BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21170.1
Length=1897
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890075 jgi|Araly1|890075|Al_scaffold_0007_2061 1515 0.0
> Ahg890075 jgi|Araly1|890075|Al_scaffold_0007_2061
Length=1605
Score = 1515 bits (820), Expect = 0.0
Identities = 920/968 (95%), Gaps = 8/968 (1%)
Strand=Plus/Plus
Query 934 GATTTTATGCGAACAAGGGAGATCCAAGAGTGTTTTTAAATTGATGGAAACAGGTGTTGA 993
|||||| || ||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 642 GATTTTGTGTGAACATGGAAGATCCAAGAGTGTTGTTAAATTGATGGAAACAGGTGTTGA 701
Query 994 AAGCTGCAAGATTTACACTAATCTTGTGGAATGTTATAGCAGAAATGGAGAGTTTGATGC 1053
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 702 AAGCTGCAAGATTTACACCAATCTTGTGGAATGTTATAGCAGAAATGGGGAATTTGATGC 761
Query 1054 TGTGTTTAGTTTAATTCATGAGATGGATGACAAGAAACTAGAGTTGAGTTTTTGTTCTTA 1113
| |||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||
Sbjct 762 CGCGTTTAGTTTAATTCATGAGATGGATGGCAAGAAACTGGAGTTGAGTTTCTCTTCTTA 821
Query 1114 CGGTTGCGTATTAGATGATGCATGTAGATTAGGAGATGCTGAGTTCATTGATAAGGTTCT 1173
|||||||||||| ||| ||||||||||||| |||||||||||||| || |||||||||||
Sbjct 822 CGGTTGCGTATTGGATAATGCATGTAGATTGGGAGATGCTGAGTTGATCGATAAGGTTCT 881
Query 1174 CT-GTTTGATGGTGGAGAAAAAGTTTGTTACTTTAGGTGATTCGGCTGTGAATGATAAAA 1232
| |||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 882 -TGGTTTAATGGTGGAGAAAAAGTTTCTTACTTTAGGTGATTCGGCTGTGAATGATCAAA 940
Query 1233 TCATTGAAAGACTTTGCGATATGGGGAAAACGTTTGCCTCTGAGATGCTTTTCCGTAAAG 1292
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TGATTGAAAGACTTTGCGATATGGGGAAAACGTTTGCCTCTGAGATGCTTTTCCGTAAAG 1000
Query 1293 CCTGCAATGGTGAAACAGTGAGATTGTGGGATTCGACATACGGTTGTATGTTAAAAGCAC 1352
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct 1001 TCTGCAATGGTGAAACAGTGAGATTGCGGGAGTCGACATACGGTTGTATGTTAAAAGCTC 1060
Query 1353 TGTCAAG-AAAGAAGAGAACAAAAGAAGCTGTTGATGTATATCGAATGATTTGTCGGAAA 1411
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TGTCAAGAAAAG-AGAGAACAAAAGAAGCTGTTGATGTATATCGAATGATTTGTCGGAAA 1119
Query 1412 GGTATTACTGTACTTGATGAGAGTTGCTATATCGAATTCGCAAATGCCCTTTGCAGAGAT 1471
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1120 GGTATTAATGTACTTGATGAGAGTTGCTATAACGAATTCGCAAATGCCCTTTGCAGAGAT 1179
Query 1472 GATAATAGCTCAGAGGAAGAAGAGGAATTGCTTGTAGATGTTATAAAGCGCGGAAAAGAA 1531
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GATAATAGCTCAGAGGAAGGAGAGGAATTGCTTGTAGATGTTATAAAGCGCGGAAAAGAA 1239
Query 1532 GATGGAAATCCGCAGAGAAGCTTCTTGATTCGGTTATGGAAATGGAGAAGCGGGAAACTA 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 GATGGAAATCCGCAGAGAAGCTTCTTGATTCGGTTATGGAAATGGAGAAGCGGGAAACTA 1299
Query 1592 GAGAAAGCACTGGTACTACATGAAAAGATAAAGAAA-ATGAAAGGAAGTTTAGATGTGAA 1650
||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 1300 GAGAAAGCACTGGAACTACATGAAAAGATAAA-AAAGATGAAAGGAAGTTTAGATGTTAA 1358
Query 1651 TGCTTATAACGCGGTTCTTGATCGGCTTATGATGAGGCAAAAAGAGATGGTGGAAGAAGC 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 TGCTTATAACGCGGTTCTTGATCGGCTTATGATGAGGCAAAAAGAGATGGTGGAAGAAGC 1418
Query 1711 AGTTGTAGTGTTTGAGTACATGAAAGAGAT-AAATTCAGTGAACAGCAAGAGTTTTACAA 1769
