BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21180.1
Length=2335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492766 jgi|Araly1|492766|fgenesh2_kg.7__2199__AT4G21180.1 3574 0.0
Ahg477265 jgi|Araly1|477265|fgenesh2_kg.2__2395__AT1G79940.1 1443 0.0
> Ahg492766 jgi|Araly1|492766|fgenesh2_kg.7__2199__AT4G21180.1
Length=2322
Score = 3574 bits (1935), Expect = 0.0
Identities = 2212/2343 (94%), Gaps = 29/2343 (1%)
Strand=Plus/Plus
Query 1 ttcttcttcttcttcttcAGTTTCGCAATTCGATTCCTAAAGTCAGCAGTTTTGTTTCTT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTCTTCGTCTTCTTCAGTTTCGCAATTCGATTCCTAAAGTCAGCAGTTTTGTTTCTT 60
Query 61 CAGTTTCTTCTCAAACCGA-TACTTGAT-CAAGAATCTCTGATTGAAAGGGCTCTTTAAA 118
|| ||||||||| | | | | || | | ||||||||||||| ||||||||| ||
Sbjct 61 CAATTTCTTCTCTGATCAAGT-GTTTCTGC-AGAATCTCTGATTTAAAGGGCTC-TT--C 115
Query 119 AT-AAGAAGAAGGGTCTAAAAGATGGCAGAATCAGAAGAGAATAGCGTTTTGTTTCCCAT 177
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 ATCAACAAGAAGGGTCTAAAAGATGGCAGAATCAGAAGAGAATAGCGTTTTGTTTCCCAT 175
Query 178 TTTCATTTTGACAATGATGGCAATTCCATTGGTTCCTTATACATTTGTGAAGCTAAGCCG 237
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 176 TTTTATTTTGACAATGATGGCAATTCCATTGGTGCCTTATACATTTGTGAAGCTAAGCCG 235
Query 238 CGCTTTTTCTAAGAAACAACGGAGTATACATTGTCAATGTCTTGAGTGTGATCGTTCAGG 297
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 236 CGCTTTTTCGAAGAAACAACGGAGCATACATTGTCAATGTCTTGAATGTGATCGTTCAGG 295
Query 298 GAAGTACAAGAGATCCATTTCTCAAAGTATCTCTAGCTTCACTTCTTGTAGCAACTTGAC 357
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 296 GAAGTACAAGAGATCCATTTCTCAAAGAATCTCTAGCTTCACTTCATGTAGCAACTTGAC 355
Query 358 AGTTGTCCTACTTTGGATTGTAATGATCTTCTTGATTTATCATACTAAGAACATGAGCCG 417
|||||| ||||||||||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 356 AGTTGTGCTACTTTGGATTGTAATGATCTTCTTGATCTATTACACTAAGAACATTAGCCG 415
Query 418 TGAGAGTCAACTCTTTGAGCCATTCGGTATACTCGGTTTGGAACCTGGTGCTTCAGATTC 477
|||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||
Sbjct 416 TGAGAGTCAACTCTTTGAGCCATTCGGTATACTCGGGTTGGAACCGGGTGCTACAGATTC 475
Query 478 AGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 476 AGAAATCAAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCGGA 535
Query 538 TCCAGAGGCCAATAAATATTTTGTGGAGTCCATAGCTAAAGCTTACCAAGCTTTGACTGA 597
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TCCAGAAGCCAATAAATATTTTGTGGAGTCCATAGCTAAAGCTTACCAAGCTTTGACTGA 595
Query 598 TCCGTTATCCCGCGAAAACTTTGAGAAGTACGGTCATCCGGATGGTAGACAGGGTTATAC 657
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 596 TCCGTTATCCCGTGAAAACTTTGAGAAGTACGGTCATCCGGATGGTAGGCAGGGTTATAC 655
