |||||||||||||||||||| || || ||||||||||| ||||||||
Sbjct 892 CCAACCTTTGATAACATCTGCAATGGCTTTTGGGGATCCAGAAATGTTTGGGGATATGCA 951
Query 983 GATTGGAAAATGGCTGAAATCGCACGACAATGCTCTTATAGAAGATAGCATCATCAACAT 1042
|||||| |||||||| |||||||| || ||| | || ||||| || || ||||| |||||
Sbjct 952 GATTGGGAAATGGCTAAAATCGCATGATAATCCACTAATAGATGACAGTATCATTAACAT 1011
Query 1043 TGCAGATGGTAAAGTGAAGCAAGAGGTTCAAATCAAGCTTCAGAATGTTGAATCTGGTGA 1102
|| ||||| |||||||| || |||||||| ||||||||||||||||| || ||||| ||
Sbjct 1012 TGTTGATGGGAAAGTGAAACAGGAGGTTCAGATCAAGCTTCAGAATGTAGAGTCTGGAGA 1071
Query 1103 ACTAGAACTAGAAATGGAGTGGCTACCTCTTGAGCAATAA 1142
| |||| ||||||||||| |||||||| ||||| ||||||
Sbjct 1072 ATTAGAGCTAGAAATGGAATGGCTACCACTTGACCAATAA 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5