BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G21190.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329483 jgi|Araly1|329483|fgenesh1_pm.C_scaffold_7001710 1391 0.0
Ahg492766 jgi|Araly1|492766|fgenesh2_kg.7__2199__AT4G21180.1 285 6e-76
> Ahg329483 jgi|Araly1|329483|fgenesh1_pm.C_scaffold_7001710
Length=954
Score = 1391 bits (753), Expect = 0.0
Identities = 893/955 (94%), Gaps = 32/955 (3%)
Strand=Plus/Plus
Query 84 ATGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACT 143
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTTAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACT 60
Query 144 AAGCTCTTCACCAAAAAGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCT 203
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCTCTTCTCCAAAAGGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCT 120
Query 204 CGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTAAAGCTGCCAAA 263
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 121 CGGTCTCCTCGAGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCCAAGGCTGCCAAA 180
Query 264 ATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTATGGAGCGCTTGAT 323
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTACGGAGCGCTTGAT 240
Query 324 TCCTTCATTGCTTGGGAATTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATA 383
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCTTCATTGCTTGGGAGTTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATA 300
Query 384 CTTGAAGATGAAAAAGAATGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAA 443
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTGAAGATGAAAAAGAGTGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAA 360
Query 444 GGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAAT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAAT 420
Query 504 CGCCTTGACGAAGCTGAGGAATTGTGGAACAAATTGTTCATGGAACATTTAGAAGGAACT 563
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 CGGCTTGACGAAGCTGAGGAATTGTGGAACAAGTTGTTCATGGAACATTTAGAAGGAACT 480
Query 564 CCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAG 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAG 540
Query 624 CTCTTCGAGGTCTTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAATGTTGCGATTGTG 683
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CTCTTTGAGGTATTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAACGTTGCGATTGTG 600
Query 684 TCTATGGTTGGAAAAGTGTTTGTGAAACTAGAGATGAAGGATAAGTACGAGAAACTGATG 743
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 TCTATGGTTGGAAAAGTGTTTGTGAAATTAGAGATGAAGGATAAGTACGAGAAACTGATG 660
Query 744 AAGAAATATCCTCCACCACAGTGGGAGTTTAGATACATCAAAGGAAGACGTGTTAAGGTC 803
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 661 AAGAAATATCCTCCACCTCAGTGGGAGTTCAGATACATCAAAGGAAGACGCGTTAAGGTC 720
Query 804 AAGGCAAAGCAGCTGAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGACGAAGAT 863
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 AAGGCAAAGCAGCTAAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGATGAAGAT 780
Query 864 AAGATTGACAAtgagattgagagtgaag--aagaa-gatg---g-tgaggatct----ca 912
|||||||| | ||||||||||||| || || || | || | | |||| | ||
Sbjct 781 AAGATTGATACTGAGATTGAGAGTAAATCTAA-AATGTTGTCAGATAAGGAACCAGAGCA 839
Query 913 -g-tga--ag-a-----g-gaaga--a-ga---tgaaaaagaaCTTTTGGGTGGAAGTCA 955
| || || | | ||||| | || ||||||||||||||||||||||| |||
Sbjct 840 AGATGGTGAGGATCTCAGTGAAGAGGAAGAAGATGAAAAAGAACTTTTGGGTGGAAATCA 899
Query 956 AGGACAGATT--A-CTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA 1007
|||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGGACAGATTGGAACTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA 954
> Ahg492766 jgi|Araly1|492766|fgenesh2_kg.7__2199__AT4G21180.1
Length=2322
Score = 285 bits (154), Expect = 6e-76
Identities = 169/176 (96%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 1111 AAAACATGACCAGAAAAGTTTTGAACTATCTGAGCTTAAGAGTCAAAACAAGGTATAGAT 1170
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 2322 AAAACATGACCAGAAAAGTTTTGAACTATTTGAGCTTAAGAGTCAAAACAAGATATAGAT 2263
Query 1171 TTGAAGAGTCAACTAAAAAGAGTATTAAACTCAGCAAAAAGATTAAATACTGTAAAATCT 1230
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2262 TTAAAGAGTCAACTAAAAAGAGTATTAAACTCAGCAAAA-GATTAAATACTGTAAAATCT 2204
Query 1231 TTTAGTACGACTGTGTAAGCTCTGAAAACAAAAATTATTGTATAATTTCAGA-CAA 1285
|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 2203 TTGAGTACGACTGTGTAAGCTTTGAAAACAAAAATTATTGTATAATTTCAGATCAA 2148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5