Query 658 AATGGGAATTGCTCTTCCTCAATTTATTTTAAACATGAATGGAGAATCTGGTGGGATATT 717
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||
Sbjct 656 AATGGGAATTGCTCTTCCTCAATTTATCTTAAACATGAATGGAGACTCTGGTGGGGTGTT 715
Query 718 ATTGTTGTGTACAGTTGGTTTATGTATTCTTTTGCCACTAGTGATCGCTTCAATCTATCT 777
||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 716 GTTGTTGTGTACAGTTGGTTTATGTATTCTCTTGCCACTCGTGATCGCTTCGATCTATCT 775
Query 778 CTGGAGATCATCAAAGTATACTGGGAATCACGTTAAGCTTCAAACTCGTCAAGCATATTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTGGAGATCATCAAAGTATACTGGGAATCACGTTAAGCTTCAAACTCGTCAAGCATATTT 835
Query 838 CGAGTTATTGCAACCCTCTTTAACTCCAAGCAAAGTTATGGATATTTTCATCAGAGCAGC 897
|||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 836 CGAGTTATTGCAACCCACTTTAACTCCAAGCAAAGTTATGGAAATTTTCATCAAAGCAGC 895
Query 898 TGAATACGCAGAGATTTCAGTTCGTAAATCCGATGATGAATCTCTGCAGAAACTCTTTA- 956
|||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 896 TGAATATGCAGAGATTCCAGTTCGTAAAACCGATGATGAATCTCTGCAGAAACTCTATAC 955
Query 957 TGTCTGTCAA-AAGCGAGCTAAATTTGGATCCTAAGAAGTTGAAGCAAGAGGAAGCTAAG 1015
| |||||||| || |||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 956 T-TCTGTCAAGAA-CGAGCTAAATCTGGACCCTAAGAAGTTGAAGCAAGAGGAAGCTAAG 1013
Query 1016 TTTTGGAAAAAGCATCCTGCAACTATCAAGACTGAGCTTTTGATACAGAAACAGTTAACT 1075
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTTTGGAAAAAGAATCCTGCAATTATCAAGACTGAGCTTTTGATACAGAAACAGTTAACT 1073
Query 1076 CGTGAATCATCAGTCCTGTCTCCGACTCTGCAACGTGATTTCAGGCATGTGCTAGAGTTT 1135
|||||||||||||| | ||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 1074 CGTGAATCATCAGTTCAGTCTCTGACTCTGCAACGTGATCTCAGGCGTGTGCTAGAGTTT 1133
Query 1136 GCACCTCGCCTGCTTGAAGATTTGATTAAGATGGCCGTTATACCCCGCAATGAACAAGGG 1195
|| |||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1134 GCGCCTCGCCTCCTTGAAGATTTGATGAAGATGGCGGTTATACCCCGAAATGAACAAGGG 1193
Query 1196 CGTGGATGGTTACGTCCTGCACTTGGAGTAATGGAGCTATCTCAATGCATTGTTCAGGCT 1255
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1194 CGTGGATGGTTACGTCCTGCACTTGGAGTAATAGAGCTATCTCAGTGCATTGTTCAGGCT 1253
Query 1256 GTTCCTCTTAGTGCAAGGAAGTCATCTTCAGAAGACATTGCTCCTTTCTTGCAACTCCCT 1315
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GTTCCTCTTAGTGCGAGGAAGTCATCTTCAGAAGACATTGCTCCTTTCTTGCAACTCCCT 1313
Query 1316 CATTTCAATGAATCTATCGCTAAATCGATAGCGTTGCAGGTTAAATCATTCCAAAAGTTT 1375
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CATTTCAATGAGTCTATCGCTAAATCGATAGCGTTGCAGGTTAAATCATTCCAAAAGTTT 1373
Query 1376 CAAGAACTGAGCTTGGCAGAACGTTCTAAACTGCTCAGAGAGGTTGTGAGTTTGTCAGAA 1435