||||| |||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 1419 AGTTGGAGTGTTCGAGTACATGAAAGAGATGAAAT-CAGTGAACAGCAAAAGTTTTACAA 1477
Query 1770 TTATGATTCAAGGGTTGTGTCGTGTGAAGGAGATGAAGAAAGCTATGAGATCCCATGATG 1829
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1478 TTATGATTCAAGGGTTGTGTCGTGTGAAGGAGATGAAGAAAGCTATGAGATCTCATGATG 1537
Query 1830 AAATGTTGAGATTGGGTTTGAAACCTGATTTAGTAACCTATAAGCGTCTTATCTTAGGTT 1889
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1538 AAATGTTGAGATTGGACATGAAACCTGATTTAGTATCCTATAAGCGTCTTATCTTAGGTT 1597
Query 1890 TCAAATGA 1897
||||||||
Sbjct 1598 TCAAATGA 1605
Score = 970 bits (525), Expect = 0.0
Identities = 605/644 (94%), Gaps = 4/644 (1%)
Strand=Plus/Plus
Query 242 ATGGTTCTTA-TCCACACAAGTGTTGGATTCTTCAAACGATTCTCGACTTCAGCGACTCC 300
||||||| || |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1 ATGGTTC-TACTCCACACAAGTGTTGGATTCTTTAAACGATTTTCGACTTCAGCGACTCC 59
Query 301 ATCAACATCCTCTGCTTCCGATTGGAAAACCCAACAGACTCTGTTCCGAGTAGCCACAGA 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 60 ATCAACATCCTCTGCTTCCGATTGGAAAACCCAACAGACTCTGTTCCGATTAGCCACCGA 119
Query 361 AATATCTTCAATTCTCTTACAACGTCGTAACTGGATCACTCATCTCCAATATGTTAAATC 420
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 AATCTCTTCGATTCTCTTACAACGTCGTAACTGGATCAGTCATCTCCAATATGTTAAATC 179
Query 421 CAAGCTCCCAAGGTCAACACTTACTTCACCTGTATTCCTCCAGATCCTCCGTGAAACTCG 480
||||||| ||||||||||||||||||| || |||| ||||||||| |||||||||||||
Sbjct 180 CAAGCTCTCAAGGTCAACACTTACTTCGCCAATATTTCTCCAGATCATCCGTGAAACTCG 239
Query 481 AAAATGCCCTAAAACCACTCTTGATTTCTTCGATTTTGCCAAAACCCATCTTCGGTTCGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 AAAATGCCCTAAAACCACTCTTGATTTCTTCGATTTTGCCAAAACCCATCTCCGGTTCGA 299
Query 541 GCCGGATCTTAAGTCTCATTGTCGAGTAATTGAAGTTGCTGCTGAATCAGGTCTCTTGGA 600
||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||| |||||
Sbjct 300 GCCGGATCTTAAGTCCCATTGTCGGGTAATAGAAGTTGCTACTGAATCAGGTCTGTTGGA 359
Query 601 ACGAGCAGAAATGCTCTTGCGTCCTCTGGTTGAAAC-CAATTCTGTGTCTTTAGTTGTTG 659
||||||||||| |||||||| |||||||||||||| | ||||||||||| |||||||||
Sbjct 360 ACGAGCAGAAACACTCTTGCGGCCTCTGGTTGAAACTC-ATTCTGTGTCTCTAGTTGTTG 418
Query 660 GAGAAATGCATCGGTGGTTTGAAGGTGAAGTTTCACTGTCTGTCTCGCTTAGCTTAGTGC 719
|| ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 419 GATCGATGCATCGGTGGTTTGAAGGTGACGTTTCACTCTCTATCTCGCTTAGCTTAGTGA 478
Query 720 TTGAGTATTATGCCTTAAAGGGTAGTCATCATAATGGTTTGGAAGTGTTTGGTTTTATGA 779
|||||| |||||||||||||||| || | || ||||||||||||||||||||||||||||
Sbjct 479 TTGAGTGTTATGCCTTAAAGGGTTGTTACCAAAATGGTTTGGAAGTGTTTGGTTTTATGA 538
Query 780 GAAGATTGAGACTTTCACCTTCTCAAAGTGCTTATAACTCTCTTCTTGGTTCTCTGGTTA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAAGATTGAGACTTTCACCTTCTCAAAGTGCTTATAACTCTCTTCTTGGTTCTCTGGTTA 598
Query 840 AAGAAAACCAGTTTAGAGTGGCTTTGTGTTTGTATAGTGCCATG 883
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGAAAACCAGTTTAGAGTGGCTTTGTGTTTGTATAGTGCCATG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71266848395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5