|||||||||||||||| ||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 1374 CAAGAACTGAGCTTGGAAGAACGTTCTAAACTGCTCAGAGAGGTTGCGAGTCTATCAGAA 1433
Query 1436 ACCGATGTTCAAGACATCGAGAAAGTGTTAGAAATGATACCTTCTCTTAAAATCAACGTC 1495
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1434 ACCGATGTTCAAGACATCGAGAAAGTGTTAGAAATGATACCTTCTCTTAAAATCGACGTC 1493
Query 1496 ACTTGCAAAACAGAAGGCGAAGAAGGCATTCAAGAAGGCGATATTATGACAGTTCAAGCT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1494 ACTTGCAAAACAGAAGGCGAAGAAGGCATTCAAGAAGGCGATATTATGACAGTTCAATCT 1553
Query 1556 TGGATCACTCTGAAACGTCCCAATGGACTCATAGGCGCTATTCCTCACTCACCTTACTTT 1615
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1554 TGGATCACTCTAAAACGTCCCAATGGACTCATAGGCGCTATTCCTCACTCACCATACTTT 1613
Query 1616 CCTTTCCACAAAGAGGAAAACTTTTGGGTTCTTCTTGCGGATTCAAACCATGTCTGGTTC 1675
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1614 CCTTTCCACAAAGAGGAAAACTTTTGGGTTCTTCTTGCGGATTCAAACAATGTCTGGTTC 1673
Query 1676 TTTCAGAAGGTTAAATTCATGGATGAAGCTGGAGCTATAGCCGCTGCATCAAACACTATT 1735
||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1674 TTTCAGAAGGTTAGTTTCATGGATGAAGCAGGAGCTATAGCCGCTGCATCGAATGCTATT 1733
Query 1736 ACTGAAACAATGGAACCTTTAGGAGCAAGCGTCAAGGAAACAAATGATGCAGTTAAAGAA 1795
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 ACTGAGACAATGGAACCTTTAGGAGCAAGCGTCAAGGAAACAAATGATGCAGTTAAAGAG 1793
Query 1796 GCTGTTGAGAAGGTTAAAAGTGGGTCAAGATTGGTAATGGGGAGACTCTTAGCACCTGGA 1855
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1794 GCTGTTGAGAAGGTTAAAAGTGGGTCGAGATTGGTAATGGGGAGACTCTTAGCACCTGGA 1853
Query 1856 GAAGGTACTTATAACTTGACTTGCTTCTGCCTAAGCGATACTTGGATCGGTTGTGACCAA 1915
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1854 GAAGGTACATATAACTTGACTTGCTTCTGCCTCAGCGATACTTGGATCGGTTGTGACCAA 1913
Query 1916 AAGACATCACTGAAAGTCGAGGTTTTGAAAAGAACCCGTGATGTGGAGGGTGAGAATGCA 1975
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1914 AAGACATCACTGAAAGTTAAGGTTTTGAAAAGAACCCGTGATTTGGAGGGTGAGAATGCA 1973
Query 1976 GAAGAAGGATTAGAGGAAGAGGATGATGAGATTGAAGAGGAGGATTACGAAAGCGAATAC 2035
|||||| |||| ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1974 GAAGAAAGATTGGAGGACGACGAAGATGAGATTGAAGAGGAGGATTACGAAAGCGAATAC 2033
Query 2036 AGTGAGGACGAGGAAGATAAGAAGAGAGGGTCAAAGAAGAAAGTAAACAAG--G-AATCG 2092
|| || |||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 2034 AGCGAAGACGAGGAAGATAAGAAGAGAGGGTCGAAGAAGAAAGTAAACAAGAAGGAATCG 2093
Query 2093 AGTTCTGAAGAGTCAGGATCAGATGAAGAGTAAAAGAACAAAAAGTAGTTAACGTTGATC 2152
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |
Sbjct 2094 AGTTCTGAAGAGTCGGGATCAGATGAAGAGTAAAAGAACAAAAAGTAGTCAAC-TT--T- 2149
Query 2153 TGAAATTATTGTCTGAAATTATACAATAATTTTTGTTTTCAGAGCTTACACAGTCGTACT 2212
|| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2150 -GA--T------CTGAAATTATACAATAATTTTTGTTTTCAAAGCTTACACAGTCGTACT 2200
Query 2213 AAAAGATTTTACAGTATTTAATCTTTTTGCTGAGTTTAATACTCTTTTTAGTTGACTCTT 2272
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2201 CAAAGATTTTACAGTATTTAATCTTTT-GCTGAGTTTAATACTCTTTTTAGTTGACTCTT 2259
Query 2273 CAAATCTATACCTTGTTTTGACTCTTAAGCTCAGATAGTTCAAAACTTTTCTGGTCATGT 2332
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2260 TAAATCTATATCTTGTTTTGACTCTTAAGCTCAAATAGTTCAAAACTTTTCTGGTCATGT 2319
Query 2333 TTT 2335
|||
Sbjct 2320 TTT 2322
> Ahg477265 jgi|Araly1|477265|fgenesh2_kg.2__2395__AT1G79940.1
Length=2209
Score = 1443 bits (781), Expect = 0.0
Identities = 1526/1876 (81%), Gaps = 90/1876 (5%)
Strand=Plus/Plus
Query 132 TCTAAAAGATGGCAGAATCAGAAGAGAATAGCGTTTTGTTTCCCATTTTCATTTTGACAA 191
||||||||||||| | |||||||||||||||| |||||||||||||| || ||||| |
Sbjct 98 TCTAAAAGATGGCGGCTTCAGAAGAGAATAGCGCATTGTTTCCCATTTTTATCTTGACGA 157
Query 192 TGATGGCAATTCCATTGGTTCCTTATA-CATTTGTGAAGCTAAGCC-GCGCTTTTTCTAA 249
| ||||||||||| ||||| ||||||| || | || ||| ||| || | ||| | || ||
Sbjct 158 TTATGGCAATTCCTTTGGTGCCTTATACCA-TGGTCAAGTTAA-CCGGTGCTCTCTCCAA 215
Query 250 GAAACAACGGAGTATACATTGTCAATGTCTTGAGTGTGATCGTTCAGGGAAGTACAAGAG 309
||||||| ||| || || ||||| ||||| |||||||| ||||| || || || |||||
Sbjct 216 GAAACAAAGGACCATTCACTGTCAGTGTCTCGAGTGTGACCGTTCTGGCAAATATAAGAG 275
Query 310 ATCCATT-TCT-CAAAGTATCTCTAGCTTCACTTCTTGTAGCAACTTGACAG-TTGTCCT 366
|||| || | | |||| ||||||| |||| || | || ||||||||||| | |||| ||
Sbjct 276 ATCC-TTGTTTAAAAAG-ATCTCTAACTTCTCTACATGGAGCAACTTGAC-GCTTGTGCT 332
Query 367 ACTTTGGATTGTAATGATCTTCTTGATTTATCATACTAAGAACATGAGCCGTGAGAG-TC 425
||| ||| | || ||| | |||||||||||| | ||||||||||||||||||||| | ||
Sbjct 333 ACTCTGGGTCGTGATGGTTTTCTTGATTTATTACACTAAGAACATGAGCCGTGAG-GCTC 391
Query 426 AACTCTTTGAGCCATTCGGTATACTCGGTTTGGAACCTGGTGCTT-CAGATTCAGAAATC 484
|| | ||||| |||||| ||||||| || |||||||||| | || |||||||||||||
Sbjct 392 AAGTTTTTGACCCATTCAGTATACTTGGACTGGAACCTGGAG-TTACAGATTCAGAAATT 450
Query 485 AAGAAAGCATATAGAAGACTCTCTATTCAATACCATCCTGATAAAAATCCTGATCCAGAG 544
||||||||||||||||| || || |||||||||||||||||||||||||| |||||||||
Sbjct 451 AAGAAAGCATATAGAAGGCTGTCCATTCAATACCATCCTGATAAAAATCCAGATCCAGAG 510
Query 545 GCCAATAAATATTTTGTGGAGTCCATAGCTAAAGCTTACCAAGCTTTGACTGATCCGT-T 603
|||||| ||||||| ||||||| ||| ||||||| ||||| |||||||||||||| | |
Sbjct 511 GCCAATCAATATTTCGTGGAGTTCATTTCTAAAGCCTACCAGGCTTTGACTGATCC-TGT 569
Query 604 ATCCCGCGAAAACTTTGAGAAGTACGGTCATCCGGATGGTAGACAGGG-TTATACAATGG 662
|||||| ||||||||||||||||| |||||||| ||||| |||||||| || | |||||
Sbjct 570 ATCCCGTGAAAACTTTGAGAAGTATGGTCATCCAGATGGCAGACAGGGATTCCA-AATGG 628
Query 663 GAATTGCTCTTCCTCAATTTATTTTAAACA-TGAATGGAGAATCTGGTGGGATATTATTG 721
| |||||||||||||||||| ||||| ||| || |||||| ||||||||| |||||||||
Sbjct 629 GCATTGCTCTTCCTCAATTTCTTTTAGACATTG-ATGGAGCATCTGGTGGCATATTATTG 687
Query 722 -TTGTGTACAGTTGGTTTATGTATTCTTTTGCCACTAGTGATCGCT-TCAATCTATCTCT 779
|| || | ||||||| | |||||||| ||||| || ||||| ||| | || |||||||
Sbjct 688 CTT-TGGATAGTTGGTGTCTGTATTCTCTTGCCCCTTGTGATTGCTGT-TATATATCTCT 745
Query 780 GGAGATCATCAAAGTATACTGGGAATC-ACGTTAAGCTTC-AA-ACTCGTCAAGCATATT 836
||| |||||||||||||| || || | |||||| || || || |||| || |||||||
Sbjct 746 CGAGGTCATCAAAGTATACCGGCAA-CTACGTTATGCATCAAACACTC-TC-CGCATATT 802
Query 837 -TCGAGT-TATTGCAACCCTCTTTAACTCCAAGCAAAGTTATGGATA-TTTTCATC-AGA 892
| | | || || |||||||||| | ||||||||||||||||| | |||||| | ||
Sbjct 803 AT-TA-TCTAATGAAACCCTCTTTGGCCCCAAGCAAAGTTATGGA-AGTTTTCACCAAG- 858
Query 893 GCAGCTGAATACGCAGAGATTTCAGTTCGTA-AATCCGATGATGAATCTCTGCAGAAACT 951
|||||||| ||| |||||| ||||||||| || | ||||||||| |||||||||| ||
Sbjct 859 GCAGCTGAGTACATGGAGATTCCAGTTCGTAGAA-CTGATGATGAACCTCTGCAGAAGCT 917
Query 952 CTTTATGTCTGTCAAAAGCGAGCTAAATTTGGATCCT-AAGAAGTTGAAGCAAGAGGAAG 1010
|||||||||||| | || |||||||| ||||| ||| ||||| ||||||||||| |||
Sbjct 918 CTTTATGTCTGTTAGGAGTGAGCTAAACTTGGA-CCTGAAGAACATGAAGCAAGAGCAAG 976
Query 1011 CTAAGTTTTGGAAAAAGCATCCTGCAACTA-TCAAGACTGAGCTTTTGATACAGAAACAG 1069
|||||||||||||| |||||||||| | || | ||||| ||||| ||||||||| |||
Sbjct 977 CTAAGTTTTGGAAACAGCATCCTGCCA-TAGTGAAGACGGAGCTGTTGATACAGGCCCAG 1035
Query 1070 TTAACTCGTGAATCATCAGTCCTGTCT-CCGACTCTGCAACGTGATTTCAGGCATGTGCT 1128
||||||||||||||| |||||||||| ||| | || || |||||||||||| ||||||
Sbjct 1036 TTAACTCGTGAATCAGGAGTCCTGTCTCCCG-CCCTTCAGGGTGATTTCAGGCGTGTGCT 1094
Query 1129 AGAGTTTGCACCTCGCCTGCTTGAAGATTTGATT-AAGATGGCCGTTATACCCCGCAATG 1187
|||| ||||||||||||| ||||| || || ||| |||||||| |||||||| |||| ||
Sbjct 1095 AGAGCTTGCACCTCGCCTCCTTGAGGAGTT-ATTGAAGATGGCGGTTATACCGCGCACTG 1153
Query 1188 AACAAGGGCGTGGATGG-TTACGTCCTGCACTTGGAGTAATGGAGCTATCTCAATGCATT 1246
||||||| ||||||| | | | |||||| |||||||| | ||||||||||| ||||||
Sbjct 1154 CCCAAGGGCATGGATGGCTGA-GACCTGCAGTTGGAGTAGTTGAGCTATCTCAGTGCATT 1212
Query 1247 GTTCAGGCTGTTCCTCTTAGTGCAAGGAAGTC------A-T--CTTCAGAAGACATTGCT 1297
|||||||||||||||||||||||||||||||| | | ||||||||| |||| |
Sbjct 1213 GTTCAGGCTGTTCCTCTTAGTGCAAGGAAGTCTTCTGGAGTATCTTCAGAAGGCATTTCC 1272
Query 1298 CCTTTCTTGCAACTCCCTCATTTCAATGAAT-CTATCG-CTAAATCGATAGC--GTT-GC 1352
|||||||| || ||||||||||||| ||| | | | | | ||| |||||| | |
Sbjct 1273 CCTTTCTTACAGCTCCCTCATTTCAGTGA-TGCCGTTGTCAAAAA-GATAGCACGGAAGA 1330
Query 1353 AGGTTAAATCATTCCAAAAGT-TTCAAGAACTGAGCTTGGCAGAACGTTCTAAACTGCTC 1411
||||||||||||||||| | | |||||||| |||| |||| ||| |||||| ||||||||
Sbjct 1331 AGGTTAAATCATTCCAAGA-TCTTCAAGAAATGAGGTTGGAAGACCGTTCTGAACTGCTC 1389
Query 1412 AGAGAGGTTGTGAGTTTGTCAGAAACCGATGTTCAAGACATCGAGAAAGTGTTAGAAATG 1471
| |||| | | |||| |||| ||| |||||| | ||||| ||||| ||| ||||||||
Sbjct 1390 ACCCAGGTAGCGGGTTTATCAGCAACTGATGTTGAGGACATTGAGAAGGTGCTAGAAATG 1449
Query 1472 ATACCTTCTCTTAAAATCAACGTCACTTGCAAAACAGAAGGCGAAGAAGGCATTCAAGAA 1531
|| || ||||||| | || || |||| || |||||||||| ||||| || || |||||
Sbjct 1450 ATGCCGTCTCTTACAGTCGACATCACATGTGAAACAGAAGGGGAAGAGGGGATCCAAGAG 1509
Query 1532 GGCGATATTATGACAGTTCAAGCTTGGATCACTCTGAAACGTCCCAATGGACTCATAGGC 1591
|| || || |||| ||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 1510 GGTGACATCGTGACCCTTCAAGCTTGGGTCACTCTGAAACGACCCAATGGGCTCATAGGC 1569
Query 1592 GCTATTCCTCACT-CACCTTACTTTCCTTTCCACAAAGAGGAAAACTTTTGGGTTCTTCT 1650
|| ||||||| | |||| ||||| ||||||||||| |||||||||| |||||||||||
Sbjct 1570 GCCCTTCCTCA-TGCACCCTACTTCCCTTTCCACAAGGAGGAAAACTACTGGGTTCTTCT 1628
Query 1651 TGCGGATTCA------AACCATGTCTGGTTCTTTCAGAAGGTTAAA-TTCATGGATGAAG 1703
||| ||||| ||| | || ||||||| ||||||||| || |||||||||||||
Sbjct 1629 TGCTGATTCGGTGTCGAACAACGTGTGGTTCTCTCAGAAGGT-AAGCTTCATGGATGAAG 1687
Query 1704 CTGGAGCTATAGCCGCTGCATC-AAA-CACTATTACTGAAACAATGGAACCTTTAGGAGC 1761
|||||| ||| | |||||||| ||| | | || | ||| |||||||| || ||||||
Sbjct 1688 GTGGAGCGATAACGGCTGCATCGAAAGC-C-ATCAGTGAGTCAATGGAAGGTTCAGGAGC 1745
Query 1762 AAGCGTCAAGGAAACAAATGATGCAGTTAAAGAAGCTG-TTGAGAAGGTTAAAAGTGGGT 1820
| | || ||||||||||| |||||||| | |||||| | |||||||||||||| | ||||
Sbjct 1746 AGGGGTGAAGGAAACAAACGATGCAGTGAGAGAAGC-GATTGAGAAGGTTAAAGGCGGGT 1804
Query 1821 CAAGATTGGTAATGGGGAGACTCTTAGCACCTGG-AGAAGGTACTTATAACTTGACTTGC 1879
|||| |||||||||| | |||| |||||| || ||| || || || ||||||||||||
Sbjct 1805 CAAGGCTGGTAATGGGTAAACTCCAAGCACC-GGCAGAGGGAACATACAACTTGACTTGC 1863
Query 1880 TTCTGCCTAAGCGATACTTGGATCGGTTGTGACCAAAAGACAT-CACTGAAAGTCGAG-G 1937
|| ||||| |||| || |||||||| ||||| ||||| || |||||||||| || |
Sbjct 1864 TTGTGCCTGTGCGACACATGGATCGGGTGTGATAAAAAG-CAAGCACTGAAAGT-GAAAG 1921
Query 1938 TTTTGAAAAGAACCCG 1953
| |||||||||||||
Sbjct 1922 TCCTGAAAAGAACCCG 1937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87950375705
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5